The software program PDB_EXTRACT was developed to assist depositors
in the automatic preparation of crystallographic depositions. This
software tool extracts information for deposition from the output
files produced by many applications used for structure determination.
Current versions of the following programs are supported: HKL 2000,
SCALEPACK, d*TREK, SOLVE, MLPHARE, SHARP/autoSHARP,
SHELXD/SHELXE/SHELXL, PHASES, SnB, BnP, DM, Solomon, RESOLVE, CNS,
REFMAC, RESTRAIN, TNT, and WARP. PDB_EXTRACT will also be part of the
CCP4 Program Suite (version 5).
Files produced by PDB_EXTRACT can be edited on a local Linux
workstation using the downloadable version of ADIT, which has
been extended to provide access to the large amount of data
collected by the PDB_EXTRACT program.
PDB_EXTRACT can be downloaded in source and binary versions for
Linux, SGI, SUN, OSF and Mac OSX from
deposit.pdb.org/software. Source and Linux binary versions
of ADIT are also available.
Questions and comments may be sent to firstname.lastname@example.org.
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.