TOP1 - topoisomerase (DNA) I

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 15 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P11387  HGNC Approved Gene Symbol: TOP1 
Ensembl ENSG00000198900 
HgncId : HGNC:11986  Omim: 126420 
 
Genomic coordinates: Cytogenetic location: 20q12 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

TOP1 Gene Structure

Chromosome: chr20
Orientation: +
Length coding sequence : 2295 nucleotides.
Regionstartendregion lengthphase at end
UTR39,657,46139,657,707
Exon39,657,70839,657,740330
Exon39,658,07139,658,095251
Exon39,690,03439,690,130972
Exon39,704,81139,704,9341240
Exon39,706,22239,706,277562
Exon39,708,72539,708,820962
Exon39,709,80539,709,880760
Exon39,713,10239,713,2081072
Exon39,721,11239,721,2271161
Exon39,725,86039,725,9811220
Exon39,726,85539,726,9771230
Exon39,728,69639,728,8831882
Exon39,729,84939,729,9931450
Exon39,741,42239,741,5651440
Exon39,742,61039,742,7951860
Exon39,744,01139,744,079690
Exon39,744,91839,745,0321151
Exon39,746,80939,746,9361280
Exon39,750,33639,750,430952
Exon39,750,64639,750,7951502
Exon39,751,83539,751,9371030
UTR39,751,93839,753,126