1DNV

PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Work: 0.271 
  • R-Value Observed: 0.271 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

The structure of an insect parvovirus (Galleria mellonella densovirus) at 3.7 A resolution.

Simpson, A.A.Chipman, P.R.Baker, T.S.Tijssen, P.Rossmann, M.G.

(1998) Structure 6: 1355-1367

  • DOI: https://doi.org/10.1016/s0969-2126(98)00136-1
  • Primary Citation of Related Structures:  
    1DNV

  • PubMed Abstract: 

    Parvoviruses infect vertebrates, insects and crustaceans. Many arthropod parvoviruses (densoviruses) are highly pathogenic and kill approximately 90% of the host larvae within days, making them potentially effective as selective pesticides. Improved understanding of densoviral structure and function is therefore desirable. There are four different initiation sites for translation of the densovirus capsid protein mRNA, giving rise to the viral proteins VP1 to VP4. Sixty copies of the common, C-terminal domain make up the ordered part of the icosahedral capsid.


  • Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-1392, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
GALLERIA MELLONELLA DENSOVIRUS CAPSID PROTEIN437Galleria mellonella densovirusMutation(s): 0 
UniProt
Find proteins for Q90125 (Galleria mellonella densovirus)
Explore Q90125 
Go to UniProtKB:  Q90125
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ90125
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Work: 0.271 
  • R-Value Observed: 0.271 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 264.44α = 90
b = 264.44β = 90
c = 683.45γ = 90
Software Package:
Software NamePurpose
GLRFphasing
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction
SCALEPACKdata scaling
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-02-16
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2023-04-19
    Type: Remediation
    Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Other, Refinement description