RNA2 polyprotein - P03599 (POL2_CPMVS)

 

Protein Feature View of PDB entries mapped to a UniProtKB sequence  

  • Number of PDB entries for P03599: 7
 
Function
VP58: Responsible for viral RNA2 accumulation. May function by recruiting the RNA1-encoded polyprotein that contains the replication protein to RNA2 and enable its replication. UniProt
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Subunit Structure
Mature small capsid protein: Interacts with the large capsid protein (PubMed:26657148, PubMed:10603314). Large capsid protein: Interacts with the mature small capsid protein (PubMed:26657148, PubMed:27021160, PubMed:28373698, PubMed:10603314). Large capsid protein: Homomultimer; assembles as pentons (PubMed:26657148, PubMed:27021160, PubMed:28373698). Large capsid protein: Interacts with the movement protein (via C-terminus) (PubMed:12867661). Movement protein: Interacts (via C-terminus) with the large capsid protein (PubMed:12867661). UniProt
Domain
Movement protein: The C-terminus is involved in binding to the large capsid protein, and hence to the virion. UniProt
  • Isoforms: 2 , currently showing only the 'canonical' sequence.
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Data in green originates from UniProtKB  
Variation data (sourced from UniProt) shows non-genetic variation from the ExPASy   and dbSNP   websites.
Data in yellow originates from Pfam  , by interacting with the HMMER3 web site  
Data in purple originates from Phosphosite  .
Data in orange originates from the SCOP   (version 1.75) and SCOPe   (version 2.04) classifications.
Data in grey has been calculated using BioJava  . Protein disorder predictions are based on JRONN (Troshin, P. and Barton, G. J. unpublished), a Java implementation of RONN  
  • Red: potentially disorderd region
  • Blue: probably ordered region.
Hydropathy has been calculated using a sliding window of 15 residues and summing up scores from standard hydrophobicity tables.
  • Red: hydrophobic
  • Blue: hydrophilic.
Data in lilac represent the genomic exon structure projected onto the UniProt sequence.
Data in blue originates from PDB
  • Secstruc: Secondary structure projected from representative PDB entries onto the UniProt sequence.
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Validation Track

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Data in red indicates combined ranges of Homology Models from SBKB   and the Protein Model Portal  
The PDB to UniProt mapping is based on the data provided by the EBI SIFTS project. See also Velankar et al., Nucleic Acids Research 33, D262-265 (2005).
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