Custom Report Web Services and The Field List

The services support both GET and POST requests. The followings are the two Java examples using GET and POST services.

The RESTful URL examples

The Report Name and Field Name List

Report Name Field Name PDBx/mmCIF Item Name
Structure Summary Report (StructureSummary) atomSiteCount _refine_hist.number_atoms_total
  structureAuthor _audit_author.name
  classification _struct_keywords.pdbx_keywords
  depositionDate _database_PDB_rev.date_original
  experimentalTechnique _exptl.method
  macromoleculeType _entity_poly.type
  ndbId _database_2.database_code
  pdbDoi n/a
  releaseDate _database_PDB_rev.date
  residueCount struct_asyms and entity_poly_seqs
  resolution _refine.ls_d_res_high
  revisionDate _database_PDB_rev.date
  structureMolecularWeight _entity.formula_weight and _entity.pdbx_number_of_molecules
  structureTitle _struct.title
Sequence Report (Sequence) chainLength length(_entity_poly.pdbx_seq_one_letter_code_can)
  db_code _struct_ref.db_code and _struct_ref.pdbx_db_accession
  db_name _struct_ref.db_name
  entityId _struct_ref.entity_id
  entityMacromoleculeType _entity_poly.type
  kabschSander n/a
  molecularWeight _entity.formula_weight
  sequence _entity_poly.pdbx_seq_one_letter_code_can
Ligand Report (Ligands) InChI _pdbx_chem_comp_descriptor.descriptor (condition _pdbx_chem_comp_descriptor.type=InChI)
  InChIKey _pdbx_chem_comp_descriptor.descriptor (condition _pdbx_chem_comp_descriptor.type=InChIKey)
  ligandFormula _chem_comp.formula
  ligandId _pdbx_nonpoly_scheme.mon_id
  ligandImage n/a
  ligandMolecularWeight _chem_comp.formula_weight
  ligandName _chem_comp.name
  ligandSmiles _pdbx_chem_comp_descriptor.descriptor (condition: _pdbx_chem_comp_descriptor.type=SMILES)
Binding Affinity Report (BindingAffinity) EC50 n/a
  IC50 n/a
  Ka n/a
  Kd n/a
  Ki n/a
  deltaG n/a
  deltaH n/a
  deltaS n/a
  hetId n/a
Biological Detail Report (BiologicalDetails) biologicalProcess n/a
  cellularComponent n/a
  compound _entity.pdbx_description
  ecNo _entity.pdbx_ec
  expressionHost entity_src_gen.pdbx_host_org_scientific_name
  molecularFunction n/a
  plasmid entity_src_nat.pdbx_plasmid_name or entity_src_gen.plasmid_name
  source _entity_src_nat.pdbx_organism_scientific or _entity_src_gen.pdbx_gene_src_scientific_name
  taxonomyId _entity_src_nat.pdbx_ncbi_taxonomy_id or _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
Cluster Entity Report (ClusterEntity) authorAssignedEntityName _entity.pdbx_description
  clusterNumber100 n/a
  clusterNumber30 n/a
  clusterNumber40 n/a
  clusterNumber50 n/a
  clusterNumber70 n/a
  clusterNumber90 n/a
  clusterNumber95 n/a
  entityId _entity.id
  geneName n/a
  idNum n/a
  rankNumber100 n/a
  rankNumber30 n/a
  rankNumber40 n/a
  rankNumber50 n/a
  rankNumber70 n/a
  rankNumber90 n/a
  rankNumber95 n/a
  synonym _entity_name_com.name
  taxonomy -
  taxonomyId -
  uniprotAcc n/a
  uniprotAlternativeNames n/a
  uniprotRecommendedName n/a
Domains Report (Domains) cathDescription n/a
  cathId n/a
  pfamAccession n/a
  pfamDescription n/a
  pfamId n/a
  scopDomain n/a
  scopFold n/a
  scopId n/a
Crystallization Report (Crystallization) crystallizationMethod _exptl_crystal_grow.method
  crystallizationTempK _exptl_crystal_grow.temp
  densityMatthews _exptl_crystal.density_Matthews
  densityPercentSol _exptl_crystal.density_percent_sol
  pdbxDetails _exptl_crystal_grow.pdbx_details
  phValue _exptl_crystal_grow.pH
Unit Cell Dimension Report (UnitCellDimensions) Z_PDB _cell.Z_PDB
  lengthOfUnitCellLatticeA _cell.length_a
  lengthOfUnitCellLatticeB _cell.length_b
  lengthOfUnitCellLatticeC _cell.length_c
  spaceGroup _symmetry.space_group_name_H-M
  unitCellAngleAlpha _cell.angle_alpha
  unitCellAngleBeta _cell.angle_beta
  unitCellAngleGamma _cell.angle_gamma
Data Collection Detail Report (DataCollectionDetails) collectionDate _diffrn_detector.pdbx_collection_date
  collectionTemperature _diffrn.ambient_temp
  device _diffrn_detector.type
  diffractionSource _diffrn_source.type
  diffrnId _diffrn.id
Refinement Detail Report (RefinementDetails) averageBFactor _refine.B_iso_mean
  rAll _refine.ls_R_factor_all
  rFree _refine.ls_R_factor_R_free
  rObserved _refine.ls_R_factor_obs
  rWork _refine.ls_R_factor_R_work
  refinementResolution _refine.ls_d_res_high
Refinement Parameter Report (refinementParameters) highResolutionLimit _refine.ls_d_res_high
  reflectionsForRefinement _refine.ls_number_reflns_obs
  structureDeterminationMethod _refine.pdbx_method_to_determine_struct
Software Report (NmrSoftware) authors pdbx_nmr_software.authors
  name _pdbx_nmr_software.name _software.name _computing.data_collection _computing.data_reduction _computing.data_reduction_ds _computing.data_reduction_ii
  version _pdbx_nmr_software.version
NMR Spectrometer Report (NmrSpectrometer) fieldStrength _pdbx_nmr_spectrometer.field_strength
  manufacturer _pdbx_nmr_spectrometer.manufacturer
  model _pdbx_nmr_spectrometer.model
nmrExperimentalSampleConditions Report (NMRExperimentalSampleConditions) contents _pdbx_nmr_sample_details.contents
  ionicStrength _pdbx_nmr_exptl_sample_conditions.ionic_strength
  ph _pdbx_nmr_exptl_sample_conditions.pH
  pressure _pdbx_nmr_exptl_sample_conditions.pressure
  pressureUnits _pdbx_nmr_exptl_sample_conditions.pressure_units
  solventSystem _pdbx_nmr_sample_details.solvent_system
  temperature _pdbx_nmr_exptl_sample_conditions.temperature
  type _pdbx_nmr_exptl.type
NMR Representative Report (NmrRepresentative) conformerId _pdbx_nmr_representative.conformer_id
  selectionCriteria _pdbx_nmr_representative.selection_criteria
NMR Refine Report (NMRRefinement) details _pdbx_nmr_refine.details
  method _pdbx_nmr_refine.method
NMR Ensemble Report (NmrEnsemble) conformerSelectionCriteria _pdbx_nmr_ensemble.conformer_selection_criteria
  totalConformersCalculated _pdbx_nmr_ensemble.conformers_calculated_total_number
  totalConformersSubmitted _pdbx_nmr_ensemble.conformers_submitted_total_number
EM Structure Report (EMStructure) emResolution _em_3d_reconstruction.resolution
  emDiffractionResolution _em_diffraction_stats.high_resolution
  reconstructionMethod _em_experiment.reconstruction_method
  symmetryType _em_3d_reconstruction.symmetry_type
  pointSymmetry _em_single_particle_entity.point_symmetry
  aggregationState _em_experiment.aggregation_state
  embedding _em_specimen.embedding_applied
  staining _em_specimen.staining_applied
  vitrification _em_specimen.vitrification_applied
  emdbMap _pdbx_database_related.db_id (condition _pdbx_database_related.content_type='associated EM volume')
  additionalMap _pdbx_database_related.db_id (condition _pdbx_database_related.content_type='other EM volume')
Citation Report (Citation) abstractTextShort n/a
  citationAuthor _citation_author.name
  doi n/a
  firstPage _citation.page_first
  journalName _citation.journal_abbrev
  lastPage _citation.page_last
  meshTerms n/a
  pmc n/a
  publicationYear _citation.year
  pubmedId _citation.pdbx_database_id_PubMed
  title _citation.title
  volumeId _citation.journal_volume
Other Citation Report (OtherCitations) citationAuthor _citation_author.name
  firstPage _citation.page_first
  journalName _citation.journal_abbrev
  pmc n/a
  publicationYear _citation.year
  pubmedId _citation.pdbx_database_id_PubMed
  title _citation.title
  volumeId _citation.journal_volume
Structural Genomics Centers Report (SGProject) centerInitial _pdbx_SG_project.initial_of_center
  centerName _pdbx_SG_project.full_name_of_center
  projectName _pdbx_SG_project.project_name