ITGA4 - integrin subunit alpha 4

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

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Cross References
UniProt: P13612 HGNC Approved Gene Symbol: ITGA4 
Previous Symbols: CD49D Ensembl ENSG00000115232 
Synonyms : CD49d Previous Names: "integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)"
HgncId : HGNC:6140  Omim: 192975 
 
Genomic coordinates: Cytogenetic location: 2q31.3 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

ITGA4 Gene Structure

Chromosome: chr2
Genbank ID: NM_000885 Orientation: +
Length coding sequence : 3096 nucleotides.
Regionstartendregion lengthphase at end
UTR182,321,618182,322,381
Exon182,322,382182,322,5781972
Exon182,322,923182,323,0441221
Exon182,339,687182,339,7931070
Exon182,339,886182,340,0151301
Exon182,343,484182,343,551680
Exon182,344,864182,344,9931301
Exon182,346,325182,346,410860
Exon182,347,087182,347,149630
Exon182,347,241182,347,3781380
Exon182,350,608182,350,7191121
Exon182,358,052182,358,146950
Exon182,359,449182,359,539911
Exon182,360,098182,360,143462
Exon182,360,510182,360,6641551
Exon182,363,350182,363,5041550
Exon182,374,385182,374,5341500
Exon182,376,426182,376,502772
Exon182,386,918182,387,0681510
Exon182,388,164182,388,259960
Exon182,388,898182,388,977802
Exon182,389,929182,390,018902
Exon182,392,024182,392,114910
Exon182,394,268182,394,3751080
Exon182,395,251182,395,3761260
Exon182,396,384182,396,5031200
Exon182,398,999182,399,097990
Exon182,399,543182,399,6621200
Exon182,400,159182,400,254960
UTR182,400,255182,403,655