0.007269
0.000000
0.000468
0.000000
0.020031
0.000000
0.000000
0.000000
0.029267
0.000000
0.000000
0.000000
Eldar, A.
Rozenberg, H.
Diskin-Posner, Y.
Shakked, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
93.680
90.000
137.562
49.923
34.239
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
N
C
N
282
N
C
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
N
Y
297
N
C
Y
298
N
C
Y
299
N
N
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
S
C
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
N
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
S
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
O
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
R
C
N
462
N
O
N
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
N
Y
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
Y
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
N
512
N
O
N
513
N
O
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
N
N
526
S
C
N
527
N
C
N
528
N
O
N
529
N
C
N
530
N
C
N
531
N
C
N
532
N
O
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
sing
Y
299
N
doub
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
Y
475
N
doub
Y
476
N
sing
Y
477
N
sing
N
478
N
sing
Y
479
N
doub
Y
480
N
sing
Y
481
N
sing
N
482
N
sing
Y
483
N
sing
Y
484
N
doub
N
485
N
sing
Y
486
N
doub
N
487
N
sing
Y
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
Y
503
N
doub
Y
504
N
sing
Y
505
N
sing
N
506
N
sing
Y
507
N
doub
N
508
N
sing
Y
509
N
doub
N
510
N
sing
Y
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
doub
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
41
8748
8759
10.1093/nar/gkt630
23863845
Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions.
2013
10.2210/pdb4ibw/pdb
pdb_00004ibw
100
1
TOROIDAL MIRROR
CCD
2008-02-25
ADSC QUANTUM 4
DIAMOND (111), GE(220)
SINGLE WAVELENGTH
M
x-ray
1
0.9330
1.0
ID14-2
ESRF
0.9330
SYNCHROTRON
ESRF BEAMLINE ID14-2
22542.625
Cellular tumor antigen p53
DNA binding domain
R273H, T284R
1
man
polymer
3664.380
DNA (5'-D(*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*G)-3')
1
syn
polymer
65.409
ZINC ION
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
17
syn
non-polymer
18.015
water
335
nat
water
Antigen NY-CO-13, Phosphoprotein p53, Tumor suppressor p53
no
no
SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVV
RRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILT
IITLEDSSGNLLGRNSFEVHVCACPGRDRRREEENLRKKG
SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVV
RRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILT
IITLEDSSGNLLGRNSFEVHVCACPGRDRRREEENLRKKG
A
polypeptide(L)
no
no
(DC)(DG)(DG)(DG)(DC)(DA)(DT)(DG)(DC)(DC)(DC)(DG)
CGGGCATGCCCG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
P53, TP53
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
pET-27-b
1
2.24
45.05
VAPOR DIFFUSION, HANGING DROP
6.1
1:2.4 PROTEIN/DNA RATIO, 14% PEG 3350, 0.14M NH4F, pH 6.1, Vapor diffusion, hanging drop, temperature 293K
293
-3.174
1
19
B
3
B
10
-2.711
B_DG3:DC10_B
1
-8.200
-0.248
0.023
-0.212
-8.803
1
19
B
4
B
9
-1.318
B_DG4:DC9_B
2
-3.868
-0.191
-0.377
-0.165
-3.980
1
19
B
5
B
8
-0.504
B_DC5:DG8_B
3
-3.543
0.173
0.190
-0.136
2.246
1
20
B
6
B
7
4.416
B_DA6:DT7_B
4
-11.183
-0.065
0.122
-0.163
-2.246
1
20
B
7
B
6
4.416
B_DT7:DA6_B
5
-11.183
0.065
0.122
-0.163
3.980
1
19
B
8
B
5
-0.504
B_DG8:DC5_B
6
-3.543
-0.173
0.190
-0.136
8.803
1
19
B
9
B
4
-1.318
B_DC9:DG4_B
7
-3.868
0.191
-0.377
-0.165
3.174
1
19
B
10
B
3
-2.711
B_DC10:DG3_B
8
-8.200
0.248
0.023
-0.212
3.693
36.907
B
B
3
4
0.096
B
B
10
9
3.583
0.061
1.089
-0.091
BB_DG3DG4:DC9DC10_BB
1
4.868
-7.710
36.596
-0.154
-0.984
3.352
35.061
B
B
4
5
4.859
B
B
9
8
3.266
2.915
-1.015
-0.149
BB_DG4DC5:DG8DC9_BB
2
-4.980
8.302
34.597
-0.693
0.924
3.332
41.485
B
B
5
6
2.455
B
B
8
7
3.266
1.737
0.278
1.417
BB_DC5DA6:DT7DG8_BB
3
3.445
-4.870
41.313
1.813
-0.022
3.637
29.336
B
B
6
7
18.814
B
B
7
6
3.674
9.368
0.000
0.471
BB_DA6DT7:DA6DT7_BB
4
0.000
0.000
27.831
-1.387
0.000
3.332
41.485
B
B
7
8
2.455
B
B
6
5
3.266
1.737
-0.278
1.417
BB_DT7DG8:DC5DA6_BB
5
-3.445
4.870
41.313
1.813
0.022
3.352
35.061
B
B
8
9
4.859
B
B
5
4
3.266
2.915
1.015
-0.149
BB_DG8DC9:DG4DC5_BB
6
4.980
-8.302
34.597
-0.693
-0.924
3.693
36.907
B
B
9
10
0.096
B
B
4
3
3.583
0.061
-1.089
-0.091
BB_DC9DC10:DG3DG4_BB
7
-4.868
7.710
36.596
-0.154
0.984
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-08-14
1
1
2013-10-23
1
2
2017-11-15
1
3
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-12-09
REL
REL
ZN
ZINC ION
EDO
1,2-ETHANEDIOL
HOH
water
2AC0
PDB entry 2AC0, chain A
PDB
experimental model
ZN
1
3
ZN
ZN
301
A
EDO
1
4
EDO
EDO
302
A
EDO
2
4
EDO
EDO
303
A
EDO
3
4
EDO
EDO
304
A
EDO
4
4
EDO
EDO
305
A
EDO
5
4
EDO
EDO
306
A
EDO
6
4
EDO
EDO
307
A
EDO
7
4
EDO
EDO
308
A
EDO
8
4
EDO
EDO
309
A
EDO
9
4
EDO
EDO
310
A
EDO
10
4
EDO
EDO
311
A
EDO
11
4
EDO
EDO
312
A
EDO
14
4
EDO
EDO
313
A
EDO
15
4
EDO
EDO
314
A
EDO
17
4
EDO
EDO
315
A
EDO
18
4
EDO
EDO
316
A
EDO
12
4
EDO
EDO
101
B
EDO
13
4
EDO
EDO
102
B
HOH
1
5
HOH
HOH
401
A
HOH
2
5
HOH
HOH
402
A
HOH
3
5
HOH
HOH
403
A
HOH
4
5
HOH
HOH
404
A
HOH
5
5
HOH
HOH
405
A
HOH
6
5
HOH
HOH
406
A
HOH
7
5
HOH
HOH
407
A
HOH
8
5
HOH
HOH
408
A
HOH
9
5
HOH
HOH
409
A
HOH
10
5
HOH
HOH
410
A
HOH
11
5
HOH
HOH
411
A
HOH
13
5
HOH
HOH
412
A
HOH
14
5
HOH
HOH
413
A
HOH
15
5
HOH
HOH
414
A
HOH
16
5
HOH
HOH
415
A
HOH
17
5
HOH
HOH
416
A
HOH
18
5
HOH
HOH
417
A
HOH
20
5
HOH
HOH
418
A
HOH
21
5
HOH
HOH
419
A
HOH
22
5
HOH
HOH
420
A
HOH
23
5
HOH
HOH
421
A
HOH
24
5
HOH
HOH
422
A
HOH
25
5
HOH
HOH
423
A
HOH
26
5
HOH
HOH
424
A
HOH
27
5
HOH
HOH
425
A
HOH
28
5
HOH
HOH
426
A
HOH
29
5
HOH
HOH
427
A
HOH
30
5
HOH
HOH
428
A
HOH
31
5
HOH
HOH
429
A
HOH
32
5
HOH
HOH
430
A
HOH
33
5
HOH
HOH
431
A
HOH
34
5
HOH
HOH
432
A
HOH
35
5
HOH
HOH
433
A
HOH
36
5
HOH
HOH
434
A
HOH
37
5
HOH
HOH
435
A
HOH
38
5
HOH
HOH
436
A
HOH
39
5
HOH
HOH
437
A
HOH
40
5
HOH
HOH
438
A
HOH
41
5
HOH
HOH
439
A
HOH
43
5
HOH
HOH
440
A
HOH
44
5
HOH
HOH
441
A
HOH
45
5
HOH
HOH
442
A
HOH
46
5
HOH
HOH
443
A
HOH
47
5
HOH
HOH
444
A
HOH
48
5
HOH
HOH
445
A
HOH
49
5
HOH
HOH
446
A
HOH
50
5
HOH
HOH
447
A
HOH
51
5
HOH
HOH
448
A
HOH
52
5
HOH
HOH
449
A
HOH
53
5
HOH
HOH
450
A
HOH
54
5
HOH
HOH
451
A
HOH
56
5
HOH
HOH
452
A
HOH
57
5
HOH
HOH
453
A
HOH
58
5
HOH
HOH
454
A
HOH
59
5
HOH
HOH
455
A
HOH
60
5
HOH
HOH
456
A
HOH
61
5
HOH
HOH
457
A
HOH
62
5
HOH
HOH
458
A
HOH
64
5
HOH
HOH
459
A
HOH
65
5
HOH
HOH
460
A
HOH
66
5
HOH
HOH
461
A
HOH
67
5
HOH
HOH
462
A
HOH
68
5
HOH
HOH
463
A
HOH
69
5
HOH
HOH
464
A
HOH
70
5
HOH
HOH
465
A
HOH
72
5
HOH
HOH
466
A
HOH
73
5
HOH
HOH
467
A
HOH
76
5
HOH
HOH
468
A
HOH
78
5
HOH
HOH
469
A
HOH
81
5
HOH
HOH
470
A
HOH
82
5
HOH
HOH
471
A
HOH
83
5
HOH
HOH
472
A
HOH
86
5
HOH
HOH
473
A
HOH
87
5
HOH
HOH
474
A
HOH
89
5
HOH
HOH
475
A
HOH
90
5
HOH
HOH
476
A
HOH
91
5
HOH
HOH
477
A
HOH
92
5
HOH
HOH
478
A
HOH
94
5
HOH
HOH
479
A
HOH
95
5
HOH
HOH
480
A
HOH
96
5
HOH
HOH
481
A
HOH
97
5
HOH
HOH
482
A
HOH
98
5
HOH
HOH
483
A
HOH
99
5
HOH
HOH
484
A
HOH
100
5
HOH
HOH
485
A
HOH
101
5
HOH
HOH
486
A
HOH
102
5
HOH
HOH
487
A
HOH
104
5
HOH
HOH
488
A
HOH
105
5
HOH
HOH
489
A
HOH
106
5
HOH
HOH
490
A
HOH
108
5
HOH
HOH
491
A
HOH
109
5
HOH
HOH
492
A
HOH
110
5
HOH
HOH
493
A
HOH
111
5
HOH
HOH
494
A
HOH
113
5
HOH
HOH
495
A
HOH
114
5
HOH
HOH
496
A
HOH
115
5
HOH
HOH
497
A
HOH
116
5
HOH
HOH
498
A
HOH
118
5
HOH
HOH
499
A
HOH
119
5
HOH
HOH
500
A
HOH
120
5
HOH
HOH
501
A
HOH
121
5
HOH
HOH
502
A
HOH
122
5
HOH
HOH
503
A
HOH
123
5
HOH
HOH
504
A
HOH
125
5
HOH
HOH
505
A
HOH
126
5
HOH
HOH
506
A
HOH
127
5
HOH
HOH
507
A
HOH
128
5
HOH
HOH
508
A
HOH
129
5
HOH
HOH
509
A
HOH
132
5
HOH
HOH
510
A
HOH
134
5
HOH
HOH
511
A
HOH
135
5
HOH
HOH
512
A
HOH
136
5
HOH
HOH
513
A
HOH
137
5
HOH
HOH
514
A
HOH
140
5
HOH
HOH
515
A
HOH
141
5
HOH
HOH
516
A
HOH
142
5
HOH
HOH
517
A
HOH
143
5
HOH
HOH
518
A
HOH
144
5
HOH
HOH
519
A
HOH
145
5
HOH
HOH
520
A
HOH
146
5
HOH
HOH
521
A
HOH
147
5
HOH
HOH
522
A
HOH
148
5
HOH
HOH
523
A
HOH
150
5
HOH
HOH
524
A
HOH
151
5
HOH
HOH
525
A
HOH
152
5
HOH
HOH
526
A
HOH
153
5
HOH
HOH
527
A
HOH
154
5
HOH
HOH
528
A
HOH
155
5
HOH
HOH
529
A
HOH
156
5
HOH
HOH
530
A
HOH
158
5
HOH
HOH
531
A
HOH
159
5
HOH
HOH
532
A
HOH
160
5
HOH
HOH
533
A
HOH
162
5
HOH
HOH
534
A
HOH
164
5
HOH
HOH
535
A
HOH
165
5
HOH
HOH
536
A
HOH
166
5
HOH
HOH
537
A
HOH
167
5
HOH
HOH
538
A
HOH
168
5
HOH
HOH
539
A
HOH
170
5
HOH
HOH
540
A
HOH
171
5
HOH
HOH
541
A
HOH
172
5
HOH
HOH
542
A
HOH
173
5
HOH
HOH
543
A
HOH
174
5
HOH
HOH
544
A
HOH
175
5
HOH
HOH
545
A
HOH
176
5
HOH
HOH
546
A
HOH
177
5
HOH
HOH
547
A
HOH
178
5
HOH
HOH
548
A
HOH
179
5
HOH
HOH
549
A
HOH
180
5
HOH
HOH
550
A
HOH
181
5
HOH
HOH
551
A
HOH
182
5
HOH
HOH
552
A
HOH
183
5
HOH
HOH
553
A
HOH
184
5
HOH
HOH
554
A
HOH
185
5
HOH
HOH
555
A
HOH
186
5
HOH
HOH
556
A
HOH
187
5
HOH
HOH
557
A
HOH
188
5
HOH
HOH
558
A
HOH
189
5
HOH
HOH
559
A
HOH
191
5
HOH
HOH
560
A
HOH
193
5
HOH
HOH
561
A
HOH
195
5
HOH
HOH
562
A
HOH
196
5
HOH
HOH
563
A
HOH
197
5
HOH
HOH
564
A
HOH
198
5
HOH
HOH
565
A
HOH
199
5
HOH
HOH
566
A
HOH
200
5
HOH
HOH
567
A
HOH
202
5
HOH
HOH
568
A
HOH
203
5
HOH
HOH
569
A
HOH
204
5
HOH
HOH
570
A
HOH
205
5
HOH
HOH
571
A
HOH
206
5
HOH
HOH
572
A
HOH
207
5
HOH
HOH
573
A
HOH
208
5
HOH
HOH
574
A
HOH
209
5
HOH
HOH
575
A
HOH
210
5
HOH
HOH
576
A
HOH
211
5
HOH
HOH
577
A
HOH
212
5
HOH
HOH
578
A
HOH
213
5
HOH
HOH
579
A
HOH
214
5
HOH
HOH
580
A
HOH
215
5
HOH
HOH
581
A
HOH
216
5
HOH
HOH
582
A
HOH
218
5
HOH
HOH
583
A
HOH
219
5
HOH
HOH
584
A
HOH
221
5
HOH
HOH
585
A
HOH
222
5
HOH
HOH
586
A
HOH
223
5
HOH
HOH
587
A
HOH
224
5
HOH
HOH
588
A
HOH
225
5
HOH
HOH
589
A
HOH
226
5
HOH
HOH
590
A
HOH
229
5
HOH
HOH
591
A
HOH
230
5
HOH
HOH
592
A
HOH
231
5
HOH
HOH
593
A
HOH
233
5
HOH
HOH
594
A
HOH
234
5
HOH
HOH
595
A
HOH
235
5
HOH
HOH
596
A
HOH
236
5
HOH
HOH
597
A
HOH
238
5
HOH
HOH
598
A
HOH
239
5
HOH
HOH
599
A
HOH
240
5
HOH
HOH
600
A
HOH
241
5
HOH
HOH
601
A
HOH
242
5
HOH
HOH
602
A
HOH
243
5
HOH
HOH
603
A
HOH
244
5
HOH
HOH
604
A
HOH
245
5
HOH
HOH
605
A
HOH
246
5
HOH
HOH
606
A
HOH
247
5
HOH
HOH
607
A
HOH
248
5
HOH
HOH
608
A
HOH
249
5
HOH
HOH
609
A
HOH
251
5
HOH
HOH
610
A
HOH
253
5
HOH
HOH
611
A
HOH
254
5
HOH
HOH
612
A
HOH
255
5
HOH
HOH
613
A
HOH
256
5
HOH
HOH
614
A
HOH
257
5
HOH
HOH
615
A
HOH
258
5
HOH
HOH
616
A
HOH
261
5
HOH
HOH
617
A
HOH
262
5
HOH
HOH
618
A
HOH
263
5
HOH
HOH
619
A
HOH
264
5
HOH
HOH
620
A
HOH
265
5
HOH
HOH
621
A
HOH
266
5
HOH
HOH
622
A
HOH
267
5
HOH
HOH
623
A
HOH
268
5
HOH
HOH
624
A
HOH
269
5
HOH
HOH
625
A
HOH
270
5
HOH
HOH
626
A
HOH
271
5
HOH
HOH
627
A
HOH
272
5
HOH
HOH
628
A
HOH
273
5
HOH
HOH
629
A
HOH
274
5
HOH
HOH
630
A
HOH
275
5
HOH
HOH
631
A
HOH
276
5
HOH
HOH
632
A
HOH
277
5
HOH
HOH
633
A
HOH
278
5
HOH
HOH
634
A
HOH
279
5
HOH
HOH
635
A
HOH
280
5
HOH
HOH
636
A
HOH
281
5
HOH
HOH
637
A
HOH
282
5
HOH
HOH
638
A
HOH
283
5
HOH
HOH
639
A
HOH
284
5
HOH
HOH
640
A
HOH
285
5
HOH
HOH
641
A
HOH
286
5
HOH
HOH
642
A
HOH
288
5
HOH
HOH
643
A
HOH
289
5
HOH
HOH
644
A
HOH
290
5
HOH
HOH
645
A
HOH
291
5
HOH
HOH
646
A
HOH
292
5
HOH
HOH
647
A
HOH
293
5
HOH
HOH
648
A
HOH
294
5
HOH
HOH
649
A
HOH
295
5
HOH
HOH
650
A
HOH
296
5
HOH
HOH
651
A
HOH
297
5
HOH
HOH
652
A
HOH
298
5
HOH
HOH
653
A
HOH
299
5
HOH
HOH
654
A
HOH
300
5
HOH
HOH
655
A
HOH
301
5
HOH
HOH
656
A
HOH
302
5
HOH
HOH
657
A
HOH
303
5
HOH
HOH
658
A
HOH
304
5
HOH
HOH
659
A
HOH
305
5
HOH
HOH
660
A
HOH
306
5
HOH
HOH
661
A
HOH
307
5
HOH
HOH
662
A
HOH
308
5
HOH
HOH
663
A
HOH
309
5
HOH
HOH
664
A
HOH
310
5
HOH
HOH
665
A
HOH
311
5
HOH
HOH
666
A
HOH
312
5
HOH
HOH
667
A
HOH
313
5
HOH
HOH
668
A
HOH
314
5
HOH
HOH
669
A
HOH
315
5
HOH
HOH
670
A
HOH
316
5
HOH
HOH
671
A
HOH
317
5
HOH
HOH
672
A
HOH
319
5
HOH
HOH
673
A
HOH
320
5
HOH
HOH
674
A
HOH
321
5
HOH
HOH
675
A
HOH
324
5
HOH
HOH
676
A
HOH
325
5
HOH
HOH
677
A
HOH
326
5
HOH
HOH
678
A
HOH
327
5
HOH
HOH
679
A
HOH
328
5
HOH
HOH
680
A
HOH
329
5
HOH
HOH
681
A
HOH
330
5
HOH
HOH
682
A
HOH
331
5
HOH
HOH
683
A
HOH
332
5
HOH
HOH
684
A
HOH
333
5
HOH
HOH
685
A
HOH
334
5
HOH
HOH
686
A
HOH
335
5
HOH
HOH
687
A
HOH
227
5
HOH
HOH
688
A
HOH
318
5
HOH
HOH
689
A
HOH
12
5
HOH
HOH
201
B
HOH
19
5
HOH
HOH
202
B
HOH
42
5
HOH
HOH
203
B
HOH
55
5
HOH
HOH
204
B
HOH
63
5
HOH
HOH
205
B
HOH
71
5
HOH
HOH
206
B
HOH
74
5
HOH
HOH
207
B
HOH
75
5
HOH
HOH
208
B
HOH
77
5
HOH
HOH
209
B
HOH
79
5
HOH
HOH
210
B
HOH
80
5
HOH
HOH
211
B
HOH
84
5
HOH
HOH
212
B
HOH
85
5
HOH
HOH
213
B
HOH
88
5
HOH
HOH
214
B
HOH
93
5
HOH
HOH
215
B
HOH
103
5
HOH
HOH
216
B
HOH
107
5
HOH
HOH
217
B
HOH
112
5
HOH
HOH
218
B
HOH
117
5
HOH
HOH
219
B
HOH
124
5
HOH
HOH
220
B
HOH
130
5
HOH
HOH
221
B
HOH
131
5
HOH
HOH
222
B
HOH
133
5
HOH
HOH
223
B
HOH
138
5
HOH
HOH
224
B
HOH
139
5
HOH
HOH
225
B
HOH
149
5
HOH
HOH
226
B
HOH
157
5
HOH
HOH
227
B
HOH
161
5
HOH
HOH
228
B
HOH
163
5
HOH
HOH
229
B
HOH
169
5
HOH
HOH
230
B
HOH
190
5
HOH
HOH
231
B
HOH
192
5
HOH
HOH
232
B
HOH
194
5
HOH
HOH
233
B
HOH
201
5
HOH
HOH
234
B
HOH
217
5
HOH
HOH
235
B
HOH
220
5
HOH
HOH
236
B
HOH
228
5
HOH
HOH
237
B
HOH
232
5
HOH
HOH
238
B
HOH
237
5
HOH
HOH
239
B
HOH
250
5
HOH
HOH
240
B
HOH
252
5
HOH
HOH
241
B
HOH
259
5
HOH
HOH
242
B
HOH
260
5
HOH
HOH
243
B
HOH
287
5
HOH
HOH
244
B
HOH
322
5
HOH
HOH
245
B
HOH
323
5
HOH
HOH
246
B
SER
94
n
1
SER
94
A
SER
95
n
2
SER
95
A
SER
96
n
3
SER
96
A
VAL
97
n
4
VAL
97
A
PRO
98
n
5
PRO
98
A
SER
99
n
6
SER
99
A
GLN
100
n
7
GLN
100
A
LYS
101
n
8
LYS
101
A
THR
102
n
9
THR
102
A
TYR
103
n
10
TYR
103
A
GLN
104
n
11
GLN
104
A
GLY
105
n
12
GLY
105
A
SER
106
n
13
SER
106
A
TYR
107
n
14
TYR
107
A
GLY
108
n
15
GLY
108
A
PHE
109
n
16
PHE
109
A
ARG
110
n
17
ARG
110
A
LEU
111
n
18
LEU
111
A
GLY
112
n
19
GLY
112
A
PHE
113
n
20
PHE
113
A
LEU
114
n
21
LEU
114
A
HIS
115
n
22
HIS
115
A
SER
116
n
23
SER
116
A
GLY
117
n
24
GLY
117
A
THR
118
n
25
THR
118
A
ALA
119
n
26
ALA
119
A
LYS
120
n
27
LYS
120
A
SER
121
n
28
SER
121
A
VAL
122
n
29
VAL
122
A
THR
123
n
30
THR
123
A
CYS
124
n
31
CYS
124
A
THR
125
n
32
THR
125
A
TYR
126
n
33
TYR
126
A
SER
127
n
34
SER
127
A
PRO
128
n
35
PRO
128
A
ALA
129
n
36
ALA
129
A
LEU
130
n
37
LEU
130
A
ASN
131
n
38
ASN
131
A
LYS
132
n
39
LYS
132
A
MET
133
n
40
MET
133
A
PHE
134
n
41
PHE
134
A
CYS
135
n
42
CYS
135
A
GLN
136
n
43
GLN
136
A
LEU
137
n
44
LEU
137
A
ALA
138
n
45
ALA
138
A
LYS
139
n
46
LYS
139
A
THR
140
n
47
THR
140
A
CYS
141
n
48
CYS
141
A
PRO
142
n
49
PRO
142
A
VAL
143
n
50
VAL
143
A
GLN
144
n
51
GLN
144
A
LEU
145
n
52
LEU
145
A
TRP
146
n
53
TRP
146
A
VAL
147
n
54
VAL
147
A
ASP
148
n
55
ASP
148
A
SER
149
n
56
SER
149
A
THR
150
n
57
THR
150
A
PRO
151
n
58
PRO
151
A
PRO
152
n
59
PRO
152
A
PRO
153
n
60
PRO
153
A
GLY
154
n
61
GLY
154
A
THR
155
n
62
THR
155
A
ARG
156
n
63
ARG
156
A
VAL
157
n
64
VAL
157
A
ARG
158
n
65
ARG
158
A
ALA
159
n
66
ALA
159
A
MET
160
n
67
MET
160
A
ALA
161
n
68
ALA
161
A
ILE
162
n
69
ILE
162
A
TYR
163
n
70
TYR
163
A
LYS
164
n
71
LYS
164
A
GLN
165
n
72
GLN
165
A
SER
166
n
73
SER
166
A
GLN
167
n
74
GLN
167
A
HIS
168
n
75
HIS
168
A
MET
169
n
76
MET
169
A
THR
170
n
77
THR
170
A
GLU
171
n
78
GLU
171
A
VAL
172
n
79
VAL
172
A
VAL
173
n
80
VAL
173
A
ARG
174
n
81
ARG
174
A
ARG
175
n
82
ARG
175
A
CYS
176
n
83
CYS
176
A
PRO
177
n
84
PRO
177
A
HIS
178
n
85
HIS
178
A
HIS
179
n
86
HIS
179
A
GLU
180
n
87
GLU
180
A
ARG
181
n
88
ARG
181
A
CYS
182
n
89
CYS
182
A
n
90
183
A
n
91
184
A
n
92
185
A
ASP
186
n
93
ASP
186
A
GLY
187
n
94
GLY
187
A
LEU
188
n
95
LEU
188
A
ALA
189
n
96
ALA
189
A
PRO
190
n
97
PRO
190
A
PRO
191
n
98
PRO
191
A
GLN
192
n
99
GLN
192
A
HIS
193
n
100
HIS
193
A
LEU
194
n
101
LEU
194
A
ILE
195
n
102
ILE
195
A
ARG
196
n
103
ARG
196
A
VAL
197
n
104
VAL
197
A
GLU
198
n
105
GLU
198
A
GLY
199
n
106
GLY
199
A
ASN
200
n
107
ASN
200
A
LEU
201
n
108
LEU
201
A
ARG
202
n
109
ARG
202
A
VAL
203
n
110
VAL
203
A
GLU
204
n
111
GLU
204
A
TYR
205
n
112
TYR
205
A
LEU
206
n
113
LEU
206
A
ASP
207
n
114
ASP
207
A
ASP
208
n
115
ASP
208
A
ARG
209
n
116
ARG
209
A
ASN
210
n
117
ASN
210
A
THR
211
n
118
THR
211
A
PHE
212
n
119
PHE
212
A
ARG
213
n
120
ARG
213
A
HIS
214
n
121
HIS
214
A
SER
215
n
122
SER
215
A
VAL
216
n
123
VAL
216
A
VAL
217
n
124
VAL
217
A
VAL
218
n
125
VAL
218
A
PRO
219
n
126
PRO
219
A
TYR
220
n
127
TYR
220
A
GLU
221
n
128
GLU
221
A
PRO
222
n
129
PRO
222
A
PRO
223
n
130
PRO
223
A
GLU
224
n
131
GLU
224
A
VAL
225
n
132
VAL
225
A
GLY
226
n
133
GLY
226
A
SER
227
n
134
SER
227
A
ASP
228
n
135
ASP
228
A
CYS
229
n
136
CYS
229
A
THR
230
n
137
THR
230
A
THR
231
n
138
THR
231
A
ILE
232
n
139
ILE
232
A
HIS
233
n
140
HIS
233
A
TYR
234
n
141
TYR
234
A
ASN
235
n
142
ASN
235
A
TYR
236
n
143
TYR
236
A
MET
237
n
144
MET
237
A
CYS
238
n
145
CYS
238
A
ASN
239
n
146
ASN
239
A
SER
240
n
147
SER
240
A
SER
241
n
148
SER
241
A
CYS
242
n
149
CYS
242
A
MET
243
n
150
MET
243
A
GLY
244
n
151
GLY
244
A
GLY
245
n
152
GLY
245
A
MET
246
n
153
MET
246
A
ASN
247
n
154
ASN
247
A
ARG
248
n
155
ARG
248
A
ARG
249
n
156
ARG
249
A
PRO
250
n
157
PRO
250
A
ILE
251
n
158
ILE
251
A
LEU
252
n
159
LEU
252
A
THR
253
n
160
THR
253
A
ILE
254
n
161
ILE
254
A
ILE
255
n
162
ILE
255
A
THR
256
n
163
THR
256
A
LEU
257
n
164
LEU
257
A
GLU
258
n
165
GLU
258
A
ASP
259
n
166
ASP
259
A
SER
260
n
167
SER
260
A
SER
261
n
168
SER
261
A
GLY
262
n
169
GLY
262
A
ASN
263
n
170
ASN
263
A
LEU
264
n
171
LEU
264
A
LEU
265
n
172
LEU
265
A
GLY
266
n
173
GLY
266
A
ARG
267
n
174
ARG
267
A
ASN
268
n
175
ASN
268
A
SER
269
n
176
SER
269
A
PHE
270
n
177
PHE
270
A
GLU
271
n
178
GLU
271
A
VAL
272
n
179
VAL
272
A
HIS
273
n
180
HIS
273
A
VAL
274
n
181
VAL
274
A
CYS
275
n
182
CYS
275
A
ALA
276
n
183
ALA
276
A
CYS
277
n
184
CYS
277
A
PRO
278
n
185
PRO
278
A
GLY
279
n
186
GLY
279
A
ARG
280
n
187
ARG
280
A
ASP
281
n
188
ASP
281
A
ARG
282
n
189
ARG
282
A
ARG
283
n
190
ARG
283
A
ARG
284
n
191
ARG
284
A
GLU
285
n
192
GLU
285
A
GLU
286
n
193
GLU
286
A
GLU
287
n
194
GLU
287
A
ASN
288
n
195
ASN
288
A
LEU
289
n
196
LEU
289
A
ARG
290
n
197
ARG
290
A
LYS
291
n
198
LYS
291
A
LYS
292
n
199
LYS
292
A
GLY
293
n
200
GLY
293
A
DC
1
n
1
DC
1
B
DG
2
n
2
DG
2
B
DG
3
n
3
DG
3
B
DG
4
n
4
DG
4
B
DC
5
n
5
DC
5
B
DA
6
n
6
DA
6
B
DT
7
n
7
DT
7
B
DG
8
n
8
DG
8
B
DC
9
n
9
DC
9
B
DC
10
n
10
DC
10
B
DC
11
n
11
DC
11
B
DG
12
n
12
DG
12
B
1.2200
0.2121
-0.4756
0.8229
-0.2683
0.6534
-0.0352
0.2261
0.2002
-0.2145
0.0929
0.0997
-0.0499
0.0786
-0.0151
0.0954
0.0006
-0.0267
0.1466
-0.0117
0.0932
refined
-30.0363
-2.7210
-21.4410
X-RAY DIFFRACTION
4.5634
3.5796
1.4837
2.8387
1.0114
1.0854
0.1814
-0.5826
0.5629
0.2076
-0.3624
0.3067
0.0340
-0.0725
0.1498
0.0991
-0.0583
0.0087
0.1616
-0.0399
0.1375
refined
-17.5059
11.8097
-3.7556
X-RAY DIFFRACTION
1.8534
1.3182
-0.3942
1.8860
-0.3611
0.0505
0.0163
-0.1509
0.0775
0.0040
-0.0484
0.0369
0.0016
0.0105
0.0312
0.0705
0.0010
-0.0066
0.0735
-0.0221
0.0305
refined
-24.5154
2.9743
-8.8479
X-RAY DIFFRACTION
2.9608
0.1778
-0.6527
0.9086
0.4923
1.5501
-0.0751
0.1495
-0.1215
-0.1047
-0.0237
-0.0522
0.0072
0.0411
0.0682
0.0817
-0.0042
-0.0049
0.0257
-0.0116
0.0464
refined
-15.9853
-4.2583
-21.9719
X-RAY DIFFRACTION
3.6462
2.3322
-0.3622
4.1306
-0.1240
2.6364
-0.0006
-0.4429
-0.7820
0.2272
0.0422
-0.3165
0.1060
0.3343
0.0462
0.1046
0.0353
0.0003
0.1375
0.0419
0.1316
refined
-6.6251
-10.1728
-11.3090
X-RAY DIFFRACTION
1.3282
0.3279
0.0833
0.2120
0.4544
1.7653
0.3848
-0.5505
-0.2523
0.3822
-0.0968
-0.1126
0.1689
-0.0030
0.0814
0.1418
-0.0789
0.0014
0.2349
0.0881
-0.0161
refined
-20.0431
-10.5871
-4.5239
X-RAY DIFFRACTION
0.5542
0.0311
0.9295
2.5820
0.9807
1.9396
0.0504
0.0078
-0.1112
-0.0562
0.0719
0.0395
0.4410
-0.1483
-0.0385
0.1037
-0.0197
0.0032
0.0696
0.0015
0.0760
refined
-18.9220
-16.1262
-19.8686
X-RAY DIFFRACTION
0.8287
0.2897
0.1066
1.3671
-0.2311
1.0787
-0.0062
-0.4406
0.0907
0.2826
-0.0345
0.1932
-0.0415
-0.0267
0.0111
0.1170
-0.0073
0.0293
0.1412
-0.0311
0.0704
refined
-30.9701
-5.8228
-3.9116
X-RAY DIFFRACTION
1.9112
0.5817
0.0363
1.0939
0.0096
0.4934
-0.0320
0.0140
0.0484
-0.0034
0.0232
0.0500
0.0143
0.0184
0.0189
0.0638
-0.0026
-0.0020
0.0406
0.0027
0.0367
refined
-19.0816
-1.0869
-15.1715
X-RAY DIFFRACTION
5.2517
-2.0024
5.8224
3.9380
-4.6253
8.5898
-0.1046
0.2742
0.3597
0.0446
-0.1034
-0.0465
-0.1829
0.1992
0.2039
0.0754
-0.0118
0.0039
0.0816
-0.0090
0.1288
refined
-14.9112
18.6759
-15.7868
X-RAY DIFFRACTION
2.5212
0.3651
-1.7513
2.4322
-0.0449
1.5742
0.1100
0.0142
0.1323
0.0807
0.1311
-0.0062
-0.1337
0.0160
-0.1109
0.0630
0.0026
-0.0165
0.0707
-0.0275
0.0994
refined
2.1286
14.8094
-18.3892
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
CHAIN A AND (RESID 94:112 )
A
0
A
0
X-RAY DIFFRACTION
2
CHAIN A AND (RESID 113:123 )
A
0
A
0
X-RAY DIFFRACTION
3
CHAIN A AND (RESID 124:155 )
A
0
A
0
X-RAY DIFFRACTION
4
CHAIN A AND (RESID 156:176 )
A
0
A
0
X-RAY DIFFRACTION
5
CHAIN A AND (RESID 177:194 )
A
0
A
0
X-RAY DIFFRACTION
6
CHAIN A AND (RESID 195:203 )
A
0
A
0
X-RAY DIFFRACTION
7
CHAIN A AND (RESID 204:213 )
A
0
A
0
X-RAY DIFFRACTION
8
CHAIN A AND (RESID 214:229 )
A
0
A
0
X-RAY DIFFRACTION
9
CHAIN A AND (RESID 230:277 )
A
0
A
0
X-RAY DIFFRACTION
10
CHAIN A AND (RESID 278:293 )
B
0
B
0
X-RAY DIFFRACTION
11
CHAIN B AND (RESID 1:12 )
author_defined_assembly
4
tetrameric
A
CYS
176
A
SG
CYS
83
1_555
A
ZN
301
C
ZN
ZN
1_555
A
HIS
179
A
ND1
HIS
86
1_555
103.4
A
CYS
176
A
SG
CYS
83
1_555
A
ZN
301
C
ZN
ZN
1_555
A
CYS
238
A
SG
CYS
145
1_555
107.8
A
HIS
179
A
ND1
HIS
86
1_555
A
ZN
301
C
ZN
ZN
1_555
A
CYS
238
A
SG
CYS
145
1_555
112.7
A
CYS
176
A
SG
CYS
83
1_555
A
ZN
301
C
ZN
ZN
1_555
A
CYS
242
A
SG
CYS
149
1_555
116.5
A
HIS
179
A
ND1
HIS
86
1_555
A
ZN
301
C
ZN
ZN
1_555
A
CYS
242
A
SG
CYS
149
1_555
101.8
A
CYS
238
A
SG
CYS
145
1_555
A
ZN
301
C
ZN
ZN
1_555
A
CYS
242
A
SG
CYS
149
1_555
114.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_554
-x,y,-z-1
crystal symmetry operation
2.1975948141
0.0000000000
-34.1684020410
A
N
GLY
112
A
N
GLY
19
A
O
GLN
144
A
O
GLN
51
A
N
LEU
145
A
N
LEU
52
A
O
THR
230
A
O
THR
137
A
O
HIS
233
A
O
HIS
140
A
N
GLU
198
A
N
GLU
105
A
N
THR
125
A
N
THR
32
A
O
PHE
134
A
O
PHE
41
A
N
MET
133
A
N
MET
40
A
O
GLU
271
A
O
GLU
178
A
O
PHE
270
A
O
PHE
177
A
N
THR
253
A
N
THR
160
A
O
GLU
258
A
O
GLU
165
A
N
ARG
156
A
N
ARG
63
A
N
VAL
157
A
N
VAL
64
A
O
VAL
218
A
O
VAL
125
A
O
VAL
217
A
O
VAL
124
A
N
GLU
204
A
N
GLU
111
1
A
CD1
LEU
188
A
CD1
LEU
95
1
Y
1
A
CD2
LEU
188
A
CD2
LEU
95
1
Y
1
A
NE
ARG
202
A
NE
ARG
109
1
Y
1
A
CZ
ARG
202
A
CZ
ARG
109
1
Y
1
A
NH1
ARG
202
A
NH1
ARG
109
1
Y
1
A
NH2
ARG
202
A
NH2
ARG
109
1
Y
1
A
CD
GLU
287
A
CD
GLU
194
1
Y
1
A
OE1
GLU
287
A
OE1
GLU
194
1
Y
1
A
OE2
GLU
287
A
OE2
GLU
194
1
Y
1
B
C5'
DG
12
B
C5'
DG
12
1
Y
1
B
C4'
DG
12
B
C4'
DG
12
1
Y
1
B
O4'
DG
12
B
O4'
DG
12
1
Y
1
B
C3'
DG
12
B
C3'
DG
12
1
Y
1
B
O3'
DG
12
B
O3'
DG
12
1
Y
1
B
C2'
DG
12
B
C2'
DG
12
1
Y
1
B
C1'
DG
12
B
C1'
DG
12
1
Y
1
B
N9
DG
12
B
N9
DG
12
1
Y
1
B
C8
DG
12
B
C8
DG
12
1
Y
1
B
N7
DG
12
B
N7
DG
12
1
Y
1
B
C5
DG
12
B
C5
DG
12
1
Y
1
B
C6
DG
12
B
C6
DG
12
1
Y
1
B
O6
DG
12
B
O6
DG
12
1
Y
1
B
N1
DG
12
B
N1
DG
12
1
Y
1
B
C2
DG
12
B
C2
DG
12
1
Y
1
B
N2
DG
12
B
N2
DG
12
1
Y
1
B
N3
DG
12
B
N3
DG
12
1
Y
1
B
C4
DG
12
B
C4
DG
12
1
Y
1
A
SER
183
A
SER
90
1
Y
1
A
ASP
184
A
ASP
91
1
Y
1
A
SER
185
A
SER
92
1
Y
1
A
A
O2
O
EDO
HOH
311
655
2.17
1
3.27
0.50
106.80
110.07
B
B
B
O4'
C1'
C2'
DC
DC
DC
1
1
1
N
1
3.26
0.30
108.30
111.56
B
B
B
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
-6.47
0.70
108.00
101.53
B
B
B
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
A
LYS
292
-146.75
13.86
69.220
16.1195
2.160
0.1876
0.1417
0.1441
1.7910
34.3200
1114
21923
21923
5.0800
99.8400
1.000
0.190
0.8942
0.1700
RANDOM
1
THROUGHOUT
1.360
0
MOLECULAR REPLACEMENT
17.7000
0.9000
1.1100
PDB entry 2AC0, chain A
ML
FLAT BULK SOLVENT MODEL
1.7910
34.3200
335
2172
69
225
1543
0.006
2009
1.146
2742
0.078
290
0.005
324
17.027
792
0.2389
0.1778
1.8722
147
2527
2674
8
99.0000
0.2136
0.1607
1.9709
118
2612
2730
8
100.0000
0.2132
0.1485
2.0943
136
2572
2708
8
100.0000
0.1852
0.1398
2.2560
134
2621
2755
8
100.0000
0.2019
0.1463
2.4830
147
2583
2730
8
100.0000
0.1930
0.1446
2.8421
135
2616
2751
8
100.0000
0.1889
0.1283
3.5802
127
2630
2757
8
100.0000
0.1550
0.1316
34.3259
170
2648
2818
8
100.0000
1.790
40.000
4IBW
21929
0
0
0.117
1.065
1
6.700
7.400
100.000
0.536
1.790
1.820
1072
0.899
1
7.200
100.000
0.525
1.820
1.850
1068
0.960
1
7.200
100.000
0.450
1.850
1.890
1099
0.986
1
7.200
100.000
0.400
1.890
1.930
1095
1.038
1
7.300
100.000
0.333
1.930
1.970
1097
1.066
1
7.300
100.000
0.304
1.970
2.020
1120
1.087
1
7.400
100.000
0.260
2.020
2.070
1057
1.074
1
7.400
100.000
0.239
2.070
2.120
1075
1.156
1
7.400
100.000
0.209
2.120
2.180
1098
1.101
1
7.500
100.000
0.182
2.180
2.260
1103
1.135
1
7.500
100.000
0.166
2.260
2.340
1072
1.101
1
7.500
100.000
0.157
2.340
2.430
1114
1.104
1
7.500
100.000
0.139
2.430
2.540
1089
1.171
1
7.500
100.000
0.125
2.540
2.670
1094
1.148
1
7.500
100.000
0.106
2.670
2.840
1113
1.114
1
7.500
100.000
0.084
2.840
3.060
1090
1.061
1
7.500
100.000
0.062
3.060
3.370
1097
1.034
1
7.400
100.000
0.050
3.370
3.860
1118
1.014
1
7.400
100.000
0.047
3.860
4.860
1115
1.034
1
7.200
100.000
0.047
4.860
40.000
1143
0.995
1
6.900
100.000
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.1_1168
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
DNA
data reduction
HKL-2000
data scaling
HKL-2000
Human p53 core domain with hot spot mutation R273H and second-site suppressor mutation T284R in sequence-specific complex with DNA
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
GLN
165
A
GLN
72
HELX_P
A
MET
169
A
MET
76
5
1
5
A
CYS
176
A
CYS
83
HELX_P
A
ARG
181
A
ARG
88
1
2
6
A
CYS
277
A
CYS
184
HELX_P
A
GLY
293
A
GLY
200
1
3
17
metalc
2.311
A
CYS
176
A
SG
CYS
83
1_555
A
ZN
301
C
ZN
ZN
1_555
metalc
2.065
A
HIS
179
A
ND1
HIS
86
1_555
A
ZN
301
C
ZN
ZN
1_555
metalc
2.347
A
CYS
238
A
SG
CYS
145
1_555
A
ZN
301
C
ZN
ZN
1_555
metalc
2.346
A
CYS
242
A
SG
CYS
149
1_555
A
ZN
301
C
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DG
3
B
N1
DG
3
1_555
B
DC
10
B
N3
DC
10
2_554
hydrog
WATSON-CRICK
B
DG
3
B
N2
DG
3
1_555
B
DC
10
B
O2
DC
10
2_554
hydrog
WATSON-CRICK
B
DG
3
B
O6
DG
3
1_555
B
DC
10
B
N4
DC
10
2_554
hydrog
WATSON-CRICK
B
DG
4
B
N1
DG
4
1_555
B
DC
9
B
N3
DC
9
2_554
hydrog
WATSON-CRICK
B
DG
4
B
N2
DG
4
1_555
B
DC
9
B
O2
DC
9
2_554
hydrog
WATSON-CRICK
B
DG
4
B
O6
DG
4
1_555
B
DC
9
B
N4
DC
9
2_554
hydrog
WATSON-CRICK
B
DC
5
B
N3
DC
5
1_555
B
DG
8
B
N1
DG
8
2_554
hydrog
WATSON-CRICK
B
DC
5
B
N4
DC
5
1_555
B
DG
8
B
O6
DG
8
2_554
hydrog
WATSON-CRICK
B
DC
5
B
O2
DC
5
1_555
B
DG
8
B
N2
DG
8
2_554
hydrog
WATSON-CRICK
B
DA
6
B
N1
DA
6
1_555
B
DT
7
B
N3
DT
7
2_554
hydrog
WATSON-CRICK
B
DA
6
B
N6
DA
6
1_555
B
DT
7
B
O4
DT
7
2_554
hydrog
WATSON-CRICK
B
DT
7
B
N3
DT
7
1_555
B
DA
6
B
N1
DA
6
2_554
hydrog
WATSON-CRICK
B
DT
7
B
O4
DT
7
1_555
B
DA
6
B
N6
DA
6
2_554
hydrog
WATSON-CRICK
B
DG
8
B
N1
DG
8
1_555
B
DC
5
B
N3
DC
5
2_554
hydrog
WATSON-CRICK
B
DG
8
B
N2
DG
8
1_555
B
DC
5
B
O2
DC
5
2_554
hydrog
WATSON-CRICK
B
DG
8
B
O6
DG
8
1_555
B
DC
5
B
N4
DC
5
2_554
hydrog
WATSON-CRICK
B
DC
9
B
N3
DC
9
1_555
B
DG
4
B
N1
DG
4
2_554
hydrog
WATSON-CRICK
B
DC
9
B
N4
DC
9
1_555
B
DG
4
B
O6
DG
4
2_554
hydrog
WATSON-CRICK
B
DC
9
B
O2
DC
9
1_555
B
DG
4
B
N2
DG
4
2_554
hydrog
WATSON-CRICK
B
DC
10
B
N3
DC
10
1_555
B
DG
3
B
N1
DG
3
2_554
hydrog
WATSON-CRICK
B
DC
10
B
N4
DC
10
1_555
B
DG
3
B
O6
DG
3
2_554
hydrog
WATSON-CRICK
B
DC
10
B
O2
DC
10
1_555
B
DG
3
B
N2
DG
3
2_554
DNA BINDING PROTEIN/DNA
METAL-BINDING, LOOP-SHEET-HELIX MOTIF, TRANSCRIPTION, ACTIVATOR, ANTI-ONCOGENE, APOPTOSIS, CELL CYCLE, DISEASE MUTATION, RESCUE MUTATION, TUMOR SUPPRESSOR, DNA BINDING PROTEIN-DNA complex
P53_HUMAN
UNP
1
94
P04637
SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVV
RRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILT
IITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKG
4IBW
PDB
2
4IBW
94
293
4IBW
94
293
P04637
A
1
1
200
1
12
4IBW
1
12
4IBW
B
2
1
12
1
ARG
engineered mutation
HIS
273
4IBW
A
P04637
UNP
273
180
1
THR
engineered mutation
ARG
284
4IBW
A
P04637
UNP
284
191
4
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
110
A
ARG
17
A
GLY
112
A
GLY
19
A
CYS
141
A
CYS
48
A
TRP
146
A
TRP
53
A
THR
230
A
THR
137
A
TYR
236
A
TYR
143
A
ILE
195
A
ILE
102
A
GLU
198
A
GLU
105
A
CYS
124
A
CYS
31
A
SER
127
A
SER
34
A
LYS
132
A
LYS
39
A
CYS
135
A
CYS
42
A
LEU
264
A
LEU
171
A
VAL
274
A
VAL
181
A
ILE
251
A
ILE
158
A
GLU
258
A
GLU
165
A
ARG
156
A
ARG
63
A
TYR
163
A
TYR
70
A
HIS
214
A
HIS
121
A
PRO
219
A
PRO
126
A
GLU
204
A
GLU
111
A
ASP
207
A
ASP
114
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
4
BINDING SITE FOR RESIDUE EDO A 302
A
EDO
302
Software
4
BINDING SITE FOR RESIDUE EDO A 303
A
EDO
303
Software
9
BINDING SITE FOR RESIDUE EDO A 304
A
EDO
304
Software
5
BINDING SITE FOR RESIDUE EDO A 305
A
EDO
305
Software
5
BINDING SITE FOR RESIDUE EDO A 306
A
EDO
306
Software
10
BINDING SITE FOR RESIDUE EDO A 307
A
EDO
307
Software
6
BINDING SITE FOR RESIDUE EDO A 308
A
EDO
308
Software
10
BINDING SITE FOR RESIDUE EDO A 309
A
EDO
309
Software
8
BINDING SITE FOR RESIDUE EDO A 310
A
EDO
310
Software
4
BINDING SITE FOR RESIDUE EDO A 311
A
EDO
311
Software
7
BINDING SITE FOR RESIDUE EDO A 312
A
EDO
312
Software
4
BINDING SITE FOR RESIDUE EDO A 313
A
EDO
313
Software
8
BINDING SITE FOR RESIDUE EDO A 314
A
EDO
314
Software
7
BINDING SITE FOR RESIDUE EDO A 315
A
EDO
315
Software
7
BINDING SITE FOR RESIDUE EDO A 316
A
EDO
316
Software
3
BINDING SITE FOR RESIDUE EDO B 101
B
EDO
101
Software
5
BINDING SITE FOR RESIDUE EDO B 102
B
EDO
102
Software
7
A
CYS
176
A
CYS
83
4
1_555
A
HIS
179
A
HIS
86
4
1_555
A
CYS
238
A
CYS
145
4
1_555
A
CYS
242
A
CYS
149
4
1_555
A
SER
95
A
SER
2
4
1_555
A
THR
231
A
THR
138
4
1_554
A
HIS
233
A
HIS
140
4
1_554
A
HOH
659
U
HOH
4
1_555
A
ARG
110
A
ARG
17
9
4_444
A
ASP
148
A
ASP
55
9
4_444
A
ASP
208
A
ASP
115
9
1_555
A
ASN
210
A
ASN
117
9
1_555
A
EDO
306
H
EDO
9
4_444
A
HOH
465
U
HOH
9
1_555
A
HOH
559
U
HOH
9
1_555
A
HOH
658
U
HOH
9
4_444
A
HOH
683
U
HOH
9
1_555
A
GLU
224
A
GLU
131
5
1_554
A
VAL
225
A
VAL
132
5
1_554
A
HOH
518
U
HOH
5
1_555
A
HOH
633
U
HOH
5
1_554
A
HOH
673
U
HOH
5
1_555
A
ARG
110
A
ARG
17
5
1_555
A
LEU
111
A
LEU
18
5
1_555
A
TRP
146
A
TRP
53
5
1_555
A
HOH
555
U
HOH
5
1_555
A
HOH
607
U
HOH
5
1_555
A
ARG
110
A
ARG
17
10
1_555
A
TRP
146
A
TRP
53
10
1_555
A
VAL
147
A
VAL
54
10
1_555
A
ASP
148
A
ASP
55
10
1_555
A
ASP
228
A
ASP
135
10
1_555
A
EDO
303
E
EDO
10
4_454
A
HOH
456
U
HOH
10
1_555
A
HOH
575
U
HOH
10
1_555
A
HOH
658
U
HOH
10
1_555
A
HOH
686
U
HOH
10
1_555
A
LEU
114
A
LEU
21
6
1_555
A
SER
166
A
SER
73
6
1_556
A
MET
169
A
MET
76
6
1_556
A
HIS
233
A
HIS
140
6
1_555
A
HOH
498
U
HOH
6
1_555
A
HOH
536
U
HOH
6
1_555
A
PHE
113
A
PHE
20
10
1_555
A
LEU
114
A
LEU
21
10
1_555
A
HIS
115
A
HIS
22
10
1_555
A
TYR
126
A
TYR
33
10
1_555
A
PRO
128
A
PRO
35
10
1_555
A
ARG
282
A
ARG
189
10
1_555
A
HOH
466
U
HOH
10
1_555
A
HOH
477
U
HOH
10
1_555
A
HOH
532
U
HOH
10
1_555
A
HOH
622
U
HOH
10
1_555
A
LYS
132
A
LYS
39
8
1_555
A
SER
240
A
SER
147
8
1_555
A
ARG
248
A
ARG
155
8
1_555
A
PRO
250
A
PRO
157
8
1_555
A
GLU
271
A
GLU
178
8
1_555
A
VAL
272
A
VAL
179
8
1_555
A
HIS
273
A
HIS
180
8
1_555
A
HOH
507
U
HOH
8
1_555
A
ASP
186
A
ASP
93
4
1_555
A
ARG
196
A
ARG
103
4
1_555
A
ASN
235
A
ASN
142
4
1_555
A
HOH
669
U
HOH
4
1_555
A
ALA
138
A
ALA
45
7
1_555
A
LYS
139
A
LYS
46
7
1_555
A
THR
140
A
THR
47
7
1_555
A
GLN
167
A
GLN
74
7
1_556
A
GLU
198
A
GLU
105
7
1_555
A
ASN
235
A
ASN
142
7
1_555
A
HOH
655
U
HOH
7
1_555
A
CYS
229
A
CYS
136
4
1_555
A
THR
231
A
THR
138
4
1_555
A
HOH
470
U
HOH
4
1_555
A
HOH
548
U
HOH
4
1_555
A
SER
94
A
SER
1
8
1_555
A
SER
95
A
SER
2
8
1_555
A
SER
96
A
SER
3
8
1_555
A
ASN
200
A
ASN
107
8
1_554
A
LEU
201
A
LEU
108
8
1_554
A
EDO
315
Q
EDO
8
1_554
A
HOH
594
U
HOH
8
1_555
A
HOH
679
U
HOH
8
1_554
A
LYS
120
A
LYS
27
7
1_555
A
ARG
280
A
ARG
187
7
1_555
A
ARG
283
A
ARG
190
7
1_555
A
HOH
464
U
HOH
7
1_555
A
HOH
547
U
HOH
7
1_555
B
DG
3
B
DG
3
7
2_554
B
HOH
227
V
HOH
7
2_554
A
SER
95
A
SER
2
7
1_556
A
GLU
221
A
GLU
128
7
1_555
A
THR
230
A
THR
137
7
1_555
A
THR
231
A
THR
138
7
1_555
A
EDO
313
O
EDO
7
1_556
A
HOH
492
U
HOH
7
1_555
A
HOH
634
U
HOH
7
1_555
A
ARG
283
A
ARG
190
3
1_555
A
GLU
286
A
GLU
193
3
1_555
A
GLU
287
A
GLU
194
3
1_555
A
ARG
248
A
ARG
155
5
1_555
B
DT
7
B
DT
7
5
1_555
B
DG
8
B
DG
8
5
1_555
B
EDO
102
T
EDO
5
2_554
B
HOH
241
V
HOH
5
1_555
A
SER
241
A
SER
148
7
2_554
A
ARG
248
A
ARG
155
7
2_554
B
DC
9
B
DC
9
7
1_555
B
EDO
101
S
EDO
7
2_554
B
HOH
213
V
HOH
7
1_555
B
HOH
219
V
HOH
7
1_555
B
HOH
223
V
HOH
7
1_555
5
C 1 2 1