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Structure Alignment View

Pre-calculated jCE results for 1FSZ.A vs. 1TUB.A .
 

This page provides a summary view of the protein structure alignment.

Structure Alignment Results
Alignment Details: Query: (
 
orange/dark grey)
FTSZ
Subject: (
 
cyan/light grey)
TUBULIN
Z-score: 6.47
Score: 825.11
RMSD: 3.22
%Id: 9.5%
1FSZ
PDB ID: 1FSZ
Chain ID: A
Length: 334
Similarity: 91%
EC number:
1TUB
PDB ID: 1TUB
Chain ID: A
Length: 440
Similarity: 69%
EC number:
 
Comparison Method
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Click here to align other protein chains. Back to the all vs. all search results for 1FSZ.A or 1TUB.A
 
 
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1FSZ.A |
 
1TUB.A
 
 
 

It is also possible to view this alignment using the stand-alone Java Web Start application.

 
 
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A detailed description of the procedure for the all vs. all alignments is available.

Algorithm: The alignment displayed on this page is based on the jCE algorithm, a Java port of the original Combinatorial Extension (CE) algorithm. (Implementation by Andreas Prlić).

I.N. Shindyalov, P.E. Bourne (1998)
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. 
Protein Eng 11: 739-747
[pdf  ]

RCSB PDB Comparison Tool Reference
Andreas Prlić; Spencer Bliven; Peter W. Rose; Wolfgang F. Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (2010)
Pre-calculated protein structure alignments at the RCSB PDB website
Bioinformatics 26: 2983-2985
[PubMed]

For more information on the algorithms see here.