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LSM1 - LSM1, U6 small nuclear RNA associated

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 0 View list of all current human gene IDs
View protein features Protein Feature View
Cross References for LSM1, U6 small nuclear RNA associated
UniProt: O15116  HGNC Approved Gene Symbol: LSM1 
Ensembl ENSG00000175324 
Synonyms : CASM, YJL124C Previous Names: "LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)"
HgncId : HGNC:20472  Omim: 607281 
Refseq: NM_014462  GenBank: AF000177 
 
Genomic coordinates (GRCh37)
Cytogenetic location: 8p11.2  reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red,G: black, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

LSM1 Gene Structure

Chromosome: chr8
Orientation: -
Length coding sequence : 399 nucleotides.
Regionstartendregion lengthphase at end
UTR38,033,83938,034,248
Exon38,033,79338,033,838461
Exon38,029,48338,029,551691
Exon38,027,32038,027,4351160
Exon38,021,18838,021,3581710
UTR38,020,83938,021,187