ATP2A1 - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

 

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The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Number of PDB entities (unique chains) for this gene: no matching PDB entities View list of all current human gene IDs
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Cross References
UniProt: O14983  HGNC Approved Gene Symbol: ATP2A1 
Previous Symbols: ATP2A Ensembl ENSG00000196296 
Synonyms : SERCA1 Previous Names: "ATPase, Ca++ transporting, cardiac muscle, fast twitch 1"
HgncId : HGNC:811  Omim: 108730 
Refseq: NM_004320 
 
Genomic coordinates: Cytogenetic location: 16p11.2 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

ATP2A1 Gene Structure

Chromosome: chr16
Genbank ID: NM_004320 Orientation: +
Length coding sequence : 2982 nucleotides.
Regionstartendregion lengthphase at end
UTR28,889,80828,889,992
Exon28,889,99328,890,1101181
Exon28,890,42028,890,437181
Exon28,890,82228,890,904830
Exon28,892,23628,892,3401050
Exon28,893,77228,893,9101391
Exon28,895,89628,895,976811
Exon28,898,51028,898,595860
Exon28,898,74628,899,0432981
Exon28,900,10828,900,2741670
Exon28,905,47628,905,564892
Exon28,905,82628,905,9281030
Exon28,906,14328,906,2741320
Exon28,909,32128,909,4461260
Exon28,909,55428,909,7722190
Exon28,911,90228,912,2373360
Exon28,913,18428,913,4042212
Exon28,913,50528,913,7072031
Exon28,913,90128,913,986860
Exon28,914,09928,914,2321342
Exon28,914,35128,914,4681180
Exon28,914,64428,914,7611181
Exon28,915,02128,915,02550
UTR28,915,02628,915,062