D3N

1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-perimidin-2(3H)-one

D3N is found in 2 entries

D3N in polymers: 2 entries. Examples include: 2M11, 4HQI,

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View summary at Ligand Expo

Chemical Component Summary

Name 1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-perimidin-2(3H)-one
Identifiers [(2R,3S,5R)-3-oxidanyl-5-(2-oxidanylidene-3H-perimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate
Formula C16 H17 N2 O7 P
Molecular Weight 380.29 g/mol
Type DNA linking
Isomeric SMILES O[C@H]1C[C@@H](O[C@@H]1COP(O)(O)=O)n1c2cccc3cccc([nH]c1=O)c23
InChI InChI=1S/C16H17N2O7P/c19-12-7-14(25-13(12)8-24-26(21,22)23)18-11-6-2-4-9-3-1-5-10(15(9)11)17-16(18)20/h1-6,12-14,19H,7-8H2,(H,17,20)(H2,21,22,23)/t12-,13+,14+/m0/s1
InChI Key SQPAXPCPGSJUFJ-BFHYXJOUSA-N

Chemical Details

Formal Charge 0
Atom Count 43
Chiral Atom Count 3
Chiral Atoms C4' C3' C1'
Bond Count 46
Aromatic Bond Count 11
Leaving Atoms OP3 H2