1AX0
ERYTHRINA CORALLODENDRON LECTIN IN COMPLEX WITH N-ACTYLGALACTOSAMINE
- PDB DOI: https://doi.org/10.2210/pdb1AX0/pdb
- Classification: LECTIN
- Organism(s): Erythrina corallodendron
- Mutation(s): No 
- Deposited: 1997-10-24 Released: 1998-05-06 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.200 
- R-Value Work: 0.180 
- R-Value Observed: 0.180 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
LECTIN | 239 | Erythrina corallodendron | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P16404 (Erythrina corallodendron) Explore P16404  Go to UniProtKB:  P16404 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16404 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | B | 7 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G26295XE GlyCosmos:  G26295XE GlyGen:  G26295XE |
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A2G Query on A2G | C [auth A] | 2-acetamido-2-deoxy-alpha-D-galactopyranose C8 H15 N O6 OVRNDRQMDRJTHS-CBQIKETKSA-N | |||
MN Query on MN | D [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.200 
- R-Value Work: 0.180 
- R-Value Observed: 0.180 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 84.22 | α = 90 |
b = 72.98 | β = 113.33 |
c = 71.26 | γ = 90 |
Software Name | Purpose |
---|---|
X-PLOR | model building |
CNS | refinement |
X-PLOR | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
X-PLOR | phasing |
Entry History 
Deposition Data
- Released Date: 1998-05-06  Deposition Author(s): Shaanan, B., Elgavish, S.
Revision History (Full details and data files)
- Version 1.0: 1998-05-06
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2024-04-03
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary