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TARDBP - TAR DNA binding protein

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 4 View list of all current human gene IDs
View protein features Protein Feature View
Cross References for TAR DNA binding protein
UniProt: Q13148  HGNC Approved Gene Symbol: TARDBP 
Ensembl ENSG00000120948 
Synonyms : TDP-43, ALS10
HgncId : HGNC:11571  Omim: 605078 
Refseq: NM_007375  GenBank: U23731 
 
Genomic coordinates (GRCh37)
Cytogenetic location: 1p36.22  reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red,G: black, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

TARDBP Gene Structure

Chromosome: chr1
Orientation: +
Length coding sequence : 1242 nucleotides.
Regionstartendregion lengthphase at end
UTR11,073,77211,073,784
Exon11,073,78511,074,0222381
Exon11,076,90111,077,0641640
Exon11,078,79011,078,9301410
Exon11,080,48611,080,6561710
Exon11,082,18111,082,7115310
UTR1108271211,085,549