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Publications

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  • Recommendations of the wwPDB NMR Validation Task Force
    (2013) Structure 21: 1563-1570 doi:10.1016/j.str.2013.07.021

  • How community has shaped the Protein Data Bank
    (2013) Structure 21: 1485-1491 doi:10.1016/j.str.2013.07.010

  • Revealing structural views of biology
    (2013) Biopolymers 99: 817-824 doi:10.1002/bip.22338

  • Report of the wwPDB Small-Angle Scattering Task Force: Data Requirements for Biomolecular Modeling and the PDB Structure
    (2013) Structure 21: 875-881 doi:10.1016/j.str.2013.04.020

  • Trendspotting in the Protein Data Bank
    (2013) FEBS Lett. 587: 1036-45 doi:10.1016/j.febslet.2012.12.029

  • The Future of the Protein Data Bank
    (2013) Biopolymers 99: 218-222 doi:10.1002/bip.22132

  • The RCSB Protein Data Bank: new resources for research and education
    (2013) Nucleic Acids Research 41: D475-D482 doi:10.1093/nar/gks1200

  • Illustrating the Machinery of Life: Viruses
    (2012) Biochemistry and Molecular Biology Education 40: 291-296 doi:10.1002/bmb.20636

  • Putting proteins in context: scientific illustrations bring together information from diverse sources to provide an integrative view of the molecular biology of cells
    (2012) Bioessays 34(9):718-20 doi:10.1002/bies.201200072

  • Creating a community resource for protein science
    (2012) Protein Science 21: 1587-1596 doi:10.1002/pro.2154

  • BioJava: an open-source framework for bioinformatics in 2012
    (2012) Bioinformatics 28: 2693-2695 doi:10.1093/bioinformatics/bts494

  • Outcome of the first electron microscopy validation task force meeting
    (2012) Structure 20: 205-214 doi:10.1016/j.str.2011.12.014

  • The Protein Data Bank at 40: Reflecting on the Past to Prepare for the Future
    (2012) Structure 20: 391-396 doi:10.1016/j.str.2012.01.010

  • The Worldwide Protein Data Bank
    In International Tables for X-Ray Crystallography, Volume F: Crystallography of biological macromolecules
    E. Arnold, D. M. Himmel & M. G. Rossmann, editors (2012) Springer, Dordrecht, The Netherlands, pp. 827-832 doi:10.1107/97809553602060000111

  • Circular Permutation in Proteins
    (2012) PLoS Comput Bio 8: e1002445 doi:10.1371/journal.pcbi.1002445

  • Atomic evidence: the foundations of structural molecular biology
    (2011) Science Progress 94: 414-430 doi:10.3184/003685011X13201799666745

  • The evolution of the Protein Data Bank (part of special essay collection on the 40th anniversary of the PDB)
    (2011) Nature Structural & Molecular Biology 18: 1310 doi:10.1038/nsmb1211-1304

  • Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction
    (2011) Proteins: Structure, Function, and Bioinformatics 79: 6-20 doi:10.1002/prot.23196

  • A new generation of crystallographic validation tools for the Protein Data Bank
    (2011) Structure 19: 1395-1412 doi:10.1016/j.str.2011.08.006

  • The Protein Data Bank
    in Leadership in Science and Technology: A Reference Handbook, William Sims Bainbridge, editor (2012) SAGE Publications, Inc., Thousand Oaks, CA., volume 2, pages 661-675.

  • Miniseries: Illustrating the machinery of life: Eukaryotic cell panorama
    (2011) Biochem Mol Biol Educ. 39:91-101 doi:10.1002/bmb.20494

  • The evolution of the RCSB Protein Data Bank website
    (2011) WIREs Computational Molecular Science 1: 782-789 doi:10.1002/wcms.57

  • The RCSB Protein Data Bank: site functionality and bioinformatics use cases
    (2011) NCI-Nature Pathway Interaction Database doi:10.1038/pid.2011.1

  • Quality assurance for the query and distribution systems of the RCSB Protein Data Bank
    (2011) Database doi:10.1093/database/bar003

  • The RCSB Protein Data Bank: redesigned web site and web services
    (2011) Nucleic Acids Res. 39: D392-D401 doi:10.1093/nar/gkq1021

  • The Protein Data Bank: Exploring Biomolecular Structure
    (2010) Nature Education 3:39.

  • Precalculated Protein Structure Alignments at the RCSB PDB website
    (2010) Bioinformatics 26: 2983-2985 doi: 10.1093/bioinformatics/btq572

  • Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences
    J. Appl. Cryst. (2010) 43:1224-1229 doi:10.1107/S002188981002371X

  • Getting the Most Out of the Protein Data Bank
    (2010) The Journal of Biocommunication 35: E52-E57.

  • dConsensus: a tool for displaying domain assignments by multiple structure-based algorithms and for construction of a consensus assignment
    BMC Bioinformatics (2010) 11:310. doi:10.1186/1471-2105-11-310

  • Integration of open access literature into the RCSB Protein Data Bank Using BioLit
    BMC Bioinformatics (2010) 11:220. doi:10.1186/1471-2105-11-220

  • Will Widgets and Semantic Tagging Change Computational Biology?
    PLoS Comput Biol (2010) 6(2): e1000673. doi:10.1371/journal.pcbi.1000673