TRIM54 - tripartite motif containing 54

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 1 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q9BYV2 HGNC Approved Gene Symbol: TRIM54 
Previous Symbols: RNF30 Ensembl ENSG00000138100 
Synonyms : MURF, MURF-3 Previous Names: "ring finger protein 30", "tripartite motif-containing 54"
HgncId : HGNC:16008  Omim: 606474 
Refseq: NM_187841  GenBank: AJ291714 
 
Genomic coordinates: Cytogenetic location: 2p23.3 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

TRIM54 Gene Structure

Chromosome: chr2
Genbank ID: NM_187841 Orientation: +
Length coding sequence : 1074 nucleotides.
Regionstartendregion lengthphase at end
UTR27,505,29627,505,599
Exon27,505,60027,505,7671680
Exon27,521,43527,521,6071732
Exon27,522,11327,522,2841720
Exon27,527,82727,527,922960
Exon27,528,45227,528,6852340
Exon27,528,94827,528,970232
Exon27,529,08127,529,2051251
Exon27,529,32427,529,409860
UTR27,529,41027,529,410