BLASTP 2.2.18 [Mar-02-2008]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, 
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= UNKNOWN_SEQUENCE
         (472 letters)

Database: pdb_polypeptide 
           202,155 sequences; 49,994,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

5CWS:4:D,J|pdbid|entity|chain(s)|sequence                              39   0.026
2LLZ:1:A|pdbid|entity|chain(s)|sequence                                31   5.8  
5I7D:1:A,B|pdbid|entity|chain(s)|sequence                              30   8.4  
5I6J:1:A|pdbid|entity|chain(s)|sequence                                30   8.4  
5I6R:1:A|pdbid|entity|chain(s)|sequence                                30   8.9  
>5CWS:4:D,J|pdbid|entity|chain(s)|sequence
          Length = 227

 Score = 38.5 bits (88), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 27/165 (16%)

Query: 273 IRQEIEQLDQYIQKQVQISHHLKADTIDHDELIDSIPRDVAYLLKSESATSQYLKQDLKK 332
           ++QEI ++D+ IQK ++    + A    H E + +IP DV ++ +        L  D+  
Sbjct: 5   LQQEIAKIDEEIQKCIRDKEAVDAFLPAHGEQLAAIPTDVNFVTRKSEGAHNALSSDILA 64

Query: 333 ISSFKSLIDEDLLDTQTFSVLLQQLLTP---------------------------GSKIS 365
           I   + L+ +D  + +     +  L  P                               S
Sbjct: 65  IDQLRELVKQDADNARLSFKAIDNLKLPMQYHQAGLWSKQMGGAGTAGASGASADADGQS 124

Query: 366 SNDLDKFFQKKIHLYEKKLEDYCRILSDIETAVNGIDTDLFGAPN 410
           + DL  +F K     E+ ++ + + +++IE  + G++       N
Sbjct: 125 NADLISYFSKTADEMEEMMKKFEKTITEIEAHLTGVEAHAMAMQN 169
>2LLZ:1:A|pdbid|entity|chain(s)|sequence
          Length = 100

 Score = 30.8 bits (68), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 399 NGIDTDLFGAPN--NPNSTAITADLGSSEAENLLQLK 433
           + I  D +G P   N NS AIT  L +SE E+L++LK
Sbjct: 39  SSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLK 75
>5I7D:1:A,B|pdbid|entity|chain(s)|sequence
          Length = 484

 Score = 30.0 bits (66), Expect = 8.4,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 264 TRISELPPQIRQEIEQLDQYIQKQVQISHHLKADTIDHDELIDSIPRDVA-----YLLKS 318
           T++ E+  Q+ ++++ LDQ  + +VQ+   L+       E+     R++      +L K+
Sbjct: 19  TQVKEIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKT 78

Query: 319 ESATSQYLKQD---LKKISSFKSLIDE---DLLDTQTFSVLLQQLLTPGSKISSNDLDKF 372
            S   Q  K+D   L  ++ +  L+++   +  D  T S +    + P     S D  + 
Sbjct: 79  RSTKDQQFKKDQNVLSPVNCWNLLLNQVKRESRDHTTLSDIYLNNIIPRFVQVSEDSGRL 138

Query: 373 FQKKIHLYEKKLEDYCRILSDI 394
           F+K   + ++  +D  ++L+++
Sbjct: 139 FKKSKEVGQQLQDDLMKVLNEL 160
>5I6J:1:A|pdbid|entity|chain(s)|sequence
          Length = 484

 Score = 30.0 bits (66), Expect = 8.4,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 264 TRISELPPQIRQEIEQLDQYIQKQVQISHHLKADTIDHDELIDSIPRDVA-----YLLKS 318
           T++ E+  Q+ ++++ LDQ  + +VQ+   L+       E+     R++      +L K+
Sbjct: 19  TQVKEIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKT 78

Query: 319 ESATSQYLKQD---LKKISSFKSLIDE---DLLDTQTFSVLLQQLLTPGSKISSNDLDKF 372
            S   Q  K+D   L  ++ +  L+++   +  D  T S +    + P     S D  + 
Sbjct: 79  RSTKDQQFKKDQNVLSPVNCWNLLLNQVKRESRDHTTLSDIYLNNIIPRFVQVSEDSGRL 138

Query: 373 FQKKIHLYEKKLEDYCRILSDI 394
           F+K   + ++  +D  ++L+++
Sbjct: 139 FKKSKEVGQQLQDDLMKVLNEL 160
>5I6R:1:A|pdbid|entity|chain(s)|sequence
          Length = 484

 Score = 30.0 bits (66), Expect = 8.9,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 264 TRISELPPQIRQEIEQLDQYIQKQVQISHHLKADTIDHDELIDSIPRDVA-----YLLKS 318
           T++ E+  Q+ ++++ LDQ  + +VQ+   L+       E+     R++      +L K+
Sbjct: 19  TQVKEIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKT 78

Query: 319 ESATSQYLKQD---LKKISSFKSLIDE---DLLDTQTFSVLLQQLLTPGSKISSNDLDKF 372
            S   Q  K+D   L  ++ +  L+++   +  D  T S +    + P     S D  + 
Sbjct: 79  RSTKDQQFKKDQNVLSPVNCWNLLLNQVKRESRDHTTLSDIYLNNIIPRFVQVSEDSGRL 138

Query: 373 FQKKIHLYEKKLEDYCRILSDI 394
           F+K   + ++  +D  ++L+++
Sbjct: 139 FKKSKEVGQQLQDDLMKVLNEL 160
  Database: pdb_polypeptide
    Posted date:  Sep 15, 2017  6:19 PM
  Number of letters in database: 49,994,932
  Number of sequences in database:  202,155
  
Lambda     K      H
   0.313    0.130    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 202155
Number of Hits to DB: 30,264,297
Number of extensions: 960816
Number of successful extensions: 2042
Number of sequences better than 10.0: 10
Number of HSP's gapped: 2101
Number of HSP's successfully gapped: 10
Length of query: 472
Length of database: 49,994,932
Length adjustment: 111
Effective length of query: 361
Effective length of database: 27,555,727
Effective search space: 9947617447
Effective search space used: 9947617447
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)