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Vimentin - P08670 (VIME_HUMAN)

 

Protein Feature View of PDB entries mapped to a UniProtKB sequence  

Number of PDB entries for P08670: 16
 
Function
Vimentins are class-III intermediate filaments found in various non-epithelial cells, especially mesenchymal cells. Vimentin is attached to the nucleus, endoplasmic reticulum, and mitochondria, either laterally or terminally. (data source: UniProt  )
Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2. (data source: UniProt  )
Subunit structure
Homopolymer assembled from elementary dimers. Interacts with HCV core protein. Interacts with LGSN and SYNM. Interacts (via rod region) with PLEC (via CH 1 domain). Interacts with SLC6A4. Interacts with STK33. Interacts with LARP6. Interacts with RAB8B. Interacts with TOR1A; the interaction associates TOR1A with the cytoskeleton. Interacts with TOR1AIP1. (data source: UniProt  )
Domain
The central alpha-helical coiled-coil rod region mediates elementary homodimerization. (data source: UniProt  )
UniProtKB:
Species: 
Length:
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Data origin/color codes
The vertical color bar on the left side indicates data provenance.
Data in green originates from UniProtKB  
Data in yellow originates from Pfam  , by interacting with the HMMER3 web site  
Data in orange originates from the SCOP   (version 1.75) and SCOPe   (version 2.04) classifications.
Data in grey has been calculated using BioJava  . Protein disorder predictions are based on JRONN (Troshin, P. and Barton, G. J. unpublished), a Java implementation of RONN  
  • Red: potentially disorderd region
  • Blue: probably ordered region.
Hydropathy has been calculated using a sliding window of 15 residues and summing up scores from standard hydrophobicity tables.
  • Red: hydrophobic
  • Blue: hydrophilic.
Data in lilac represent the genomic exon structure projected onto the UniProt sequence.
Data in blue originates from PDB
  • Secstruc: Secondary structure projected from representative PDB entries onto the UniProt sequence.
Data in red indicates combined ranges of Homology Models from SBKB   and the Protein Model Portal  

The PDB to UniProt mapping is based on the data provided by the EBI SIFTS project. See also Velankar et al., Nucleic Acids Research 33, D262-265 (2005).