SYF2 - SYF2 pre-mRNA splicing factor

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 2 View list of all current human gene IDs
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Cross References
UniProt: O95926  HGNC Approved Gene Symbol: SYF2 
Previous Symbols: CBPIN Ensembl ENSG00000117614 
Synonyms : p29, DKFZp564O2082, NTC31, fSAP29 Previous Names: "CCNDBP1 interactor", "SYF2 homolog, RNA splicing factor (S. cerevisiae)"
HgncId : HGNC:19824  Omim: 607090 
Refseq: NM_015484  GenBank: AF273089 
 
Genomic coordinates: Cytogenetic location: 1p36.11 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SYF2 Gene Structure

Chromosome: chr1
Genbank ID: NM_015484 Orientation: -
Length coding sequence : 729 nucleotides.
Regionstartendregion lengthphase at end
UTR
25,558,95925,559,013
Exon25,558,93525,558,958240
Exon25,558,59525,558,7021080
Exon25,555,48925,555,6141260
Exon25,554,60925,554,7261181
Exon25,553,93325,554,023912
Exon25,551,49325,551,591992
Exon25,549,75725,549,9221660
UTR
25,548,76725,549,756