The PDB Validation Suite is a set of programs that create validation reports about 3-D structure data. It is designed to work with files in mmCIF or PDB format.
The beta version of this software can be downloaded in binary form for SGI, SUN, and Linux platforms from http://pdb.rutgers.edu/software/.
This software is used in the Validation step of ADIT (AutoDep Input Tool) at http://pdb.rutgers.edu/adit/ and at the Validation Server at http://pdb.rutgers.edu/validate/.
Reports produced include an Atlas entry, a summary report, and a collection of structural diagnostics including bond distance and angle comparisons, torsion angle comparisons, base morphology comparisons (for nucleic acids), and molecular graphic images. In addition, reports from PROCHECK1, NUCheck2, and SFCHECK3 are also made available.
Questions, comments, and suggestions should be sent to email@example.com.
1R.A. Laskowski, M.W. McArthur, D.S. Moss, J.M. Thornton (1993): PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 265, pp. 283-291.
2Z. Feng, J. Westbrook, H.M. Berman (1998): NUCheck. NDB-407 Rutgers University, New Brunswick, NJ.
3A.A. Vaguine, J. Richelle, S.J. Wodak (1999): SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model. Acta Crystallogr. D55, pp. 191-205.
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
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The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.