The chemical structure can be drawn in the form of a chemical diagram and will be checked against all small molecules in the wwPDB chemical component dictionary that can be found in PDB structures as free ligands (not part of a polymeric chain of a protein or nucleic acid) or as non-standard residues (modified amino acids or nucleotides).
In the results page you will get all the PDB structures with such chemical components and in the "Ligand Hits" tab, the small molecules that matched.
In the "Chemical Structure Search" page you can load the chemical diagram of an existing chemical component and use it as a starting point, while whenever you come back to the page it will automatically load the last chemical diagram that you used.
SMILES™ (Simplified Molecular Input Line Entry Specification) is a linear notation for describing chemical structures.
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.