The Protein Feature View provides a graphical summary of a
full-length protein sequence from UniProt and how it relates to PDB
entries. It also loads annotations from external databases such as
Pfam domain annotations, or
regions for which homology models are available from the Protein
Model Portal. There are also tracks of annotations available that
visualize predicted regions of protein disorder (computed with JRONN)
and hydrophobic regions, as computed using a sliding window approach.
Predicted disordered and hydrophobic regions are in red, ordered and
hydrophilic regions are in blue.
By default representative PDB entries are being displayed that give
an overview for which regions of the
UniProtKB sequence PDB entries
are available. The view can be expanded to show all available PDB
entries (which can be many in some cases) by pressing the
"+" icon or by selecting the "Extended" menu
View An example Protein Feature View.
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
RCSB PDB is a member of the
The RCSB PDB is funded by a grant from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.