Java PDB viewer designed to display and analyze structural information.
- Internet Explorer 6.0 on Windows XP
- Safari on Mac OS 10.3.3
- Mozilla 1.6 on Linux (Redhat 8.0)
- Java 1.4+
- CPU: 400 MHz
- RAM: 128 MB
The sequence viewer displays the amino acid sequence of a particular structure. The left side is the label of the chain. Clicking on this label displays the chain color options.
This allows the user to change visibility or color of the chain in the sequence viewer and the structure viewer.
Individual residues my be highlighted by clicking and dragging in the sequence window. To change the selection color click on the selection color box in the control panel window. The residue count highlights how many residues have been highlighted.
The control panel contains several options for displaying chains based on calculated values and residue properties.
For example: To highlight a chain based on Residue B Factor, select a chain under the Chain IDs label. Then select a choice under the Calculated Values option. The corresponding chain color will change in the sequence viewer and the structure viewer according to these values:
Reset will reload the structure to its original state.
|Rotate Around||Left Click and Drag|
Move along X,Y
|Ctrl + Left Click and Drag|
|Zoom In / Out||Alt + Left Click and Drag|
|Select||Click on a vertex to select the residue. This will select the corresponding residue in the sequence viewer.|