1V7P
Structure of EMS16-alpha2-I domain complex
- PDB DOI: https://doi.org/10.2210/pdb1V7P/pdb
- Classification: TOXIN/CELL ADHESION
- Organism(s): Echis multisquamatus, Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes 
- Deposited: 2003-12-19 Released: 2004-09-07 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.235 
- R-Value Work: 0.188 
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
EMS16 A chain | 134 | Echis multisquamatus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q7T2Q1 (Echis multisquamatus) Explore Q7T2Q1  Go to UniProtKB:  Q7T2Q1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q7T2Q1 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
EMS16 B chain | 128 | Echis multisquamatus | Mutation(s): 1  | ||
UniProt | |||||
Find proteins for Q7T2Q0 (Echis multisquamatus) Explore Q7T2Q0  Go to UniProtKB:  Q7T2Q0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q7T2Q0 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Integrin alpha-2 | 200 | Homo sapiens | Mutation(s): 3  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P17301 (Homo sapiens) Explore P17301  Go to UniProtKB:  P17301 | |||||
PHAROS:  P17301 GTEx:  ENSG00000164171  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P17301 | ||||
Sequence AnnotationsExpand | |||||
|
Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
PO4 Query on PO4 | D [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
MN Query on MN | G [auth C] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.235 
- R-Value Work: 0.188 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 163.766 | α = 90 |
b = 38.449 | β = 91.52 |
c = 69.524 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
MOLREP | phasing |
Entry History 
Deposition Data
- Released Date: 2004-09-07  Deposition Author(s): Horii, K., Okuda, D., Morita, T., Mizuno, H.
Revision History (Full details and data files)
- Version 1.0: 2004-09-07
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2021-11-10
Changes: Database references, Structure summary - Version 1.5: 2023-12-27
Changes: Data collection