HPS1 - HPS1, biogenesis of lysosomal organelles complex 3 subunit 1

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: no matching PDB entities View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: Q92902 HGNC Approved Gene Symbol: HPS1 
Previous Symbols: HPS Ensembl ENSG00000107521 
Synonyms : BLOC3S1 Previous Names: "Hermansky-Pudlak syndrome", "Hermansky-Pudlak syndrome 1"
HgncId : HGNC:5163  Omim: 604982 
Refseq: NM_000195, NM_182637, NM_182638, NM_182639  GenBank: U79136 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

HPS1 Gene Structure

Chromosome: chr10
Genbank ID: NM_000195 Orientation: -
Length coding sequence : 2100 nucleotides.
Regionstartendregion lengthphase at end
UTR100,206,563100,206,720
UTR100,205,056100,205,161
UTR
100,202,998100,202,997
Exon100,202,881100,202,9971170
Exon100,195,392100,195,5291380
Exon100,195,029100,195,1711432
Exon100,193,740100,193,8481090
Exon100,190,888100,191,0481612
Exon100,190,328100,190,4271000
Exon100,189,548100,189,646990
Exon100,189,330100,189,399701
Exon100,186,972100,187,021500
Exon100,185,575100,185,7421680
Exon100,185,298100,185,4771800
Exon100,184,070100,184,131622
Exon100,183,510100,183,6441352
Exon100,183,360100,183,425662
Exon100,182,126100,182,2701450
Exon100,179,802100,179,9151140
Exon100,177,932100,178,014832
Exon100,177,321100,177,4831630
UTR
100,175,955100,177,320