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Sequence Analysis Resources
BLAST
Basic Local Alignment Tool with interfaces at:
FASTA
Implementations of FASTA (Pearson and Lipman) sequence alignment method at:
The MEME Suite
Motif-based sequence analysis tools.
PROSITE
Detection of sequence patterns with interfaces at ExPASy (Switzerland).
Smith-Waterman
Implementations of Smith-Waterman sequence alignment at:
ENDscript
A Web server for searching homologous sequences and giving information on secondary structure elements, accessibility, hydropathy and protein-protein contacts
ESPript
Easy Sequencing in Postscript