CDC40 - cell division cycle 40

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 2 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: O60508  HGNC Approved Gene Symbol: CDC40 
Ensembl ENSG00000168438 
Synonyms : PRP17, EHB3, PRPF17, FLJ10564 Previous Names: "cell division cycle 40 homolog (yeast)", "cell division cycle 40 homolog (S. cerevisiae)"
HgncId : HGNC:17350  Omim: 605585 
Refseq: NM_015891  GenBank: AF015044 
 
Genomic coordinates: Cytogenetic location: 6q21 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

CDC40 Gene Structure

Chromosome: chr6
Genbank ID: NM_015891 Orientation: +
Length coding sequence : 1737 nucleotides.
Regionstartendregion lengthphase at end
UTR110,501,623110,501,647
Exon110,501,648110,501,8361890
Exon110,514,385110,514,471870
Exon110,522,761110,522,8901301
Exon110,528,709110,528,792841
Exon110,530,287110,530,4261400
Exon110,531,910110,532,006971
Exon110,533,336110,533,4751400
Exon110,534,289110,534,363750
Exon110,536,489110,536,534461
Exon110,538,905110,539,0061021
Exon110,540,567110,540,6821160
Exon110,540,939110,541,0721342
Exon110,547,370110,547,446771
Exon110,550,035110,550,1791452
Exon110,551,157110,551,3341780
UTR110,551,335110,553,422