Macromolecule Content

Total Structure Weight: 76.15 kDa
Atom Count: 5798
Residue Count: 685
Unique protein chains: 2

1A6V

B1-8 FV fragment complexed with a (4-hydroxy-3-nitrophenyl) acetate compound

DOI: 10.2210/pdb1A6V/pdb

Classification: IMMUNE SYSTEM
Organism(s): Mus musculus
Expression System: Mus musculus
Mutation(s): Yes

Deposited: 1998-03-03 Released: 1998-07-15
Deposition Author(s): Simon, T., Henrick, K., Hirshberg, M., Winter, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Work: 0.296

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

X-Ray Structures of Fv Fragment and its (4-Hydroxy-3-Nitrophenyl)Acetate Complex of Murine B1-8 Antibody

Simon, T., Henrick, K., Hirshberg, M., Winter, G.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
B1-8 FV (LIGHT CHAIN)	L, M, N	110	Mus musculus	Mutation(s): 1
Find proteins for P01724 (Mus musculus) Explore P01724 Go to UniProtKB: P01724
Protein Feature View Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
B1-8 FV (HEAVY CHAIN)	H, I, J	120	Mus musculus	Mutation(s): 1
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NPC Query on NPC Download Ideal Coordinates CCD File SDF format, chain G [H] SDF format, chain H [H] SDF format, chain I [H] MOL2 format, chain G [H] MOL2 format, chain H [H] MOL2 format, chain I [H]	H	4-HYDROXY-3-NITROPHENYLACETYL-EPSILON-AMINOCAPROIC ACID ANION C₁₄ H₁₇ N₂ O₆ XAYGJFACOIKJCT-UHFFFAOYSA-M		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Work: 0.296
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.76	α = 90
b = 86.19	β = 90
c = 111.511	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
AGROVATA/ROTAVATA	data reduction
MLPHARE	phasing
PROLSQ	refinement
AGROVATA	data scaling
ROTAVATA	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 1998-03-03
Released Date: 1998-07-15

Deposition Author(s):

Revision History

Version 1.0: 1998-07-15
Type: Initial release
Version 1.1: 2008-03-24
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2013-08-14
Changes: Other, Structure summary

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.