CXCL12 - C-X-C motif chemokine ligand 12

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 20 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P48061  HGNC Approved Gene Symbol: CXCL12 
Previous Symbols: SDF1A, SDF1B, SDF1 Ensembl ENSG00000107562 
Synonyms : SCYB12, SDF-1a, SDF-1b, PBSF, TLSF-a, TLSF-b, TPAR1 Previous Names: "stromal cell-derived factor 1", "chemokine (C-X-C motif) ligand 12"
HgncId : HGNC:10672  Omim: 600835 
Refseq: NM_000609  GenBank: L36033 
 
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

CXCL12 Gene Structure

Chromosome: chr10
Genbank ID: NM_000609 Orientation: -
Length coding sequence : 279 nucleotides.
Regionstartendregion lengthphase at end
UTR
44,880,45444,880,545
Exon44,880,39344,880,453611
Exon44,876,21144,876,3281182
Exon44,874,08544,874,171872
Exon44,868,77644,868,791160
UTR
44,865,60144,868,775