A publication promoting quality education in biochemistry and molecular biology, and related fields; includes articles on teaching techniques and practices, methods of assessment of educational approaches, research in education, reviews, and details of laboratory experiments
Audience: Undergraduate/graduate educators
An introduction to the nuclear magnetic resonance experimental method
by Joseph P. Hornak, Ph.D.
Audience: Undergraduate
Review of key concepts from the Biochemistry (5th edition) textbook through interactive exercises, animated 3D tutorials, online quizzes and other learning tools
by Stryer Biochemistry and Molvisions
Audience: Undergraduate students and educators
A tool for creating and viewing dynamic, formatted structure annotations
by Peng Yang, Paul A. Craig, Philip E. Bourne, David Goodsell
Audience: Undergraduate/graduate student, educator, and researcher
An introduction to the field and tools used in bioinformatics, using human opsins as a case study
by Gale Rhodes
Audience: Undergraduate educator, student, researcher
An introduction to the use of the database search and analysis tools of the Biology Workbench for learning and teaching biology at all levels; includes enganging activities and curricular materials
by the NCSA Molecular Biology Application Technologies Team, the NCSA Education, Outreach, and Training Division, and EOT PACI partners
Audience: K-12, undergraduate/graduate student, educator, researcher, and the general public
A searchable collection of peer-reviewed digital resources, including high quality instructional materials and learning objects--software, visual resources, curricular resources, article and reviews
by the American Society for Biochemistry and Molecular Biology (ASBMB)
Audience: Educator (undergraduate, graduate, medical school)
A portal to the digital library of the biological sciences for biology teaching
by the BEN Collaborative and the American Association for the Advancement of Science
Audience: Educator (undergraduate, graduate, medical school)
Series of short lessons in crystallography for educators
by the Commission on Crystallographic Teaching
Audience: Educator (undergraduate, graduate, professional school)
An introductory course
by Bernhard Rupp
Audience: Undergraduate/graduate student, educator, and researcher
Explains the economic payoffs of untargeted research and its role in the development of new medicines, technologies, and scientific tools. It also emphasizes the importance of scientific collaboration; model organisms, including animals, in research; and lists recent Nobel laureates in basic sciences. This document is available in HTML and PDF formats.
A set of seven standardized, intuitive color schemes applicable to macromolecular structures and designed for online use
by U. Mass. Molecular Visualization Group and Molvisions
Audience: Undergraduate/graduate student, educator, and researcher
A series of FREE interactive learning tools, including a PDB tutorial on the Molecular Science CD-ROM, and the SHAPES 3-D geometry program
by San Diego Supercomputer Center and NPACI
Audience: K-12 student and educator
A distributed computing project which studies protein folding, misfolding, aggregation, and related diseases.
by Vijay Pande and Stanford University
Audience: Undergraduate student and educator
Video of lecture presented to the Biophysical Society; requires Real Player or Windows Media Player
by Janet Thornton, European Bioinformatics Institute
Audience: Graduate, Researcher
A general approach to predicting protein 3D structure
by Rob Russell and EMBL
Audience: Undergraduate/graduate student, educator, and researcher
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Applet that facilitates learning about structure factors, phases, symmetry, and the relationship between the structure factors and the electron density map
by Kevin Cowtan
Audience: Undergraduate students and educators
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- Introduction to Molecular Modeling
A beginner's tutorial on using RasMol
by Gale Rhodes
Audience: General
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A beginner's guide to viewing PDB molecules with RasTop
by Jey Kottalam
Audience: High school student
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An illustrated glossary of crystallographic and NMR terminology
by Gale Rhodes
Audience: Undergraduate
Excercises using the Swiss-PDB Viewer
by Gale Rhodes
Audience: Undergraduate educator and student
Why and How to Integrate Molecular Graphics into Introductory Biochemistry
by Gale Rhodes
Audience: Undergraduate educator
A 2-sided, 8 1/2" x 11" quick reference guide featuring 75 select structures from the PDB drawn at a relative scale. Also available in (31MB download)
by David S. Goodsell
Audience: General
A tutorial on using the Swiss-PDB Viewer
by Gale Rhodes
Audience: General
Series of short articles on biological molecules that are involved in cancer and its treatment, featured in The Oncologist and Stem Cells journals
by David S. Goodsell
Audience: General
Interactive video-based lessons to understand basic structural properties based on images, identifying components of the blood, and building heme groups and peptides
by San Diego Supercomputer Center and NPACI
Audience: K-12 student and educator, general
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The Nobel e-Museum provides educational games based upon Nobel Prizes in Chemistry, including an X-ray Diffraction Lab in The Virtual Biochemistry Laboratory.
Illustrated presentations of Nobel Prizes in Chemistry are also available.
A site for the display and study of macromolecules. Requires Netscape 3.01 or better and the free Chime plug-in.
by David Marcey et al.
Audience: General
A search interface for the novice user
by Eric Martz
Audience: General
Molecular visualization for beginners. Has extensive built-in help and tutorials. Requires 3.01 or better and the free Chime plug-in.
by Eric Martz
Audience: General
Links to a variety of biology activites and lessons.
by Various authors
Audience: K-12
An introduction to querying the PDB, interpreting PDB files, and using RasMol to analyze PDB structures. U.Conn. School of Pharmacy course material (please cite author and institution when redistributing).
by David G. Rhodes
Audience: Undergraduate
Resources used in hands-on workshops in molecular graphics at USM
by Gale Rhodes
Audience: Undergraduate educator, undergraduate student, AP bio and chemistry high school students and teachers, researcher
Subject and author indices for tutorials with molecular graphics in biochemistry, organic chemistry, inorganic chemistry and crystals, methods for using Chime, K-12 resources, Deep View, sources of PDB files (e.g. for small molecules, lipid bilayers, crystals, single chains, virus capsids, etc.), galleries of molecular images, email lists and newsgroups, non-English resources, free and commercial software for molecular visualization. Visitors to this site can add or edit indexed listings.
by Eric Martz and Trevor D. Kramer
Audience: General
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