DDX58 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 58

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 18 View list of all current human gene IDs
View protein features Protein Feature View
Cross References for DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
UniProt: O95786  HGNC Approved Gene Symbol: DDX58 
Ensembl ENSG00000107201 
Synonyms : RIG-I, FLJ13599, DKFZp434J1111
HgncId : HGNC:19102  Omim: 609631 
Refseq: NM_014314  GenBank: AF038963 
 
Genomic coordinates (GRCh37)
Cytogenetic location: 9p12  reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red,G: black, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

DDX58 Gene Structure

Chromosome: chr9
Orientation: -
Length coding sequence : 2775 nucleotides.
Regionstartendregion lengthphase at end
UTR32,526,16532,526,322
Exon32,526,05932,526,1641061
Exon32,500,80332,500,9371351
Exon32,493,75932,493,9401820
Exon32,492,38932,492,5361481
Exon32,491,29932,491,4181201
Exon32,489,34232,489,4491081
Exon32,488,73232,488,8851542
Exon32,487,94332,488,2012590
Exon32,487,46932,487,6311631
Exon32,485,17332,485,2771051
Exon32,481,33832,481,4951580
Exon32,480,21732,480,3521361
Exon32,476,98132,477,1291490
Exon32,472,97332,473,063911
Exon32,467,76032,467,9301711
Exon32,466,28832,466,4391520
Exon32,459,36932,459,5121440
Exon32,457,12032,457,4162970
UTR32,455,30032,457,119