SLIT2 - slit guidance ligand 2

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 4 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: O94813 HGNC Approved Gene Symbol: SLIT2 
Previous Symbols: SLIL3 Ensembl ENSG00000145147 
Synonyms : Slit-2 Previous Names: "slit (Drosophila) homolog 2", "slit homolog 2 (Drosophila)"
HgncId : HGNC:11086  Omim: 603746 
GenBank: AF055585 
 
Genomic coordinates: Cytogenetic location: 4p15.31 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SLIT2 Gene Structure

Chromosome: chr4
Genbank ID: NM_001289135 Orientation: +
Length coding sequence : 4575 nucleotides.
Regionstartendregion lengthphase at end
UTR20,253,52720,255,438
Exon20,255,43920,255,6171792
Exon20,258,29520,258,366722
Exon20,259,49120,259,562722
Exon20,270,43320,270,504722
Exon20,469,37520,469,446722
Exon20,482,33920,482,410722
Exon20,487,82320,487,894722
Exon20,490,44220,490,6171761
Exon20,493,38420,493,5221392
Exon20,512,11820,512,189722
Exon20,512,68920,512,760722
Exon20,521,00520,521,076722
Exon20,525,38320,525,5261442
Exon20,525,63720,525,8001641
Exon20,530,57220,530,7221512
Exon20,533,60720,533,681752
Exon20,535,19520,535,3381442
Exon20,541,06420,541,2071442
Exon20,543,07620,543,2421671
Exon20,544,11720,544,2491332
Exon20,547,65420,547,722692
Exon20,550,11120,550,182722
Exon20,550,68020,550,751722
Exon20,552,45020,552,521722
Exon20,555,42820,555,5911641
Exon20,568,88520,569,0091250
Exon20,569,14120,569,238982
Exon20,570,48820,570,6271401
Exon20,591,26720,591,360942
Exon20,597,32020,597,4571382
Exon20,598,03820,598,2782410
Exon20,599,88820,600,0181312
Exon20,611,63620,611,7901551
Exon20,618,53320,618,8212892
Exon20,619,06220,619,2732121
Exon20,620,39120,620,6322420
UTR20,620,63320,622,184