1U83

PSL synthase from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

PSL synthase from Bacillus subtilis

Cuff, M.E.Xu, X.Savchenko, A.Edwards, A.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphosulfolactate synthase
A
276Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: yitD
EC: 4.4.1.19
Find proteins for O06739 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O06739
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.188 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 92.071α = 90.00
b = 92.071β = 90.00
c = 92.071γ = 90.00
Software Package:
Software NamePurpose
DMmodel building
HKL-2000data scaling
CNSrefinement
SHELXDphasing
SBC-Collectdata collection
MLPHAREphasing
HKL-2000data reduction
DMphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-09-14
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2012-09-26
    Type: Structure summary
  • Version 1.4: 2017-10-11
    Type: Refinement description