0.008347
0.004819
0.000000
0.000000
0.009639
0.000000
0.000000
0.000000
0.002911
0.00000
0.00000
0.00000
Ritacco, C.J.
Wang, J.
Steitz, T.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
119.800
119.800
343.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
S
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
S
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
R
C
N
449
N
O
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
N
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
N
499
N
O
N
500
N
O
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
N
N
513
S
C
N
514
N
C
N
515
N
O
N
516
N
C
N
517
N
C
N
518
N
C
N
519
N
O
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
Y
469
N
sing
Y
470
N
sing
N
471
N
sing
Y
472
N
sing
Y
473
N
doub
N
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
Y
492
N
doub
Y
493
N
sing
Y
494
N
sing
N
495
N
sing
Y
496
N
doub
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
doub
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
70
685
693
10.1107/S1399004713032392
24598738
Exploiting large non-isomorphous differences for phase determination of a G-segment invertase-DNA complex.
2014
10.2210/pdb4m6f/pdb
pdb_00004m6f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
100
1
CCD
2012-07-22
ADSC QUANTUM 315r
PIXEL
2012-12-04
DECTRIS PILATUS 6M
PIXEL
2011-08-22
DECTRIS PILATUS 6M
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.0849
1.0
1.14019
1.0
24-ID-E
APS
1.0849
SYNCHROTRON
APS BEAMLINE 24-ID-E
X29A
NSLS
1.0849
SYNCHROTRON
NSLS BEAMLINE X29A
X29A
NSLS
1.14019
SYNCHROTRON
NSLS BEAMLINE X29A
21714.197
DNA-invertase
1
nat
polymer
5246.429
gix site analog
1
syn
polymer
5475.620
gix site analog
1
syn
polymer
no
no
MLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTRTDRPGLKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGEL
RERGINFRSLTDSIDTSSPMGRFFFHVMGALAEVERELIIERTMAGLAAARNKGRIGGRPPKLTKAEQEQAGRLLAQGIP
RKQVALIYDVALSTLYKKHPAKRAHIENDDRIN
MLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTRTDRPGLKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGEL
RERGINFRSLTDSIDTSSPMGRFFFHVMGALAEVERELIIERTMAGLAAARNKGRIGGRPPKLTKAEQEQAGRLLAQGIP
RKQVALIYDVALSTLYKKHPAKRAHIENDDRIN
A
polypeptide(L)
no
no
(DA)(DA)(DG)(DT)(DT)(DT)(DT)(DT)(DG)(DA)(DT)(DA)(DA)(DG)(DT)(DT)(DT)
AAGTTTTTGATAAGTTT
B
polydeoxyribonucleotide
no
no
(DA)(DA)(DA)(DA)(DC)(DT)(DT)(DA)(DT)(DC)(DA)(DA)(DA)(DA)(DA)(DC)(DT)(DT)
AAAACTTATCAAAAACTT
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
10677
Enterobacteria phage Mu
3
VAPOR DIFFUSION, HANGING DROP
6.5
3-5% Ammonium Sulfate
20% ethylene glycol
100 mM MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
-26.696
1
20
B
2
C
30
1.248
B_DA2:DT30_C
1
-15.251
-0.743
-0.516
-0.475
20.279
B
3
C
29
29.678
B_DG3:DC29_C
2
-3.955
-4.250
2.248
-1.416
33.115
1
20
B
4
C
28
-21.192
B_DT4:DA28_C
3
44.829
-1.216
-0.708
-0.467
18.131
1
20
B
8
C
25
12.610
B_DT8:DA25_C
4
-28.659
0.794
-0.388
-0.288
-27.656
1
B
9
C
23
27.458
B_DG9:DC23_C
5
-52.184
0.602
1.304
0.925
-51.419
B
14
C
19
20.681
B_DG14:DT19_C
6
-9.317
-3.491
-1.005
0.237
-19.361
B
16
C
17
-4.358
B_DT16:DA17_C
7
-2.178
3.361
1.227
-0.785
-1.674
32.694
B
B
2
3
13.394
C
C
30
29
1.791
5.281
1.496
-2.901
BB_DA2DG3:DC29DT30_CC
1
-31.942
81.015
4.608
-5.184
-2.836
2.839
64.909
B
B
3
4
-47.152
C
C
29
28
5.254
-45.314
-1.246
0.478
BB_DG3DT4:DA28DC29_CC
2
21.636
-22.513
42.546
3.437
2.589
4.693
70.308
B
B
8
9
41.306
C
C
25
23
5.526
44.083
1.309
1.305
BB_DT8DG9:DC23DA25_CC
3
-19.436
18.212
52.828
-1.775
-2.419
pdbx_entity_src_syn
reflns
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Database references
Data collection
Database references
Source and taxonomy
Data collection
Database references
1
0
2014-03-12
1
1
2014-04-02
1
2
2020-01-29
1
3
2024-02-28
_pdbx_entity_src_syn.details
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.organism_scientific
_reflns.pdbx_Rmerge_I_obs
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2013-08-09
REL
REL
32630
synthetic construct
sample
32630
synthetic construct
sample
n
1
1
A
LEU
2
n
2
LEU
2
A
ILE
3
n
3
ILE
3
A
GLY
4
n
4
GLY
4
A
TYR
5
n
5
TYR
5
A
VAL
6
n
6
VAL
6
A
ARG
7
n
7
ARG
7
A
VAL
8
n
8
VAL
8
A
ALA
9
n
9
SER
9
A
THR
10
n
10
THR
10
A
ASN
11
n
11
ASN
11
A
ASP
12
n
12
ASP
12
A
GLN
13
n
13
GLN
13
A
ASN
14
n
14
ASN
14
A
THR
15
n
15
THR
15
A
ASP
16
n
16
ASP
16
A
LEU
17
n
17
LEU
17
A
GLN
18
n
18
GLN
18
A
ARG
19
n
19
ARG
19
A
ASN
20
n
20
ASN
20
A
ALA
21
n
21
ALA
21
A
LEU
22
n
22
LEU
22
A
VAL
23
n
23
VAL
23
A
CYS
24
n
24
CYS
24
A
ALA
25
n
25
ALA
25
A
GLY
26
n
26
GLY
26
A
CYS
27
n
27
CYS
27
A
GLU
28
n
28
GLU
28
A
GLN
29
n
29
GLN
29
A
ILE
30
n
30
ILE
30
A
PHE
31
n
31
PHE
31
A
GLU
32
n
32
GLU
32
A
ASP
33
n
33
ASP
33
A
LYS
34
n
34
LYS
34
A
LEU
35
n
35
LEU
35
A
SER
36
n
36
SER
36
A
GLY
37
n
37
GLY
37
A
THR
38
n
38
THR
38
A
ARG
39
n
39
ARG
39
A
THR
40
n
40
THR
40
A
ASP
41
n
41
ASP
41
A
ARG
42
n
42
ARG
42
A
PRO
43
n
43
PRO
43
A
GLY
44
n
44
GLY
44
A
LEU
45
n
45
LEU
45
A
LYS
46
n
46
LYS
46
A
ARG
47
n
47
ARG
47
A
ALA
48
n
48
ALA
48
A
LEU
49
n
49
LEU
49
A
LYS
50
n
50
LYS
50
A
ARG
51
n
51
ARG
51
A
LEU
52
n
52
LEU
52
A
GLN
53
n
53
GLN
53
A
LYS
54
n
54
LYS
54
A
GLY
55
n
55
GLY
55
A
ASP
56
n
56
ASP
56
A
THR
57
n
57
THR
57
A
LEU
58
n
58
LEU
58
A
VAL
59
n
59
VAL
59
A
VAL
60
n
60
VAL
60
A
TRP
61
n
61
TRP
61
A
LYS
62
n
62
LYS
62
A
LEU
63
n
63
LEU
63
A
ASP
64
n
64
ASP
64
A
ARG
65
n
65
ARG
65
A
LEU
66
n
66
LEU
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
SER
69
n
69
SER
69
A
MET
70
n
70
MET
70
A
LYS
71
n
71
LYS
71
A
HIS
72
n
72
HIS
72
A
LEU
73
n
73
LEU
73
A
ILE
74
n
74
ILE
74
A
SER
75
n
75
SER
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
GLU
79
n
79
GLU
79
A
LEU
80
n
80
LEU
80
A
ARG
81
n
81
ARG
81
A
GLU
82
n
82
GLU
82
A
ARG
83
n
83
ARG
83
A
GLY
84
n
84
GLY
84
A
ILE
85
n
85
ILE
85
A
ASN
86
n
86
ASN
86
A
PHE
87
n
87
PHE
87
A
ARG
88
n
88
ARG
88
A
SER
89
n
89
SER
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
ASP
92
n
92
ASP
92
A
SER
93
n
93
SER
93
A
ILE
94
n
94
ILE
94
A
ASP
95
n
95
ASP
95
A
THR
96
n
96
THR
96
A
SER
97
n
97
SER
97
A
SER
98
n
98
SER
98
A
PRO
99
n
99
PRO
99
A
MET
100
n
100
MET
100
A
GLY
101
n
101
GLY
101
A
ARG
102
n
102
ARG
102
A
PHE
103
n
103
PHE
103
A
PHE
104
n
104
PHE
104
A
PHE
105
n
105
PHE
105
A
HIS
106
n
106
HIS
106
A
VAL
107
n
107
VAL
107
A
MET
108
n
108
MET
108
A
GLY
109
n
109
GLY
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
ALA
112
n
112
ALA
112
A
GLU
113
n
113
GLU
113
A
VAL
114
n
114
VAL
114
A
GLU
115
n
115
GLU
115
A
ARG
116
n
116
ARG
116
A
GLU
117
n
117
GLU
117
A
LEU
118
n
118
LEU
118
A
ILE
119
n
119
ILE
119
A
ILE
120
n
120
ILE
120
A
GLU
121
n
121
GLU
121
A
ARG
122
n
122
ARG
122
A
THR
123
n
123
THR
123
A
MET
124
n
124
MET
124
A
ALA
125
n
125
ALA
125
A
GLY
126
n
126
GLY
126
A
LEU
127
n
127
LEU
127
A
ALA
128
n
128
ALA
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
ARG
131
n
131
ARG
131
A
ASN
132
n
132
ASN
132
A
LYS
133
n
133
LYS
133
A
GLY
134
n
134
GLY
134
A
ARG
135
n
135
ARG
135
A
ILE
136
n
136
ILE
136
A
GLY
137
n
137
GLY
137
A
GLY
138
n
138
GLY
138
A
ARG
139
n
139
ARG
139
A
PRO
140
n
140
PRO
140
A
PRO
141
n
141
PRO
141
A
LYS
142
n
142
LYS
142
A
LEU
143
n
143
LEU
143
A
THR
144
n
144
THR
144
A
LYS
145
n
145
LYS
145
A
ALA
146
n
146
ALA
146
A
GLU
147
n
147
GLU
147
A
GLN
148
n
148
GLN
148
A
GLU
149
n
149
GLU
149
A
GLN
150
n
150
GLN
150
A
ALA
151
n
151
ALA
151
A
GLY
152
n
152
GLY
152
A
ARG
153
n
153
ARG
153
A
LEU
154
n
154
LEU
154
A
LEU
155
n
155
LEU
155
A
ALA
156
n
156
ALA
156
A
GLN
157
n
157
GLN
157
A
GLY
158
n
158
GLY
158
A
ILE
159
n
159
ILE
159
A
PRO
160
n
160
PRO
160
A
ARG
161
n
161
ARG
161
A
LYS
162
n
162
LYS
162
A
GLN
163
n
163
GLN
163
A
VAL
164
n
164
VAL
164
A
ALA
165
n
165
ALA
165
A
LEU
166
n
166
LEU
166
A
ILE
167
n
167
ILE
167
A
TYR
168
n
168
TYR
168
A
ASP
169
n
169
ASP
169
A
VAL
170
n
170
VAL
170
A
ALA
171
n
171
ALA
171
A
LEU
172
n
172
LEU
172
A
SER
173
n
173
SER
173
A
THR
174
n
174
THR
174
A
LEU
175
n
175
LEU
175
A
TYR
176
n
176
TYR
176
A
LYS
177
n
177
LYS
177
A
LYS
178
n
178
LYS
178
A
HIS
179
n
179
HIS
179
A
PRO
180
n
180
PRO
180
A
ALA
181
n
181
ALA
181
A
LYS
182
n
182
LYS
182
A
ARG
183
n
183
ARG
183
A
ALA
184
n
184
ALA
184
A
HIS
185
n
185
HIS
185
A
ILE
186
n
186
ILE
186
A
GLU
187
n
187
GLU
187
A
ASN
188
n
188
ASN
188
A
ASP
189
n
189
ASP
189
A
n
190
190
A
n
191
191
A
n
192
192
A
n
193
193
A
DA
1
n
1
DA
1
B
DA
2
n
2
DA
2
B
DG
3
n
3
DG
3
B
DT
4
n
4
DT
4
B
DT
5
n
5
DT
5
B
DT
6
n
6
DT
6
B
DT
7
n
7
DT
7
B
DT
8
n
8
DT
8
B
DG
9
n
9
DG
9
B
DA
10
n
10
DA
10
B
DT
11
n
11
DT
11
B
DA
12
n
12
DA
12
B
DA
13
n
13
DA
13
B
DG
14
n
14
DG
14
B
DT
15
n
15
DT
15
B
DT
16
n
16
DT
16
B
DT
17
n
17
DT
17
B
DA
14
n
1
DA
14
C
DA
15
n
2
DA
15
C
DA
16
n
3
DA
16
C
DA
17
n
4
DA
17
C
DC
18
n
5
DC
18
C
DT
19
n
6
DT
19
C
DT
20
n
7
DT
20
C
DA
21
n
8
DA
21
C
DT
22
n
9
DT
22
C
DC
23
n
10
DC
23
C
DA
24
n
11
DA
24
C
DA
25
n
12
DA
25
C
DA
26
n
13
DA
26
C
DA
27
n
14
DA
27
C
DA
28
n
15
DA
28
C
DC
29
n
16
DC
29
C
DT
30
n
17
DT
30
C
DT
31
n
18
DT
31
C
software_defined_assembly
PISA
3
trimeric
6010
-36
18010
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
OG
SER
9
A
OG
SER
9
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ASP
190
A
ASP
190
1
Y
1
A
ARG
191
A
ARG
191
1
Y
1
A
ILE
192
A
ILE
192
1
Y
1
A
ASN
193
A
ASN
193
1
Y
1
B
B
P
OP3
DA
DA
1
1
-0.087
0.012
1.607
1.520
N
1
C
C
P
OP3
DA
DA
14
14
-0.087
0.012
1.607
1.520
N
1
B
B
O2
O2
DT
DT
17
17
2.19
1_555
4_775
1
A
ILE
3
-92.13
-159.89
1
A
SER
9
-96.44
-61.00
1
A
THR
10
-177.58
-31.77
1
A
ARG
19
-64.53
-97.54
1
A
ASN
20
-60.73
10.10
1
A
ALA
25
-66.15
6.75
1
A
CYS
27
-77.13
-129.76
1
A
GLU
28
-174.02
-24.83
1
A
SER
36
-29.70
-42.21
1
A
ARG
39
-62.15
20.69
1
A
ASP
41
-152.99
75.65
1
A
ARG
42
14.42
69.69
1
A
PRO
43
-56.90
7.17
1
A
LYS
50
-74.72
-74.03
1
A
ARG
51
-73.97
35.23
1
A
LYS
54
-48.46
-12.89
1
A
VAL
60
-177.04
147.21
1
A
ASP
64
-68.26
-102.62
1
A
ARG
68
-39.59
100.88
1
A
MET
70
41.32
-171.12
1
A
ARG
83
-94.24
-123.89
1
A
ASN
86
-159.98
-93.78
1
A
PHE
87
165.26
174.64
1
A
ARG
88
158.62
56.39
1
A
SER
93
-60.79
27.79
1
A
ILE
94
-30.25
122.53
1
A
THR
96
-152.28
-128.73
1
A
SER
97
68.22
-114.85
1
A
PRO
99
-46.28
-17.61
1
A
ARG
102
-38.43
-78.44
1
A
ALA
112
-56.47
-7.54
1
A
ARG
116
-147.43
-5.29
1
A
ARG
131
-61.22
-90.73
1
A
ASN
132
40.91
-95.40
1
A
ARG
135
67.92
111.25
1
A
ARG
139
-34.37
118.14
1
A
ARG
153
-149.53
14.90
1
A
LEU
154
-73.48
-70.95
1
A
LEU
155
-76.42
31.98
1
A
PRO
160
-66.58
-134.81
1
A
ARG
161
-133.00
-54.03
1
A
LYS
162
-74.35
25.46
1
A
GLN
163
-142.74
-26.33
1
A
LEU
166
-155.27
-51.67
1
A
ASP
169
62.04
62.66
1
A
VAL
170
-71.86
-95.39
1
A
SER
173
-167.57
-28.89
1
A
THR
174
-64.00
-94.21
1
A
LEU
175
23.35
-83.88
1
A
LYS
177
-144.99
28.50
1
A
LYS
178
-131.00
-151.39
1
A
ALA
181
-131.46
-80.08
1
A
ARG
183
-26.45
157.97
1
A
ALA
184
85.32
145.72
1
A
ILE
186
93.41
122.91
1
A
ASN
188
151.97
128.04
335
16.3
16.3
-32.6
0.288
0.229
0.23
4.99
30
685
6853
random
1,2,3
1.0
SAD
DEN
4.99
30
0
2196
0
720
1476
4.99
30
4M6F
1.0
1.0
0.111
12.05
1,2,3
12.5
94.5
4.97
5.25
1,2,3
94.6
data collection
CBASS
phasing
SHELXS
refinement
CNS
1.1
data reduction
XDS
data scaling
XDS
Dimer of the G-Segment Invertase bound to a DNA substrate
1
N
N
2
N
N
3
N
N
A
ARG
19
A
ARG
19
HELX_P
A
VAL
23
A
VAL
23
5
1
5
A
LYS
46
A
LYS
46
HELX_P
A
LYS
50
A
LYS
50
5
2
5
A
LYS
71
A
LYS
71
HELX_P
A
LEU
76
A
LEU
76
1
3
6
A
VAL
77
A
VAL
77
HELX_P
A
LEU
80
A
LEU
80
5
4
4
A
GLY
101
A
GLY
101
HELX_P
A
PHE
105
A
PHE
105
5
5
5
A
GLU
113
A
GLU
113
HELX_P
A
LEU
118
A
LEU
118
1
6
6
A
LEU
118
A
LEU
118
HELX_P
A
ASN
132
A
ASN
132
1
7
15
A
THR
144
A
THR
144
HELX_P
A
GLU
149
A
GLU
149
1
8
6
A
GLN
150
A
GLN
150
HELX_P
A
ARG
153
A
ARG
153
5
9
4
hydrog
WATSON-CRICK
B
DA
2
B
N1
DA
2
1_555
C
DT
30
C
N3
DT
17
1_555
hydrog
WATSON-CRICK
B
DA
2
B
N6
DA
2
1_555
C
DT
30
C
O4
DT
17
1_555
hydrog
DG-DC PAIR
B
DG
3
B
N1
DG
3
1_555
C
DC
29
C
O2
DC
16
1_555
hydrog
WATSON-CRICK
B
DT
4
B
N3
DT
4
1_555
C
DA
28
C
N1
DA
15
1_555
hydrog
WATSON-CRICK
B
DT
4
B
O4
DT
4
1_555
C
DA
28
C
N6
DA
15
1_555
hydrog
WATSON-CRICK
B
DT
8
B
N3
DT
8
1_555
C
DA
25
C
N1
DA
12
1_555
hydrog
WATSON-CRICK
B
DT
8
B
O4
DT
8
1_555
C
DA
25
C
N6
DA
12
1_555
hydrog
TYPE_10_PAIR
B
DG
9
B
N2
DG
9
1_555
B
DA
10
B
N1
DA
10
1_555
hydrog
TYPE_10_PAIR
B
DG
9
B
N3
DG
9
1_555
B
DA
10
B
N6
DA
10
1_555
hydrog
DG-DC PAIR
B
DG
9
B
N2
DG
9
1_555
C
DC
23
C
O2
DC
10
1_555
hydrog
DG-DT MISPAIR
B
DG
14
B
N1
DG
14
1_555
C
DT
19
C
O2
DT
6
1_555
hydrog
DT-DA PAIR
B
DT
16
B
O2
DT
16
1_555
C
DA
15
C
N6
DA
2
1_555
hydrog
DT-DA PAIR
B
DT
16
B
O2
DT
16
1_555
C
DA
17
C
N6
DA
4
1_555
HYDROLASE/DNA
Helix-turn-helix, catalytic domain, DNA Binding Domain, recombinase, HYDROLASE-DNA complex
DNIV_BPMU
UNP
1
1
P03015
MLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTRTDRPGLKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGEL
RERGINFRSLTDSIDTSSPMGRFFFHVMGALAEMERELIIERTMAGLAAARNKGRIGGRPPKLTKAEWEQAGRLLAQGIP
RKQVALIYDVALSTLYKKHPAKRAHIENDDRIN
4M6F
PDB
2
4M6F
AAGTTTTTGATAAGTTT
4M6F
PDB
3
4M6F
AAAACTTATCAAAAACTT
1
193
4M6F
1
193
P03015
A
1
1
193
1
17
4M6F
1
17
4M6F
B
2
1
17
14
31
4M6F
14
31
4M6F
C
3
1
18
1
MET
conflict
VAL
114
4M6F
A
P03015
UNP
114
114
1
TRP
conflict
GLN
148
4M6F
A
P03015
UNP
148
148
181
P 64 2 2