BRCA1 - BRCA1, DNA repair associated

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: 27 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P38398  HGNC Approved Gene Symbol: BRCA1 
Ensembl ENSG00000012048 
Synonyms : RNF53, BRCC1, PPP1R53, FANCS Previous Names: "breast cancer 1, early onset", "breast cancer 1"
HgncId : HGNC:1100  Omim: 113705 
Refseq: NM_007294  GenBank: U14680 
 
Fullscreen
Dalliance goes here...

This feature requires an up-to-date web browser.

Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

BRCA1 Gene Structure

Chromosome: chr17
Genbank ID: NM_007294 Orientation: -
Length coding sequence : 5589 nucleotides.
Regionstartendregion lengthphase at end
UTR41,277,28741,277,500
UTR
41,276,11441,276,132
Exon41,276,03441,276,113802
Exon41,267,74341,267,796542
Exon41,258,47341,258,550782
Exon41,256,88541,256,973891
Exon41,256,13941,256,2781400
Exon41,251,79241,251,8971061
Exon41,249,26141,249,306462
Exon41,247,86341,247,939771
Exon41,243,45241,246,87734261
Exon41,242,96141,243,049890
Exon41,234,42141,234,5921721
Exon41,228,50541,228,6311272
Exon41,226,34841,226,5381911
Exon41,222,94541,223,2553110
Exon41,219,62541,219,712881
Exon41,215,89141,215,968781
Exon41,215,35041,215,390410
Exon41,209,06941,209,152840
Exon41,203,08041,203,134551
Exon41,201,13841,201,211740
Exon41,199,66041,199,720611
Exon41,197,69541,197,8191250
UTR
41,196,31241,197,694