0.008772
0.000000
0.000000
0.000000
0.008487
0.000000
0.000000
0.000000
0.009234
0.00000
0.00000
0.00000
Pernot, L.
Novakovic, I.
Westermaier, Y.
Perozzo, R.
Raic-Malic, S.
Scapozza, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
114.001
117.827
108.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C9 H12 N2 O4
212.203
6-[3-hydroxy-2-(hydroxymethyl)prop-1-en-1-yl]-5-methylpyrimidine-2,4(1H,3H)-dione
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
N
O
N
163
N
O
N
164
N
N
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
S
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
N
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
S
N
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
C
N
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
O
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
S
N
332
N
O
N
333
N
O
N
334
N
O
N
335
N
O
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
R
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
N
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
O
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
N
409
N
C
N
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
Y
275
N
doub
Y
276
N
sing
Y
277
N
sing
N
278
N
sing
Y
279
N
doub
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
Y
348
N
doub
Y
349
N
sing
Y
350
N
sing
N
351
N
sing
Y
352
N
doub
Y
353
N
sing
Y
354
N
sing
N
355
N
sing
Y
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
Y
376
N
doub
Y
377
N
sing
Y
378
N
sing
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
To be Published
0353
New thymine derivatives as HSV1-TK ligand for the development of PET imaging tracer
US
Nucleosides Nucleotides Nucleic Acids
1525-7770
30
293
315
10.1080/15257770.2011.581258
21623543
Synthesis, crystal structure, and in vitro biological evaluation of C-6 pyrimidine derivatives: new lead structures for monitoring gene expression in vivo.
2011
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
21
6161
6165
10.1016/j.bmcl.2011.07.115
21911293
A new N-methyl thymine derivative comprising a dihydroxyisobutenyl unit as ligand for thymidine kinase of herpes simplex virus type 1 (HSV-1 TK).
2011
10.2210/pdb4ivp/pdb
pdb_00004ivp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
2012-02-11
DECTRIS PILATUS 2M-F
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
X06DA
SLS
1.0
SYNCHROTRON
SLS BEAMLINE X06DA
35779.086
Thymidine kinase
2.7.1.21
UNP residues 46-376
2
man
polymer
212.203
6-[3-hydroxy-2-(hydroxymethyl)prop-1-en-1-yl]-5-methylpyrimidine-2,4(1H,3H)-dione
2
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
18.015
water
218
nat
water
HSV1-TK
no
no
MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQ
ITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL
GALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRPHIG
DTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLA
RTFAREMGEAN
MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQ
ITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL
GALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRPHIG
DTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLA
RTFAREMGEAN
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HHV-1
17
sample
TK, TK (UL23), UL23
10299
Human herpesvirus 1
511693
Escherichia coli
BL21
plasmid
pGEX-6P-2
1
2.54
51.60
VAPOR DIFFUSION, SITTING DROP
7.5
0.9-1.2 M lithium sulfate, 1 mM DTT, 0.1 M HEPES, pH 7.5-8.0, VAPOR DIFFUSION, SITTING DROP, temperature 296K
296
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Experimental preparation
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-02-06
1
1
2013-10-02
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of thymidine kinase from Herpes simplex virus type 1 in complex with N-methyl-DHBT
Crystal structure of thymidine kinase from Herpes simplex virus type 1 in complex with N-methyl-FHBT
Crystal structure of thymidine kinase from Herpes simplex virus type 1 in complex with DHBT
Crystal structure of thymidine kinase from Herpes simplex virus type 1 in complex with IN43/5
Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with IN52/10
RCSB
Y
RCSB
2013-01-23
REL
REL
I51
6-[3-hydroxy-2-(hydroxymethyl)prop-1-en-1-yl]-5-methylpyrimidine-2,4(1H,3H)-dione
SO4
SULFATE ION
HOH
water
3F0T
PDB ENTRY 3F0T
PDB
experimental model
I51
401
2
I51
I51
401
A
SO4
501
3
SO4
SO4
402
A
SO4
502
3
SO4
SO4
403
A
I51
401
2
I51
I51
401
B
SO4
402
3
SO4
SO4
402
B
SO4
504
3
SO4
SO4
403
B
HOH
3
4
HOH
HOH
501
A
HOH
5
4
HOH
HOH
502
A
HOH
6
4
HOH
HOH
503
A
HOH
10
4
HOH
HOH
504
A
HOH
12
4
HOH
HOH
505
A
HOH
14
4
HOH
HOH
506
A
HOH
15
4
HOH
HOH
507
A
HOH
17
4
HOH
HOH
508
A
HOH
19
4
HOH
HOH
509
A
HOH
21
4
HOH
HOH
510
A
HOH
23
4
HOH
HOH
511
A
HOH
24
4
HOH
HOH
512
A
HOH
26
4
HOH
HOH
513
A
HOH
27
4
HOH
HOH
514
A
HOH
28
4
HOH
HOH
515
A
HOH
30
4
HOH
HOH
516
A
HOH
35
4
HOH
HOH
517
A
HOH
37
4
HOH
HOH
518
A
HOH
38
4
HOH
HOH
519
A
HOH
45
4
HOH
HOH
520
A
HOH
48
4
HOH
HOH
521
A
HOH
50
4
HOH
HOH
522
A
HOH
52
4
HOH
HOH
523
A
HOH
53
4
HOH
HOH
524
A
HOH
54
4
HOH
HOH
525
A
HOH
55
4
HOH
HOH
526
A
HOH
59
4
HOH
HOH
527
A
HOH
60
4
HOH
HOH
528
A
HOH
61
4
HOH
HOH
529
A
HOH
62
4
HOH
HOH
530
A
HOH
63
4
HOH
HOH
531
A
HOH
64
4
HOH
HOH
532
A
HOH
67
4
HOH
HOH
533
A
HOH
68
4
HOH
HOH
534
A
HOH
73
4
HOH
HOH
535
A
HOH
74
4
HOH
HOH
536
A
HOH
75
4
HOH
HOH
537
A
HOH
77
4
HOH
HOH
538
A
HOH
78
4
HOH
HOH
539
A
HOH
79
4
HOH
HOH
540
A
HOH
82
4
HOH
HOH
541
A
HOH
84
4
HOH
HOH
542
A
HOH
86
4
HOH
HOH
543
A
HOH
87
4
HOH
HOH
544
A
HOH
88
4
HOH
HOH
545
A
HOH
90
4
HOH
HOH
546
A
HOH
92
4
HOH
HOH
547
A
HOH
97
4
HOH
HOH
548
A
HOH
103
4
HOH
HOH
549
A
HOH
104
4
HOH
HOH
550
A
HOH
105
4
HOH
HOH
551
A
HOH
111
4
HOH
HOH
552
A
HOH
112
4
HOH
HOH
553
A
HOH
113
4
HOH
HOH
554
A
HOH
114
4
HOH
HOH
555
A
HOH
115
4
HOH
HOH
556
A
HOH
118
4
HOH
HOH
557
A
HOH
119
4
HOH
HOH
558
A
HOH
120
4
HOH
HOH
559
A
HOH
121
4
HOH
HOH
560
A
HOH
123
4
HOH
HOH
561
A
HOH
125
4
HOH
HOH
562
A
HOH
129
4
HOH
HOH
563
A
HOH
131
4
HOH
HOH
564
A
HOH
134
4
HOH
HOH
565
A
HOH
138
4
HOH
HOH
566
A
HOH
139
4
HOH
HOH
567
A
HOH
143
4
HOH
HOH
568
A
HOH
144
4
HOH
HOH
569
A
HOH
147
4
HOH
HOH
570
A
HOH
152
4
HOH
HOH
571
A
HOH
154
4
HOH
HOH
572
A
HOH
160
4
HOH
HOH
573
A
HOH
163
4
HOH
HOH
574
A
HOH
165
4
HOH
HOH
575
A
HOH
166
4
HOH
HOH
576
A
HOH
169
4
HOH
HOH
577
A
HOH
171
4
HOH
HOH
578
A
HOH
173
4
HOH
HOH
579
A
HOH
177
4
HOH
HOH
580
A
HOH
178
4
HOH
HOH
581
A
HOH
179
4
HOH
HOH
582
A
HOH
180
4
HOH
HOH
583
A
HOH
181
4
HOH
HOH
584
A
HOH
182
4
HOH
HOH
585
A
HOH
184
4
HOH
HOH
586
A
HOH
185
4
HOH
HOH
587
A
HOH
186
4
HOH
HOH
588
A
HOH
187
4
HOH
HOH
589
A
HOH
189
4
HOH
HOH
590
A
HOH
190
4
HOH
HOH
591
A
HOH
192
4
HOH
HOH
592
A
HOH
193
4
HOH
HOH
593
A
HOH
194
4
HOH
HOH
594
A
HOH
195
4
HOH
HOH
595
A
HOH
196
4
HOH
HOH
596
A
HOH
197
4
HOH
HOH
597
A
HOH
198
4
HOH
HOH
598
A
HOH
200
4
HOH
HOH
599
A
HOH
201
4
HOH
HOH
600
A
HOH
202
4
HOH
HOH
601
A
HOH
219
4
HOH
HOH
602
A
HOH
220
4
HOH
HOH
603
A
HOH
1
4
HOH
HOH
501
B
HOH
2
4
HOH
HOH
502
B
HOH
4
4
HOH
HOH
503
B
HOH
7
4
HOH
HOH
504
B
HOH
8
4
HOH
HOH
505
B
HOH
9
4
HOH
HOH
506
B
HOH
11
4
HOH
HOH
507
B
HOH
13
4
HOH
HOH
508
B
HOH
16
4
HOH
HOH
509
B
HOH
18
4
HOH
HOH
510
B
HOH
20
4
HOH
HOH
511
B
HOH
22
4
HOH
HOH
512
B
HOH
25
4
HOH
HOH
513
B
HOH
29
4
HOH
HOH
514
B
HOH
31
4
HOH
HOH
515
B
HOH
32
4
HOH
HOH
516
B
HOH
33
4
HOH
HOH
517
B
HOH
34
4
HOH
HOH
518
B
HOH
36
4
HOH
HOH
519
B
HOH
39
4
HOH
HOH
520
B
HOH
40
4
HOH
HOH
521
B
HOH
41
4
HOH
HOH
522
B
HOH
42
4
HOH
HOH
523
B
HOH
43
4
HOH
HOH
524
B
HOH
44
4
HOH
HOH
525
B
HOH
46
4
HOH
HOH
526
B
HOH
47
4
HOH
HOH
527
B
HOH
49
4
HOH
HOH
528
B
HOH
51
4
HOH
HOH
529
B
HOH
56
4
HOH
HOH
530
B
HOH
57
4
HOH
HOH
531
B
HOH
58
4
HOH
HOH
532
B
HOH
65
4
HOH
HOH
533
B
HOH
66
4
HOH
HOH
534
B
HOH
69
4
HOH
HOH
535
B
HOH
70
4
HOH
HOH
536
B
HOH
71
4
HOH
HOH
537
B
HOH
72
4
HOH
HOH
538
B
HOH
76
4
HOH
HOH
539
B
HOH
80
4
HOH
HOH
540
B
HOH
81
4
HOH
HOH
541
B
HOH
83
4
HOH
HOH
542
B
HOH
85
4
HOH
HOH
543
B
HOH
89
4
HOH
HOH
544
B
HOH
91
4
HOH
HOH
545
B
HOH
93
4
HOH
HOH
546
B
HOH
94
4
HOH
HOH
547
B
HOH
95
4
HOH
HOH
548
B
HOH
96
4
HOH
HOH
549
B
HOH
98
4
HOH
HOH
550
B
HOH
99
4
HOH
HOH
551
B
HOH
100
4
HOH
HOH
552
B
HOH
101
4
HOH
HOH
553
B
HOH
102
4
HOH
HOH
554
B
HOH
106
4
HOH
HOH
555
B
HOH
107
4
HOH
HOH
556
B
HOH
108
4
HOH
HOH
557
B
HOH
109
4
HOH
HOH
558
B
HOH
110
4
HOH
HOH
559
B
HOH
116
4
HOH
HOH
560
B
HOH
117
4
HOH
HOH
561
B
HOH
122
4
HOH
HOH
562
B
HOH
124
4
HOH
HOH
563
B
HOH
126
4
HOH
HOH
564
B
HOH
127
4
HOH
HOH
565
B
HOH
128
4
HOH
HOH
566
B
HOH
130
4
HOH
HOH
567
B
HOH
132
4
HOH
HOH
568
B
HOH
133
4
HOH
HOH
569
B
HOH
135
4
HOH
HOH
570
B
HOH
136
4
HOH
HOH
571
B
HOH
137
4
HOH
HOH
572
B
HOH
140
4
HOH
HOH
573
B
HOH
141
4
HOH
HOH
574
B
HOH
142
4
HOH
HOH
575
B
HOH
145
4
HOH
HOH
576
B
HOH
146
4
HOH
HOH
577
B
HOH
148
4
HOH
HOH
578
B
HOH
149
4
HOH
HOH
579
B
HOH
150
4
HOH
HOH
580
B
HOH
151
4
HOH
HOH
581
B
HOH
153
4
HOH
HOH
582
B
HOH
155
4
HOH
HOH
583
B
HOH
156
4
HOH
HOH
584
B
HOH
157
4
HOH
HOH
585
B
HOH
158
4
HOH
HOH
586
B
HOH
159
4
HOH
HOH
587
B
HOH
161
4
HOH
HOH
588
B
HOH
162
4
HOH
HOH
589
B
HOH
164
4
HOH
HOH
590
B
HOH
167
4
HOH
HOH
591
B
HOH
168
4
HOH
HOH
592
B
HOH
170
4
HOH
HOH
593
B
HOH
172
4
HOH
HOH
594
B
HOH
174
4
HOH
HOH
595
B
HOH
175
4
HOH
HOH
596
B
HOH
183
4
HOH
HOH
597
B
HOH
188
4
HOH
HOH
598
B
HOH
191
4
HOH
HOH
599
B
HOH
203
4
HOH
HOH
600
B
HOH
204
4
HOH
HOH
601
B
HOH
205
4
HOH
HOH
602
B
HOH
206
4
HOH
HOH
603
B
HOH
207
4
HOH
HOH
604
B
HOH
208
4
HOH
HOH
605
B
HOH
209
4
HOH
HOH
606
B
HOH
210
4
HOH
HOH
607
B
HOH
211
4
HOH
HOH
608
B
HOH
212
4
HOH
HOH
609
B
HOH
213
4
HOH
HOH
610
B
HOH
214
4
HOH
HOH
611
B
HOH
215
4
HOH
HOH
612
B
HOH
216
4
HOH
HOH
613
B
HOH
217
4
HOH
HOH
614
B
HOH
218
4
HOH
HOH
615
B
MET
46
n
1
MET
46
A
PRO
47
n
2
PRO
47
A
THR
48
n
3
THR
48
A
LEU
49
n
4
LEU
49
A
LEU
50
n
5
LEU
50
A
ARG
51
n
6
ARG
51
A
VAL
52
n
7
VAL
52
A
TYR
53
n
8
TYR
53
A
ILE
54
n
9
ILE
54
A
ASP
55
n
10
ASP
55
A
GLY
56
n
11
GLY
56
A
PRO
57
n
12
PRO
57
A
HIS
58
n
13
HIS
58
A
GLY
59
n
14
GLY
59
A
MET
60
n
15
MET
60
A
GLY
61
n
16
GLY
61
A
LYS
62
n
17
LYS
62
A
THR
63
n
18
THR
63
A
THR
64
n
19
THR
64
A
THR
65
n
20
THR
65
A
THR
66
n
21
THR
66
A
GLN
67
n
22
GLN
67
A
LEU
68
n
23
LEU
68
A
LEU
69
n
24
LEU
69
A
VAL
70
n
25
VAL
70
A
ALA
71
n
26
ALA
71
A
LEU
72
n
27
LEU
72
A
GLY
73
n
28
GLY
73
A
SER
74
n
29
SER
74
A
ARG
75
n
30
ARG
75
A
ASP
76
n
31
ASP
76
A
ASP
77
n
32
ASP
77
A
ILE
78
n
33
ILE
78
A
VAL
79
n
34
VAL
79
A
TYR
80
n
35
TYR
80
A
VAL
81
n
36
VAL
81
A
PRO
82
n
37
PRO
82
A
GLU
83
n
38
GLU
83
A
PRO
84
n
39
PRO
84
A
MET
85
n
40
MET
85
A
THR
86
n
41
THR
86
A
TYR
87
n
42
TYR
87
A
TRP
88
n
43
TRP
88
A
ARG
89
n
44
ARG
89
A
VAL
90
n
45
VAL
90
A
LEU
91
n
46
LEU
91
A
GLY
92
n
47
GLY
92
A
ALA
93
n
48
ALA
93
A
SER
94
n
49
SER
94
A
GLU
95
n
50
GLU
95
A
THR
96
n
51
THR
96
A
ILE
97
n
52
ILE
97
A
ALA
98
n
53
ALA
98
A
ASN
99
n
54
ASN
99
A
ILE
100
n
55
ILE
100
A
TYR
101
n
56
TYR
101
A
THR
102
n
57
THR
102
A
THR
103
n
58
THR
103
A
GLN
104
n
59
GLN
104
A
HIS
105
n
60
HIS
105
A
ARG
106
n
61
ARG
106
A
LEU
107
n
62
LEU
107
A
ASP
108
n
63
ASP
108
A
GLN
109
n
64
GLN
109
A
GLY
110
n
65
GLY
110
A
GLU
111
n
66
GLU
111
A
ILE
112
n
67
ILE
112
A
SER
113
n
68
SER
113
A
ALA
114
n
69
ALA
114
A
GLY
115
n
70
GLY
115
A
ASP
116
n
71
ASP
116
A
ALA
117
n
72
ALA
117
A
ALA
118
n
73
ALA
118
A
VAL
119
n
74
VAL
119
A
VAL
120
n
75
VAL
120
A
MET
121
n
76
MET
121
A
THR
122
n
77
THR
122
A
SER
123
n
78
SER
123
A
ALA
124
n
79
ALA
124
A
GLN
125
n
80
GLN
125
A
ILE
126
n
81
ILE
126
A
THR
127
n
82
THR
127
A
MET
128
n
83
MET
128
A
GLY
129
n
84
GLY
129
A
MET
130
n
85
MET
130
A
PRO
131
n
86
PRO
131
A
TYR
132
n
87
TYR
132
A
ALA
133
n
88
ALA
133
A
VAL
134
n
89
VAL
134
A
THR
135
n
90
THR
135
A
ASP
136
n
91
ASP
136
A
ALA
137
n
92
ALA
137
A
VAL
138
n
93
VAL
138
A
LEU
139
n
94
LEU
139
A
ALA
140
n
95
ALA
140
A
PRO
141
n
96
PRO
141
A
HIS
142
n
97
HIS
142
A
ILE
143
n
98
ILE
143
A
GLY
144
n
99
GLY
144
A
GLY
145
n
100
GLY
145
A
GLU
146
n
101
GLU
146
A
ALA
147
n
102
ALA
147
A
n
103
148
A
n
104
149
A
n
105
150
A
n
106
151
A
n
107
152
A
PRO
153
n
108
PRO
153
A
PRO
154
n
109
PRO
154
A
PRO
155
n
110
PRO
155
A
ALA
156
n
111
ALA
156
A
LEU
157
n
112
LEU
157
A
THR
158
n
113
THR
158
A
LEU
159
n
114
LEU
159
A
ILE
160
n
115
ILE
160
A
PHE
161
n
116
PHE
161
A
ASP
162
n
117
ASP
162
A
ARG
163
n
118
ARG
163
A
HIS
164
n
119
HIS
164
A
PRO
165
n
120
PRO
165
A
ILE
166
n
121
ILE
166
A
ALA
167
n
122
ALA
167
A
ALA
168
n
123
ALA
168
A
LEU
169
n
124
LEU
169
A
LEU
170
n
125
LEU
170
A
CYS
171
n
126
CYS
171
A
TYR
172
n
127
TYR
172
A
PRO
173
n
128
PRO
173
A
ALA
174
n
129
ALA
174
A
ALA
175
n
130
ALA
175
A
ARG
176
n
131
ARG
176
A
TYR
177
n
132
TYR
177
A
LEU
178
n
133
LEU
178
A
MET
179
n
134
MET
179
A
GLY
180
n
135
GLY
180
A
SER
181
n
136
SER
181
A
MET
182
n
137
MET
182
A
THR
183
n
138
THR
183
A
PRO
184
n
139
PRO
184
A
GLN
185
n
140
GLN
185
A
ALA
186
n
141
ALA
186
A
VAL
187
n
142
VAL
187
A
LEU
188
n
143
LEU
188
A
ALA
189
n
144
ALA
189
A
PHE
190
n
145
PHE
190
A
VAL
191
n
146
VAL
191
A
ALA
192
n
147
ALA
192
A
LEU
193
n
148
LEU
193
A
ILE
194
n
149
ILE
194
A
PRO
195
n
150
PRO
195
A
PRO
196
n
151
PRO
196
A
THR
197
n
152
THR
197
A
LEU
198
n
153
LEU
198
A
PRO
199
n
154
PRO
199
A
GLY
200
n
155
GLY
200
A
THR
201
n
156
THR
201
A
ASN
202
n
157
ASN
202
A
ILE
203
n
158
ILE
203
A
VAL
204
n
159
VAL
204
A
LEU
205
n
160
LEU
205
A
GLY
206
n
161
GLY
206
A
ALA
207
n
162
ALA
207
A
LEU
208
n
163
LEU
208
A
PRO
209
n
164
PRO
209
A
GLU
210
n
165
GLU
210
A
ASP
211
n
166
ASP
211
A
ARG
212
n
167
ARG
212
A
HIS
213
n
168
HIS
213
A
ILE
214
n
169
ILE
214
A
ASP
215
n
170
ASP
215
A
ARG
216
n
171
ARG
216
A
LEU
217
n
172
LEU
217
A
ALA
218
n
173
ALA
218
A
LYS
219
n
174
LYS
219
A
ARG
220
n
175
ARG
220
A
GLN
221
n
176
GLN
221
A
ARG
222
n
177
ARG
222
A
PRO
223
n
178
PRO
223
A
GLY
224
n
179
GLY
224
A
GLU
225
n
180
GLU
225
A
ARG
226
n
181
ARG
226
A
LEU
227
n
182
LEU
227
A
ASP
228
n
183
ASP
228
A
LEU
229
n
184
LEU
229
A
ALA
230
n
185
ALA
230
A
MET
231
n
186
MET
231
A
LEU
232
n
187
LEU
232
A
ALA
233
n
188
ALA
233
A
ALA
234
n
189
ALA
234
A
ILE
235
n
190
ILE
235
A
ARG
236
n
191
ARG
236
A
ARG
237
n
192
ARG
237
A
VAL
238
n
193
VAL
238
A
TYR
239
n
194
TYR
239
A
GLY
240
n
195
GLY
240
A
LEU
241
n
196
LEU
241
A
LEU
242
n
197
LEU
242
A
ALA
243
n
198
ALA
243
A
ASN
244
n
199
ASN
244
A
THR
245
n
200
THR
245
A
VAL
246
n
201
VAL
246
A
ARG
247
n
202
ARG
247
A
TYR
248
n
203
TYR
248
A
LEU
249
n
204
LEU
249
A
GLN
250
n
205
GLN
250
A
CYS
251
n
206
CYS
251
A
GLY
252
n
207
GLY
252
A
GLY
253
n
208
GLY
253
A
SER
254
n
209
SER
254
A
TRP
255
n
210
TRP
255
A
ARG
256
n
211
ARG
256
A
GLU
257
n
212
GLU
257
A
ASP
258
n
213
ASP
258
A
TRP
259
n
214
TRP
259
A
GLY
260
n
215
GLY
260
A
GLN
261
n
216
GLN
261
A
LEU
262
n
217
LEU
262
A
SER
263
n
218
SER
263
A
GLY
264
n
219
GLY
264
A
n
220
265
A
n
221
266
A
n
222
267
A
n
223
268
A
n
224
269
A
n
225
270
A
n
226
271
A
n
227
272
A
n
228
273
A
n
229
274
A
n
230
275
A
n
231
276
A
n
232
277
A
n
233
278
A
n
234
279
A
PRO
280
n
235
PRO
280
A
ARG
281
n
236
ARG
281
A
PRO
282
n
237
PRO
282
A
HIS
283
n
238
HIS
283
A
ILE
284
n
239
ILE
284
A
GLY
285
n
240
GLY
285
A
ASP
286
n
241
ASP
286
A
THR
287
n
242
THR
287
A
LEU
288
n
243
LEU
288
A
PHE
289
n
244
PHE
289
A
THR
290
n
245
THR
290
A
LEU
291
n
246
LEU
291
A
PHE
292
n
247
PHE
292
A
ARG
293
n
248
ARG
293
A
ALA
294
n
249
ALA
294
A
PRO
295
n
250
PRO
295
A
GLU
296
n
251
GLU
296
A
LEU
297
n
252
LEU
297
A
LEU
298
n
253
LEU
298
A
ALA
299
n
254
ALA
299
A
PRO
300
n
255
PRO
300
A
ASN
301
n
256
ASN
301
A
GLY
302
n
257
GLY
302
A
ASP
303
n
258
ASP
303
A
LEU
304
n
259
LEU
304
A
TYR
305
n
260
TYR
305
A
ASN
306
n
261
ASN
306
A
VAL
307
n
262
VAL
307
A
PHE
308
n
263
PHE
308
A
ALA
309
n
264
ALA
309
A
TRP
310
n
265
TRP
310
A
ALA
311
n
266
ALA
311
A
LEU
312
n
267
LEU
312
A
ASP
313
n
268
ASP
313
A
VAL
314
n
269
VAL
314
A
LEU
315
n
270
LEU
315
A
ALA
316
n
271
ALA
316
A
LYS
317
n
272
LYS
317
A
ARG
318
n
273
ARG
318
A
LEU
319
n
274
LEU
319
A
ARG
320
n
275
ARG
320
A
SER
321
n
276
SER
321
A
MET
322
n
277
MET
322
A
HIS
323
n
278
HIS
323
A
VAL
324
n
279
VAL
324
A
PHE
325
n
280
PHE
325
A
ILE
326
n
281
ILE
326
A
LEU
327
n
282
LEU
327
A
ASP
328
n
283
ASP
328
A
TYR
329
n
284
TYR
329
A
ASP
330
n
285
ASP
330
A
GLN
331
n
286
GLN
331
A
SER
332
n
287
SER
332
A
PRO
333
n
288
PRO
333
A
ALA
334
n
289
ALA
334
A
GLY
335
n
290
GLY
335
A
CYS
336
n
291
CYS
336
A
ARG
337
n
292
ARG
337
A
ASP
338
n
293
ASP
338
A
ALA
339
n
294
ALA
339
A
LEU
340
n
295
LEU
340
A
LEU
341
n
296
LEU
341
A
GLN
342
n
297
GLN
342
A
LEU
343
n
298
LEU
343
A
THR
344
n
299
THR
344
A
SER
345
n
300
SER
345
A
GLY
346
n
301
GLY
346
A
MET
347
n
302
MET
347
A
VAL
348
n
303
VAL
348
A
GLN
349
n
304
GLN
349
A
THR
350
n
305
THR
350
A
HIS
351
n
306
HIS
351
A
VAL
352
n
307
VAL
352
A
THR
353
n
308
THR
353
A
THR
354
n
309
THR
354
A
PRO
355
n
310
PRO
355
A
GLY
356
n
311
GLY
356
A
SER
357
n
312
SER
357
A
ILE
358
n
313
ILE
358
A
PRO
359
n
314
PRO
359
A
THR
360
n
315
THR
360
A
ILE
361
n
316
ILE
361
A
CYS
362
n
317
CYS
362
A
ASP
363
n
318
ASP
363
A
LEU
364
n
319
LEU
364
A
ALA
365
n
320
ALA
365
A
ARG
366
n
321
ARG
366
A
THR
367
n
322
THR
367
A
PHE
368
n
323
PHE
368
A
ALA
369
n
324
ALA
369
A
ARG
370
n
325
ARG
370
A
GLU
371
n
326
GLU
371
A
MET
372
n
327
MET
372
A
GLY
373
n
328
GLY
373
A
GLU
374
n
329
GLU
374
A
n
330
375
A
n
331
376
A
MET
46
n
1
MET
46
B
PRO
47
n
2
PRO
47
B
THR
48
n
3
THR
48
B
LEU
49
n
4
LEU
49
B
LEU
50
n
5
LEU
50
B
ARG
51
n
6
ARG
51
B
VAL
52
n
7
VAL
52
B
TYR
53
n
8
TYR
53
B
ILE
54
n
9
ILE
54
B
ASP
55
n
10
ASP
55
B
GLY
56
n
11
GLY
56
B
PRO
57
n
12
PRO
57
B
HIS
58
n
13
HIS
58
B
GLY
59
n
14
GLY
59
B
MET
60
n
15
MET
60
B
GLY
61
n
16
GLY
61
B
LYS
62
n
17
LYS
62
B
THR
63
n
18
THR
63
B
THR
64
n
19
THR
64
B
THR
65
n
20
THR
65
B
THR
66
n
21
THR
66
B
GLN
67
n
22
GLN
67
B
LEU
68
n
23
LEU
68
B
LEU
69
n
24
LEU
69
B
VAL
70
n
25
VAL
70
B
ALA
71
n
26
ALA
71
B
LEU
72
n
27
LEU
72
B
GLY
73
n
28
GLY
73
B
SER
74
n
29
SER
74
B
ARG
75
n
30
ARG
75
B
ASP
76
n
31
ASP
76
B
ASP
77
n
32
ASP
77
B
ILE
78
n
33
ILE
78
B
VAL
79
n
34
VAL
79
B
TYR
80
n
35
TYR
80
B
VAL
81
n
36
VAL
81
B
PRO
82
n
37
PRO
82
B
GLU
83
n
38
GLU
83
B
PRO
84
n
39
PRO
84
B
MET
85
n
40
MET
85
B
THR
86
n
41
THR
86
B
TYR
87
n
42
TYR
87
B
TRP
88
n
43
TRP
88
B
ARG
89
n
44
ARG
89
B
VAL
90
n
45
VAL
90
B
LEU
91
n
46
LEU
91
B
GLY
92
n
47
GLY
92
B
ALA
93
n
48
ALA
93
B
SER
94
n
49
SER
94
B
GLU
95
n
50
GLU
95
B
THR
96
n
51
THR
96
B
ILE
97
n
52
ILE
97
B
ALA
98
n
53
ALA
98
B
ASN
99
n
54
ASN
99
B
ILE
100
n
55
ILE
100
B
TYR
101
n
56
TYR
101
B
THR
102
n
57
THR
102
B
THR
103
n
58
THR
103
B
GLN
104
n
59
GLN
104
B
HIS
105
n
60
HIS
105
B
ARG
106
n
61
ARG
106
B
LEU
107
n
62
LEU
107
B
ASP
108
n
63
ASP
108
B
GLN
109
n
64
GLN
109
B
GLY
110
n
65
GLY
110
B
GLU
111
n
66
GLU
111
B
ILE
112
n
67
ILE
112
B
SER
113
n
68
SER
113
B
ALA
114
n
69
ALA
114
B
GLY
115
n
70
GLY
115
B
ASP
116
n
71
ASP
116
B
ALA
117
n
72
ALA
117
B
ALA
118
n
73
ALA
118
B
VAL
119
n
74
VAL
119
B
VAL
120
n
75
VAL
120
B
MET
121
n
76
MET
121
B
THR
122
n
77
THR
122
B
SER
123
n
78
SER
123
B
ALA
124
n
79
ALA
124
B
GLN
125
n
80
GLN
125
B
ILE
126
n
81
ILE
126
B
THR
127
n
82
THR
127
B
MET
128
n
83
MET
128
B
GLY
129
n
84
GLY
129
B
MET
130
n
85
MET
130
B
PRO
131
n
86
PRO
131
B
TYR
132
n
87
TYR
132
B
ALA
133
n
88
ALA
133
B
VAL
134
n
89
VAL
134
B
THR
135
n
90
THR
135
B
ASP
136
n
91
ASP
136
B
ALA
137
n
92
ALA
137
B
VAL
138
n
93
VAL
138
B
LEU
139
n
94
LEU
139
B
ALA
140
n
95
ALA
140
B
PRO
141
n
96
PRO
141
B
HIS
142
n
97
HIS
142
B
ILE
143
n
98
ILE
143
B
GLY
144
n
99
GLY
144
B
GLY
145
n
100
GLY
145
B
GLU
146
n
101
GLU
146
B
ALA
147
n
102
ALA
147
B
n
103
148
B
n
104
149
B
n
105
150
B
n
106
151
B
ALA
152
n
107
ALA
152
B
PRO
153
n
108
PRO
153
B
PRO
154
n
109
PRO
154
B
PRO
155
n
110
PRO
155
B
ALA
156
n
111
ALA
156
B
LEU
157
n
112
LEU
157
B
THR
158
n
113
THR
158
B
LEU
159
n
114
LEU
159
B
ILE
160
n
115
ILE
160
B
PHE
161
n
116
PHE
161
B
ASP
162
n
117
ASP
162
B
ARG
163
n
118
ARG
163
B
HIS
164
n
119
HIS
164
B
PRO
165
n
120
PRO
165
B
ILE
166
n
121
ILE
166
B
ALA
167
n
122
ALA
167
B
ALA
168
n
123
ALA
168
B
LEU
169
n
124
LEU
169
B
LEU
170
n
125
LEU
170
B
CYS
171
n
126
CYS
171
B
TYR
172
n
127
TYR
172
B
PRO
173
n
128
PRO
173
B
ALA
174
n
129
ALA
174
B
ALA
175
n
130
ALA
175
B
ARG
176
n
131
ARG
176
B
TYR
177
n
132
TYR
177
B
LEU
178
n
133
LEU
178
B
MET
179
n
134
MET
179
B
GLY
180
n
135
GLY
180
B
SER
181
n
136
SER
181
B
MET
182
n
137
MET
182
B
THR
183
n
138
THR
183
B
PRO
184
n
139
PRO
184
B
GLN
185
n
140
GLN
185
B
ALA
186
n
141
ALA
186
B
VAL
187
n
142
VAL
187
B
LEU
188
n
143
LEU
188
B
ALA
189
n
144
ALA
189
B
PHE
190
n
145
PHE
190
B
VAL
191
n
146
VAL
191
B
ALA
192
n
147
ALA
192
B
LEU
193
n
148
LEU
193
B
ILE
194
n
149
ILE
194
B
PRO
195
n
150
PRO
195
B
PRO
196
n
151
PRO
196
B
THR
197
n
152
THR
197
B
LEU
198
n
153
LEU
198
B
PRO
199
n
154
PRO
199
B
GLY
200
n
155
GLY
200
B
THR
201
n
156
THR
201
B
ASN
202
n
157
ASN
202
B
ILE
203
n
158
ILE
203
B
VAL
204
n
159
VAL
204
B
LEU
205
n
160
LEU
205
B
GLY
206
n
161
GLY
206
B
ALA
207
n
162
ALA
207
B
LEU
208
n
163
LEU
208
B
PRO
209
n
164
PRO
209
B
GLU
210
n
165
GLU
210
B
ASP
211
n
166
ASP
211
B
ARG
212
n
167
ARG
212
B
HIS
213
n
168
HIS
213
B
ILE
214
n
169
ILE
214
B
ASP
215
n
170
ASP
215
B
ARG
216
n
171
ARG
216
B
LEU
217
n
172
LEU
217
B
ALA
218
n
173
ALA
218
B
LYS
219
n
174
LYS
219
B
ARG
220
n
175
ARG
220
B
n
176
221
B
n
177
222
B
PRO
223
n
178
PRO
223
B
GLY
224
n
179
GLY
224
B
GLU
225
n
180
GLU
225
B
ARG
226
n
181
ARG
226
B
LEU
227
n
182
LEU
227
B
ASP
228
n
183
ASP
228
B
LEU
229
n
184
LEU
229
B
ALA
230
n
185
ALA
230
B
MET
231
n
186
MET
231
B
LEU
232
n
187
LEU
232
B
ALA
233
n
188
ALA
233
B
ALA
234
n
189
ALA
234
B
ILE
235
n
190
ILE
235
B
ARG
236
n
191
ARG
236
B
ARG
237
n
192
ARG
237
B
VAL
238
n
193
VAL
238
B
TYR
239
n
194
TYR
239
B
GLY
240
n
195
GLY
240
B
LEU
241
n
196
LEU
241
B
LEU
242
n
197
LEU
242
B
ALA
243
n
198
ALA
243
B
ASN
244
n
199
ASN
244
B
THR
245
n
200
THR
245
B
VAL
246
n
201
VAL
246
B
ARG
247
n
202
ARG
247
B
TYR
248
n
203
TYR
248
B
LEU
249
n
204
LEU
249
B
GLN
250
n
205
GLN
250
B
CYS
251
n
206
CYS
251
B
GLY
252
n
207
GLY
252
B
GLY
253
n
208
GLY
253
B
SER
254
n
209
SER
254
B
TRP
255
n
210
TRP
255
B
ARG
256
n
211
ARG
256
B
GLU
257
n
212
GLU
257
B
ASP
258
n
213
ASP
258
B
TRP
259
n
214
TRP
259
B
GLY
260
n
215
GLY
260
B
GLN
261
n
216
GLN
261
B
LEU
262
n
217
LEU
262
B
SER
263
n
218
SER
263
B
GLY
264
n
219
GLY
264
B
n
220
265
B
n
221
266
B
n
222
267
B
n
223
268
B
n
224
269
B
n
225
270
B
n
226
271
B
n
227
272
B
n
228
273
B
PRO
274
n
229
PRO
274
B
GLN
275
n
230
GLN
275
B
SER
276
n
231
SER
276
B
ASN
277
n
232
ASN
277
B
ALA
278
n
233
ALA
278
B
GLY
279
n
234
GLY
279
B
PRO
280
n
235
PRO
280
B
ARG
281
n
236
ARG
281
B
PRO
282
n
237
PRO
282
B
HIS
283
n
238
HIS
283
B
ILE
284
n
239
ILE
284
B
GLY
285
n
240
GLY
285
B
ASP
286
n
241
ASP
286
B
THR
287
n
242
THR
287
B
LEU
288
n
243
LEU
288
B
PHE
289
n
244
PHE
289
B
THR
290
n
245
THR
290
B
LEU
291
n
246
LEU
291
B
PHE
292
n
247
PHE
292
B
ARG
293
n
248
ARG
293
B
ALA
294
n
249
ALA
294
B
PRO
295
n
250
PRO
295
B
GLU
296
n
251
GLU
296
B
LEU
297
n
252
LEU
297
B
LEU
298
n
253
LEU
298
B
ALA
299
n
254
ALA
299
B
PRO
300
n
255
PRO
300
B
ASN
301
n
256
ASN
301
B
GLY
302
n
257
GLY
302
B
ASP
303
n
258
ASP
303
B
LEU
304
n
259
LEU
304
B
TYR
305
n
260
TYR
305
B
ASN
306
n
261
ASN
306
B
VAL
307
n
262
VAL
307
B
PHE
308
n
263
PHE
308
B
ALA
309
n
264
ALA
309
B
TRP
310
n
265
TRP
310
B
ALA
311
n
266
ALA
311
B
LEU
312
n
267
LEU
312
B
ASP
313
n
268
ASP
313
B
VAL
314
n
269
VAL
314
B
LEU
315
n
270
LEU
315
B
ALA
316
n
271
ALA
316
B
LYS
317
n
272
LYS
317
B
ARG
318
n
273
ARG
318
B
LEU
319
n
274
LEU
319
B
ARG
320
n
275
ARG
320
B
SER
321
n
276
SER
321
B
MET
322
n
277
MET
322
B
HIS
323
n
278
HIS
323
B
VAL
324
n
279
VAL
324
B
PHE
325
n
280
PHE
325
B
ILE
326
n
281
ILE
326
B
LEU
327
n
282
LEU
327
B
ASP
328
n
283
ASP
328
B
TYR
329
n
284
TYR
329
B
ASP
330
n
285
ASP
330
B
GLN
331
n
286
GLN
331
B
SER
332
n
287
SER
332
B
PRO
333
n
288
PRO
333
B
ALA
334
n
289
ALA
334
B
GLY
335
n
290
GLY
335
B
CYS
336
n
291
CYS
336
B
ARG
337
n
292
ARG
337
B
ASP
338
n
293
ASP
338
B
ALA
339
n
294
ALA
339
B
LEU
340
n
295
LEU
340
B
LEU
341
n
296
LEU
341
B
GLN
342
n
297
GLN
342
B
LEU
343
n
298
LEU
343
B
THR
344
n
299
THR
344
B
SER
345
n
300
SER
345
B
GLY
346
n
301
GLY
346
B
MET
347
n
302
MET
347
B
VAL
348
n
303
VAL
348
B
GLN
349
n
304
GLN
349
B
THR
350
n
305
THR
350
B
HIS
351
n
306
HIS
351
B
VAL
352
n
307
VAL
352
B
THR
353
n
308
THR
353
B
THR
354
n
309
THR
354
B
PRO
355
n
310
PRO
355
B
GLY
356
n
311
GLY
356
B
SER
357
n
312
SER
357
B
ILE
358
n
313
ILE
358
B
PRO
359
n
314
PRO
359
B
THR
360
n
315
THR
360
B
ILE
361
n
316
ILE
361
B
CYS
362
n
317
CYS
362
B
ASP
363
n
318
ASP
363
B
LEU
364
n
319
LEU
364
B
ALA
365
n
320
ALA
365
B
ARG
366
n
321
ARG
366
B
THR
367
n
322
THR
367
B
PHE
368
n
323
PHE
368
B
ALA
369
n
324
ALA
369
B
ARG
370
n
325
ARG
370
B
GLU
371
n
326
GLU
371
B
MET
372
n
327
MET
372
B
GLY
373
n
328
GLY
373
B
GLU
374
n
329
GLU
374
B
n
330
375
B
n
331
376
B
author_and_software_defined_assembly
PISA
2
dimeric
4000
-92
23270
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
81
A
N
VAL
36
A
O
ILE
160
A
O
ILE
115
A
O
LEU
159
A
O
LEU
114
A
N
LEU
50
A
N
LEU
5
A
N
LEU
49
A
N
LEU
4
A
O
THR
350
A
O
THR
305
A
O
HIS
351
A
O
HIS
306
A
N
GLY
144
A
N
GLY
99
A
N
VAL
81
A
N
VAL
36
A
O
ILE
160
A
O
ILE
115
A
O
LEU
159
A
O
LEU
114
A
N
LEU
50
A
N
LEU
5
A
N
TYR
53
A
N
TYR
8
A
O
VAL
204
A
O
VAL
159
A
N
LEU
205
A
N
LEU
160
A
O
LEU
327
A
O
LEU
282
B
N
VAL
81
B
N
VAL
36
B
O
ILE
160
B
O
ILE
115
B
O
LEU
159
B
O
LEU
114
B
N
LEU
50
B
N
LEU
5
B
N
LEU
49
B
N
LEU
4
B
O
THR
350
B
O
THR
305
B
O
HIS
351
B
O
HIS
306
B
N
GLY
144
B
N
GLY
99
B
N
VAL
81
B
N
VAL
36
B
O
ILE
160
B
O
ILE
115
B
O
LEU
159
B
O
LEU
114
B
N
LEU
50
B
N
LEU
5
B
N
TYR
53
B
N
TYR
8
B
O
VAL
204
B
O
VAL
159
B
N
LEU
205
B
N
LEU
160
B
O
PHE
325
B
O
PHE
280
1
A
HOH
599
I
HOH
1
B
HOH
501
J
HOH
1
B
HOH
522
J
HOH
1
B
HOH
565
J
HOH
1
B
HOH
586
J
HOH
1
A
CG
LEU
69
A
CG
LEU
24
1
Y
1
A
CD1
LEU
69
A
CD1
LEU
24
1
Y
1
A
CD2
LEU
69
A
CD2
LEU
24
1
Y
1
A
CG1
VAL
70
A
CG1
VAL
25
1
Y
1
A
CG2
VAL
70
A
CG2
VAL
25
1
Y
1
A
CG
LEU
72
A
CG
LEU
27
1
Y
1
A
CD1
LEU
72
A
CD1
LEU
27
1
Y
1
A
CD2
LEU
72
A
CD2
LEU
27
1
Y
1
A
CG
ARG
75
A
CG
ARG
30
1
Y
1
A
CD
ARG
75
A
CD
ARG
30
1
Y
1
A
NE
ARG
75
A
NE
ARG
30
1
Y
1
A
CZ
ARG
75
A
CZ
ARG
30
1
Y
1
A
NH1
ARG
75
A
NH1
ARG
30
1
Y
1
A
NH2
ARG
75
A
NH2
ARG
30
1
Y
1
A
CG
ARG
366
A
CG
ARG
321
1
Y
1
A
CD
ARG
366
A
CD
ARG
321
1
Y
1
A
NE
ARG
366
A
NE
ARG
321
1
Y
1
A
CZ
ARG
366
A
CZ
ARG
321
1
Y
1
A
NH1
ARG
366
A
NH1
ARG
321
1
Y
1
A
NH2
ARG
366
A
NH2
ARG
321
1
Y
1
A
CD
ARG
370
A
CD
ARG
325
1
Y
1
A
NE
ARG
370
A
NE
ARG
325
1
Y
1
A
CZ
ARG
370
A
CZ
ARG
325
1
Y
1
A
NH1
ARG
370
A
NH1
ARG
325
1
Y
1
A
NH2
ARG
370
A
NH2
ARG
325
1
Y
1
B
CG
LYS
219
B
CG
LYS
174
1
Y
1
B
CD
LYS
219
B
CD
LYS
174
1
Y
1
B
CE
LYS
219
B
CE
LYS
174
1
Y
1
B
NZ
LYS
219
B
NZ
LYS
174
1
Y
1
B
CG
LEU
364
B
CG
LEU
319
1
Y
1
B
CD1
LEU
364
B
CD1
LEU
319
1
Y
1
B
CD2
LEU
364
B
CD2
LEU
319
1
Y
1
A
GLY
148
A
GLY
103
1
Y
1
A
SER
149
A
SER
104
1
Y
1
A
SER
150
A
SER
105
1
Y
1
A
HIS
151
A
HIS
106
1
Y
1
A
ALA
152
A
ALA
107
1
Y
1
A
THR
265
A
THR
220
1
Y
1
A
ALA
266
A
ALA
221
1
Y
1
A
VAL
267
A
VAL
222
1
Y
1
A
PRO
268
A
PRO
223
1
Y
1
A
PRO
269
A
PRO
224
1
Y
1
A
GLN
270
A
GLN
225
1
Y
1
A
GLY
271
A
GLY
226
1
Y
1
A
ALA
272
A
ALA
227
1
Y
1
A
GLU
273
A
GLU
228
1
Y
1
A
PRO
274
A
PRO
229
1
Y
1
A
GLN
275
A
GLN
230
1
Y
1
A
SER
276
A
SER
231
1
Y
1
A
ASN
277
A
ASN
232
1
Y
1
A
ALA
278
A
ALA
233
1
Y
1
A
GLY
279
A
GLY
234
1
Y
1
A
ALA
375
A
ALA
330
1
Y
1
A
ASN
376
A
ASN
331
1
Y
1
B
GLY
148
B
GLY
103
1
Y
1
B
SER
149
B
SER
104
1
Y
1
B
SER
150
B
SER
105
1
Y
1
B
HIS
151
B
HIS
106
1
Y
1
B
GLN
221
B
GLN
176
1
Y
1
B
ARG
222
B
ARG
177
1
Y
1
B
THR
265
B
THR
220
1
Y
1
B
ALA
266
B
ALA
221
1
Y
1
B
VAL
267
B
VAL
222
1
Y
1
B
PRO
268
B
PRO
223
1
Y
1
B
PRO
269
B
PRO
224
1
Y
1
B
GLN
270
B
GLN
225
1
Y
1
B
GLY
271
B
GLY
226
1
Y
1
B
ALA
272
B
ALA
227
1
Y
1
B
GLU
273
B
GLU
228
1
Y
1
B
ALA
375
B
ALA
330
1
Y
1
B
ASN
376
B
ASN
331
1
Y
1
A
VAL
90
-129.55
-56.32
1
A
ARG
163
80.47
151.31
1
A
LEU
170
-145.69
-56.13
1
B
VAL
90
-131.68
-56.21
1
B
ARG
163
80.26
151.36
1
B
LEU
170
-151.66
-59.30
1
B
LYS
219
-103.96
-88.09
1
B
SER
263
-167.48
-78.82
1
B
GLN
275
-172.54
143.72
1
B
ASN
277
70.76
-3.18
33.04
0.2138
0.1779
0.207
0.1796
2.100
39.868
2000
42778
42769
4.68
99.86
0.20
RANDOM
1
THROUGHOUT
1.34
MOLECULAR REPLACEMENT
22.79
0.90
1.11
PDB ENTRY 3F0T
ML
FLAT BULK SOLVENT MODEL
2.100
39.868
218
4994
50
0
4726
0.008
4921
1.091
6720
13.376
1798
0.075
778
0.006
855
0.2534
0.1865
2.1525
141
2881
100.00
0.2164
0.1801
2.2107
141
2868
100.00
0.2507
0.1784
2.2758
141
2881
100.00
0.2313
0.1767
2.3492
142
2880
100.00
0.2582
0.1762
2.4332
141
2867
100.00
0.2345
0.1846
2.5306
141
2898
100.00
0.2340
0.1918
2.6457
143
2896
100.00
0.2388
0.1894
2.7852
142
2888
100.00
0.2404
0.1982
2.9596
142
2911
100.00
0.2452
0.1959
3.1880
142
2902
100.00
0.2076
0.1885
3.5087
143
2926
100.00
0.2123
0.1598
4.0160
145
2941
100.00
0.1605
0.1479
5.0581
146
2959
100.00
0.1999
0.1898
39.8748
150
3071
100.00
30.1
2.1
39.87
4IVP
42829
42825
2.0
2.0
0.082
0.078
1
19.2
11
100
0.319
2.1
2.21
0.075
6186
0.305
1
0.117
100
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.1_1168)
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with IN51/20
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
GLY
61
A
GLY
16
HELX_P
A
ALA
71
A
ALA
26
1
1
11
A
PRO
84
A
PRO
39
HELX_P
A
VAL
90
A
VAL
45
1
2
7
A
GLU
95
A
GLU
50
HELX_P
A
GLN
109
A
GLN
64
1
3
15
A
SER
113
A
SER
68
HELX_P
A
ALA
140
A
ALA
95
1
4
28
A
PRO
165
A
PRO
120
HELX_P
A
LEU
170
A
LEU
125
1
5
6
A
LEU
170
A
LEU
125
HELX_P
A
MET
179
A
MET
134
1
6
10
A
THR
183
A
THR
138
HELX_P
A
LEU
193
A
LEU
148
1
7
11
A
PRO
209
A
PRO
164
HELX_P
A
ARG
220
A
ARG
175
1
8
12
A
ASP
228
A
ASP
183
HELX_P
A
CYS
251
A
CYS
206
1
9
24
A
SER
254
A
SER
209
HELX_P
A
TRP
259
A
TRP
214
1
10
6
A
GLY
260
A
GLY
215
HELX_P
A
SER
263
A
SER
218
5
11
4
A
HIS
283
A
HIS
238
HELX_P
A
LEU
298
A
LEU
253
5
12
16
A
TYR
305
A
TYR
260
HELX_P
A
SER
321
A
SER
276
1
13
17
A
SER
332
A
SER
287
HELX_P
A
THR
344
A
THR
299
1
14
13
A
SER
345
A
SER
300
HELX_P
A
MET
347
A
MET
302
5
15
3
A
GLY
356
A
GLY
311
HELX_P
A
GLY
373
A
GLY
328
1
16
18
B
GLY
61
B
GLY
16
HELX_P
B
GLY
73
B
GLY
28
1
17
13
B
PRO
84
B
PRO
39
HELX_P
B
VAL
90
B
VAL
45
1
18
7
B
GLU
95
B
GLU
50
HELX_P
B
GLN
109
B
GLN
64
1
19
15
B
SER
113
B
SER
68
HELX_P
B
ALA
140
B
ALA
95
1
20
28
B
HIS
164
B
HIS
119
HELX_P
B
LEU
170
B
LEU
125
1
21
7
B
LEU
170
B
LEU
125
HELX_P
B
MET
179
B
MET
134
1
22
10
B
THR
183
B
THR
138
HELX_P
B
LEU
193
B
LEU
148
1
23
11
B
PRO
209
B
PRO
164
HELX_P
B
ARG
220
B
ARG
175
1
24
12
B
ASP
228
B
ASP
183
HELX_P
B
CYS
251
B
CYS
206
1
25
24
B
SER
254
B
SER
209
HELX_P
B
TRP
259
B
TRP
214
1
26
6
B
GLY
260
B
GLY
215
HELX_P
B
LEU
262
B
LEU
217
5
27
3
B
HIS
283
B
HIS
238
HELX_P
B
ARG
293
B
ARG
248
5
28
11
B
ALA
294
B
ALA
249
HELX_P
B
LEU
298
B
LEU
253
5
29
5
B
TYR
305
B
TYR
260
HELX_P
B
SER
321
B
SER
276
1
30
17
B
SER
332
B
SER
287
HELX_P
B
SER
345
B
SER
300
1
31
14
B
GLY
356
B
GLY
311
HELX_P
B
GLY
373
B
GLY
328
1
32
18
TRANSFERASE
DNA synthesis, PET imaging TRACER, ATP binding, nucleotide binding, TRANSFERASE
KITH_HHV11
UNP
1
46
P03176
MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQ
ITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL
GALPEDRHIDRLAKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRPHIG
DTLFTLFRAPELLAPNGDLYNVFAWALDVLAKRLRSMHVFILDYDQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDLA
RTFAREMGEAN
46
376
4IVP
46
376
P03176
A
1
1
331
46
376
4IVP
46
376
P03176
B
1
1
331
5
5
5
5
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
A
ILE
78
A
ILE
33
A
VAL
81
A
VAL
36
A
LEU
157
A
LEU
112
A
ASP
162
A
ASP
117
A
THR
48
A
THR
3
A
ILE
54
A
ILE
9
A
THR
350
A
THR
305
A
VAL
352
A
VAL
307
A
ILE
143
A
ILE
98
A
GLU
146
A
GLU
101
A
ILE
78
A
ILE
33
A
VAL
81
A
VAL
36
A
LEU
157
A
LEU
112
A
ASP
162
A
ASP
117
A
THR
48
A
THR
3
A
ILE
54
A
ILE
9
A
ASN
202
A
ASN
157
A
ALA
207
A
ALA
162
A
HIS
323
A
HIS
278
A
ASP
328
A
ASP
283
B
ILE
78
B
ILE
33
B
VAL
81
B
VAL
36
B
LEU
157
B
LEU
112
B
ASP
162
B
ASP
117
B
THR
48
B
THR
3
B
ILE
54
B
ILE
9
B
THR
350
B
THR
305
B
VAL
352
B
VAL
307
B
ILE
143
B
ILE
98
B
GLU
146
B
GLU
101
B
ILE
78
B
ILE
33
B
VAL
81
B
VAL
36
B
LEU
157
B
LEU
112
B
ASP
162
B
ASP
117
B
THR
48
B
THR
3
B
ILE
54
B
ILE
9
B
ASN
202
B
ASN
157
B
ALA
207
B
ALA
162
B
HIS
323
B
HIS
278
B
ASP
328
B
ASP
283
BINDING SITE FOR RESIDUE I51 A 401
A
I51
401
Software
13
BINDING SITE FOR RESIDUE SO4 A 402
A
SO4
402
Software
8
BINDING SITE FOR RESIDUE SO4 A 403
A
SO4
403
Software
4
BINDING SITE FOR RESIDUE I51 B 401
B
I51
401
Software
11
BINDING SITE FOR RESIDUE SO4 B 402
B
SO4
402
Software
7
BINDING SITE FOR RESIDUE SO4 B 403
B
SO4
403
Software
4
A
HIS
58
A
HIS
13
13
1_555
A
GLU
83
A
GLU
38
13
1_555
A
TRP
88
A
TRP
43
13
1_555
A
ILE
97
A
ILE
52
13
1_555
A
ILE
100
A
ILE
55
13
1_555
A
GLN
125
A
GLN
80
13
1_555
A
ARG
163
A
ARG
118
13
1_555
A
ALA
168
A
ALA
123
13
1_555
A
TYR
172
A
TYR
127
13
1_555
A
ARG
222
A
ARG
177
13
1_555
A
HOH
522
I
HOH
13
1_555
A
HOH
532
I
HOH
13
1_555
A
HOH
544
I
HOH
13
1_555
A
HIS
58
A
HIS
13
8
1_555
A
GLY
59
A
GLY
14
8
1_555
A
MET
60
A
MET
15
8
1_555
A
GLY
61
A
GLY
16
8
1_555
A
LYS
62
A
LYS
17
8
1_555
A
THR
63
A
THR
18
8
1_555
A
ARG
220
A
ARG
175
8
1_555
A
ARG
222
A
ARG
177
8
1_555
A
HIS
105
A
HIS
60
4
1_555
A
ARG
226
A
ARG
181
4
1_555
A
HOH
577
I
HOH
4
1_555
B
ARG
75
B
ARG
30
4
8_556
B
HIS
58
B
HIS
13
11
1_555
B
GLU
83
B
GLU
38
11
1_555
B
ILE
100
B
ILE
55
11
1_555
B
GLN
125
B
GLN
80
11
1_555
B
MET
128
B
MET
83
11
1_555
B
ARG
163
B
ARG
118
11
1_555
B
ALA
168
B
ALA
123
11
1_555
B
TYR
172
B
TYR
127
11
1_555
B
HOH
535
J
HOH
11
1_555
B
HOH
537
J
HOH
11
1_555
B
HOH
595
J
HOH
11
1_555
B
GLY
59
B
GLY
14
7
1_555
B
MET
60
B
MET
15
7
1_555
B
GLY
61
B
GLY
16
7
1_555
B
LYS
62
B
LYS
17
7
1_555
B
THR
63
B
THR
18
7
1_555
B
ARG
216
B
ARG
171
7
1_555
B
HOH
595
J
HOH
7
1_555
B
LYS
317
B
LYS
272
4
1_555
B
ARG
320
B
ARG
275
4
1_555
B
SER
321
B
SER
276
4
1_555
B
HOH
614
J
HOH
4
1_555
20
C 2 2 21