After a period of testing at the PDB beta test site, select components of STING Millennium Suite (SMS) are now available from the Structure Explorer pages of the primary PDB Web site and its mirrors. SMS, a set of Java-based tools for the simultaneous display of information about macromolecular structure and sequence, was developed by Dr. Goran Neshich of Embrapa-CNPTIA (Campinas, Brazil) and colleagues, in collaboration with Dr. Barry Honig's laboratory at Columbia University in New York City, NY. The SMS links from the PDB site are served by an SMS mirror that is being maintained at the San Diego Supercomputer Center.
The "Sequence Details" and "View Structure" sections of the Structure Explorer now link to two interactive
structure and sequence SMS views for any PDB structure, which include options to access features such as
a graphical display of amino acid contacts; these views require Chime and a Java-enabled Web browser. A
simpler "Protein Dossier" view is also available from the "Sequence Details" section, offering a static graphical
summary of sequence-and structure-based properties, such as relative entropy and temperature factors.
The "Geometry" section of the Structure Explorer now links to a Ramachandran plot for each PDB entry,
also served from SMS, with options including the inter-connection of data in a dihedral angle plot with the
3-D structure of the molecule. This view also requires Java and Chime. SMS is also accessible from the
"Other Sources" section of the Structure Explorer for each PDB entry, under the category of Visualization
Further information about this suite of tools is available from the SMS home page at
http://mirrors.rcsb.org/SMS/, and at http://www.rcsb.org/pdb/help-results.html. Comments may be sent to firstname.lastname@example.org.
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.