1KVD

KILLER TOXIN FROM HALOTOLERANT YEAST


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Work: 0.186 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The novel acidophilic structure of the killer toxin from halotolerant yeast demonstrates remarkable folding similarity with a fungal killer toxin.

Kashiwagi, T.Kunishima, N.Suzuki, C.Tsuchiya, F.Nikkuni, S.Arata, Y.Morikawa, K.

(1997) Structure 5: 81-94

  • DOI: https://doi.org/10.1016/s0969-2126(97)00168-8
  • Primary Citation of Related Structures:  
    1KVD, 1KVE

  • PubMed Abstract: 

    Several strains of yeasts and fungi produce proteinous substances, termed killer toxins, which kill sensitive strains. The SMK toxin, secreted by the halotolerant yeast Pichia farinosa KK1 strain, uniquely exhibits its maximum killer activity under conditions of acidic pH and high salt concentration. The toxin is composed of two distinct subunits, alpha and beta, which tightly interact with each other under acidic conditions. However, they are easily dissociated under neutral conditions and lose the killer activity. The three-dimensional structure of the SMK toxin will provide a better understanding of the mechanism of toxicity of this protein and the cause of its unique pH-dependent stability.


  • Organizational Affiliation

    Protein Engineering Research Institute [Biomolecular Engineering Research Institute (BERI) as of the 1st of April 1996], 6-2-3, Furuedai, Suita, Osaka 565, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SMK TOXIN
A, C
63Millerozyma farinosaMutation(s): 0 
UniProt
Find proteins for P19972 (Millerozyma farinosa)
Explore P19972 
Go to UniProtKB:  P19972
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19972
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
SMK TOXIN
B, D
77Millerozyma farinosaMutation(s): 0 
UniProt
Find proteins for P19972 (Millerozyma farinosa)
Explore P19972 
Go to UniProtKB:  P19972
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19972
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Work: 0.186 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.1α = 90
b = 81.1β = 90
c = 118.46γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
X-PLORmodel building
PROLSQrefinement
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-04-01
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance