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HEADLINES
No. 20 Winter 2004 FRONT PAGE Message from the RCSB PDB Announcing the Worldwide Protein Data Bank Downloadable PDB_EXTRACT Makes Deposition Easier Biological Unit Tutorial Now Available from the RCSB PDB Ligand Depot--a Small Molecule Information Resource PDB Focus: Deposition and Release Policies PDB Deposition Statistics Lucene Keyword Search Released on the RCSB PDB Web Site PDB Focus: Redundancy Reduction Cluster Data Available on the PDB FTP Site PDB Focus: Searching for Experimental Data Files Updates of mmCIF Files on the RCSB PDB FTP Site RCSB PDB Web Site Statistics NIGMS News: PSI-2 and Structural Biology Roadmap RFA RCSB PDB Article Published in Nucleic Acids Research New Update Release of CD-ROM Sets PDB Molecules of the Quarter: Trypsin, Simian Virus 40, and Catabolite Activator Protein PDB Community Focus: Edward N. Baker PDB Education Corner by Katherine Kantardjieff Related Links: FTP Resources RCSB PDB Job Listings RCSB PDB Members & Statement of Support Questions? info@rcsb.org © 2004 RCSB PDB
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Downloadable PDB_EXTRACT Makes Deposition EasierThe software program PDB_EXTRACT was developed to assist depositors in the automatic preparation of crystallographic depositions. This software tool extracts information for deposition from the output files produced by many applications used for structure determination. Current versions of the following programs are supported: HKL 2000, SCALEPACK, d*TREK, SOLVE, MLPHARE, SHARP/autoSHARP, SHELXD/SHELXE/SHELXL, PHASES, SnB, BnP, DM, Solomon, RESOLVE, CNS, REFMAC, RESTRAIN, TNT, and WARP. PDB_EXTRACT will also be part of the CCP4 Program Suite (version 5). Files produced by PDB_EXTRACT can be edited on a local Linux workstation using the downloadable version of ADIT, which has been extended to provide access to the large amount of data collected by the PDB_EXTRACT program. PDB_EXTRACT can be downloaded in source and binary versions for Linux, SGI, SUN, OSF and Mac OSX from deposit.pdb.org/software. Source and Linux binary versions of ADIT are also available. Questions and comments may be sent to help@rcsb.rutgers.edu. |
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