Biological Assembly 1  

 3D View: Structure

Global Symmetry: Icosahedral - I  (3D View)
Global Stoichiometry: Hetero 240-mer - A60B60C60D60 Pseudo Symmetry: Icosahedral - I  (3D View)
Pseudo Stoichiometry: Hetero 240-mer - A120B60C60 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content

• Total Structure Weight: 94.45 kDa 
• Atom Count: 6266 
• Modelled Residue Count: 804 
• Deposited Residue Count: 855 
• Unique protein chains: 4

1RUJ

RHINOVIRUS 14 MUTANT WITH SER 1 223 REPLACED BY GLY (S1223G)

• DOI: 10.2210/pdb1RUJ/pdb

• Classification: VIRUS
• Organism(s): Rhinovirus B14
• Expression System: Homo sapiens
• Mutation(s): Yes 


• Deposited: 1995-06-09 Released: 1995-11-14 
• Deposition Author(s): Hadfield, A., Oliveira, M.A., Kim, K.H., Minor, I., Kremer, M.J., Heinz, B.A., Shepard, D., Pevear, D.C., Rueckert, R.R., Rossmann, M.G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å

Literature

Structural studies on human rhinovirus 14 drug-resistant compensation mutants.

Hadfield, A.T., Oliveira, M.A., Kim, K.H., Minor, I., Kremer, M.J., Heinz, B.A., Shepard, D., Pevear, D.C., Rueckert, R.R., Rossmann, M.G.

(1995) J Mol Biol 253: 61-73

• PubMed: 7473717 
• DOI: 10.1006/jmbi.1995.0536
• Primary Citation of Related Structures:  
  1RUJ, 1RUI, 1RUH, 1RUG, 1RUF, 1RUE, 1RUD, 1RUC


• PubMed Abstract: 
  

Structures have been determined of three human rhinovirus 14 (HRV14) compensation mutants that have resistance to the antiviral capsid binding compounds WIN 52035 and WIN 52084. In addition, the structure of HRV14 is reported, with a site-directed mutation at residue 1219 in VP1. A spontaneous mutation occurs at the same site in one of the compensation mutants. Some of the mutations are on the viral surface in the canyon and some lie within the hydrophobic binding pocket in VP1 below the ICAM footprint. Those mutant virus strains with mutations on the surface bind better to cells than does wild-type virus. The antiviral compounds bind to the mutant viruses in a manner similar to their binding to wild-type virus. The receptor and WIN compound binding sites overlap, causing competition between receptor attachment and antiviral compound binding. The compensation mutants probably function by shifting the equilibrium in favor of receptor binding. The mutations in the canyon increase the affinity of the virus for the receptor, while the mutations in the pocket probably decrease the affinity of the WIN compounds for the virus by reducing favorable hydrophobic contacts and constricting the pore through which the antiviral compounds are thought to enter the pocket. This is in contrast to the resistant exclusion mutants that block compounds from binding by increasing the bulk of residues within the hydrophobic pocket in VP1.

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Related Citations: 

• Analysis of the Structure of a Common Cold Virus, Human Rhinovirus 14, Refined at a Resolution of 3.0 Angstroms
  Arnold, E., Rossmann, M.G.
  (1990) J Mol Biol 211: 763

• Three Dimensional Structures of Drug-Resistant Mutants of Human Rhinovirus 14
  Badger, J., Krishnaswamy, S., Kremer, M.J., Oliveira, M.A., Rossmann, M.G., Heinz, B.A., Rueckert, R.R., Dutko, F.J., Mckinlay, M.A.
  (1989) J Mol Biol 207: 163

• Structural Analysis of Antiviral Agents that Interact with the Capsid of Human Rhinoviruses
  Badger, J., Minor, I., Oliveira, M.A., Smith, T.J., Rossmann, M.G.
  (1989) Proteins 6: 1

• Genetics and Molecular Basis for Resistance of Human Rhinovirus 14 to an Antiviral Drug
  Heinz, B.A., Rueckert, R.R., Shepard, D.A., Dutko, F.J., Mckinlay, M.A., Fancher, M., Rossmann, M.G., Badger, J., Smith, T.J.
  (1989) J Virol 63: 2476

• The Use of Molecular Replacement Phases for the Refinement of the Human Rhinovirus 14 Structure
  Arnold, E., Rossmann, M.G.
  (1988) Acta Crystallogr A 44: 270

• Structural Analysis of a Series of Antiviral Agents Complexed with Human Rhinovirus 14
  Badger, J., Minor, I., Kremer, M.J., Oliveira, M.A., Smith, T.J., Griffith, J.P., Guerin, D.M.A., Krishnaswamy, S., Luo, M., Rossmann, M.G., Mckinlay, M.A., Diana, G.D., Dutko, F.J., Fancher, M., Rueckert, R.R., Heinz, B.A.
  (1988) Proc Natl Acad Sci U S A 85: 3304

• The Structure Determination of a Common Cold Virus, Human Rhinovirus 14
  Arnold, E., Vriend, G., Luo, M., Griffith, J.P., Kamer, G., Erickson, J.W., Johnson, J.E., Rossmann, M.G.
  (1987) Acta Crystallogr A 43: 346

• The Site of Attachment in Human Rhinovirus 14 for Antiviral Agents that Inhibit Uncoating
  Smith, T.J., Kremer, M.J., Luo, M., Vriend, G., Arnold, E., Kamer, G., Rossmann, M.G., Mckinlay, M.A., Diana, G.D., Otto, M.J.
  (1986) Science 233: 1286

• Structure of a Human Common Cold Virus and Functional Relationship to Other Picornaviruses
  Rossmann, M.G., Arnold, E., Erickson, J.W., Frankenberger, E.A., Griffith, J.P., Hecht, H.-J., Johnson, J.E., Kamer, G., Luo, M., Mosser, A.G., Rueckert, R.R., Sherry, B., Vriend, G.
  (1985) Nature 317: 145

• Virion Orientation in Cubic Crystals of the Human Common Cold Virus Hrv14
  Arnold, E., Erickson, J.W., Fout, G.S., Frankenberger, E.A., Hecht, H.-J., Luo, M., Rossmann, M.G., Rueckert, R.R.
  (1984) J Mol Biol 177: 417

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Organizational Affiliation: 

Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-1392, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RHINOVIRUS 14	1	289	Rhinovirus B14	Mutation(s): 1  EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03303 (Human rhinovirus 14) Explore P03303  Go to UniProtKB:  P03303

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
RHINOVIRUS 14	2	262	Rhinovirus B14	Mutation(s): 0  EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03303 (Human rhinovirus 14) Explore P03303  Go to UniProtKB:  P03303

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
RHINOVIRUS 14	3	236	Rhinovirus B14	Mutation(s): 0  EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03303 (Human rhinovirus 14) Explore P03303  Go to UniProtKB:  P03303

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
RHINOVIRUS 14	4	68	Rhinovirus B14	Mutation(s): 0  EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03303 (Human rhinovirus 14) Explore P03303  Go to UniProtKB:  P03303

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 445.1	α = 90
b = 445.1	β = 90
c = 445.1	γ = 90

Software Package:

Software Name	Purpose
O	model building
PURDUE	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1995-06-09 
• Released Date: 1995-11-14 
Deposition Author(s): Hadfield, A., Oliveira, M.A., Kim, K.H., Minor, I., Kremer, M.J., Heinz, B.A., Shepard, D., Pevear, D.C., Rueckert, R.R., Rossmann, M.G.

Revision History  

• Version 1.0: 1995-11-14
  Type: Initial release
  
• Version 1.1: 2008-03-04
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance