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RC3H1 - ring finger and CCCH-type domains 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 2 View list of all current human gene IDs
View protein features Protein Feature View
Cross References for ring finger and CCCH-type domains 1
UniProt: Q5TC82  HGNC Approved Gene Symbol: RC3H1 
Ensembl ENSG00000135870 
Synonyms : KIAA2025, roquin, RP5-1198E17.5, RNF198 Previous Names: "ring finger and CCCH-type zinc finger domains 1"
HgncId : HGNC:29434  Omim: 609424 
Refseq: NM_172071  GenBank: AK093501 
 
Genomic coordinates (GRCh37)
Cytogenetic location: 1q25.1  reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red,G: black, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

RC3H1 Gene Structure

Chromosome: chr1
Orientation: -
Length coding sequence : 3399 nucleotides.
Regionstartendregion lengthphase at end
UTR173,962,124173,962,210
Exon173,961,893173,962,1232310
Exon173,953,637173,953,7571211
Exon173,952,556173,952,7952401
Exon173,951,865173,952,0401760
Exon173,949,947173,950,1472010
Exon173,947,626173,947,7581331
Exon173,941,647173,941,7651190
Exon173,939,643173,939,7551132
Exon173,933,977173,934,2582822
Exon173,933,111173,933,3252151
Exon173,930,863173,931,2333710
Exon173,930,215173,930,3821680
Exon173,921,124173,921,2761530
Exon173,916,507173,916,7202141
Exon173,915,884173,915,974912
Exon173,915,614173,915,7461330
Exon173,912,580173,912,7531740
Exon173,910,403173,910,5181162
Exon173,907,859173,908,0091510
UTR173,900,222173,907,858