COL18A1 - collagen type XVIII alpha 1 chain

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 3 View list of all current human gene IDs
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Cross References
UniProt: P39060 HGNC Approved Gene Symbol: COL18A1 
Previous Symbols: KNO Ensembl ENSG00000182871 
Synonyms : KS, KNO1 Previous Names: "Knobloch syndrome, type 1", "collagen, type XVIII, alpha 1"
HgncId : HGNC:2195  Omim: 120328 
 
Genomic coordinates: Cytogenetic location: 21q22.3 reset view
Currently highlighted: Genomic position: chr21:46,888,156 View in genomic position mapping tool
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

COL18A1 Gene Structure

Chromosome: chr21
Genbank ID: NM_030582 Orientation: +
Length coding sequence : 4548 nucleotides.
Regionstartendregion lengthphase at end
UTR46,875,42346,875,444
Exon46,875,44546,876,0906461
Exon46,888,15646,888,7005450
Exon46,893,80946,893,895870
Exon46,895,39046,895,449600
Exon46,896,26546,896,3941301
Exon46,897,32546,897,401770
Exon46,897,66446,897,8792160
Exon46,898,24146,898,267270
Exon46,899,81646,899,878630
Exon46,899,98446,900,070870
Exon46,900,38146,900,434540
Exon46,900,61446,900,7721590
Exon46,901,87746,901,939630
Exon46,902,70946,902,735270
Exon46,906,77546,906,9061320
Exon46,907,36146,907,423630
Exon46,908,33246,908,358270
Exon46,909,40046,909,435360
Exon46,910,18946,910,260720
Exon46,910,75046,910,785360
Exon46,911,13946,911,228900
Exon46,912,44946,912,478300
Exon46,912,60146,912,627270
Exon46,913,07746,913,139630
Exon46,913,41546,913,489750
Exon46,914,45946,914,485270
Exon46,914,77646,914,829540
Exon46,915,27246,915,346750
Exon46,916,41446,916,482690
Exon46,916,96446,917,006431
Exon46,917,51346,917,575631
Exon46,923,92546,923,968440
Exon46,924,33046,924,426971
Exon46,924,43646,924,470350
Exon46,925,04846,925,1921451
Exon46,925,27246,925,345740
Exon46,925,75246,925,8801290
Exon46,927,47546,927,507330
Exon46,929,27046,929,5152460
Exon46,929,97846,930,1751980
Exon46,931,02546,931,1401162
Exon46,932,10246,932,3122110
UTR46,932,31346,933,634