0.015686
0.009056
0.000000
0.000000
0.018113
0.000000
0.000000
0.000000
0.009396
0.00000
0.00000
0.00000
Bajic, G.
Yatime, L.
Andersen, G.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
63.750
63.750
106.430
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
22
204
212
10.1002/pro.2200
23184394
Human C3a and C3a desArg anaphylatoxins have conserved structures, in contrast to C5a and C5a desArg.
2013
100
1
CCD
2012-02-18
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.8
1.0
I911-3
MAX II
1.8
SYNCHROTRON
MAX II BEAMLINE I911-3
9341.927
Complement C3
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
22
nat
water
C3 and PZP-like alpha-2-macroglobulin domain-containing protein 1, Complement C3 beta chain, Complement C3 alpha chain, C3a anaphylatoxin, Acylation stimulating protein, ASP, C3adesArg, Complement C3b alpha' chain, Complement C3c alpha' chain fragment 1, Complement C3dg fragment, Complement C3g fragment, Complement C3d fragment, Complement C3f fragment, Complement C3c alpha' chain fragment 2
no
no
GAGAAGSVQLTEKRMDKVGKYPKELRKCCEDGMRENPMRFSCQRRTRFISLGEACKKVFLDCCNYITELRRQHARASHLG
LA
GAGAAGSVQLTEKRMDKVGKYPKELRKCCEDGMRENPMRFSCQRRTRFISLGEACKKVFLDCCNYITELRRQHARASHLG
LA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
C3, CPAMD1
9606
Homo sapiens
562
Escherichia coli
SHuffle T7
plasmid
pET32a
1
3.34
63.19
VAPOR DIFFUSION, SITTING DROP
7.5
0.1 M Tris pH 7.5-8.5, 25 % w/v PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 292K
292
diffrn_source
repository
Initial release
Database references
Data collection
1
0
2012-12-12
1
1
2013-02-13
1
2
2018-03-07
_diffrn_source.pdbx_synchrotron_site
RCSB
Y
RCSB
2012-11-08
REL
REL
SO4
SULFATE ION
HOH
water
SO4
1
2
SO4
SO4
801
A
HOH
1
3
HOH
HOH
901
A
HOH
2
3
HOH
HOH
902
A
HOH
3
3
HOH
HOH
903
A
HOH
4
3
HOH
HOH
904
A
HOH
5
3
HOH
HOH
905
A
HOH
6
3
HOH
HOH
906
A
HOH
7
3
HOH
HOH
907
A
HOH
10
3
HOH
HOH
908
A
HOH
11
3
HOH
HOH
909
A
HOH
12
3
HOH
HOH
910
A
HOH
13
3
HOH
HOH
911
A
HOH
14
3
HOH
HOH
912
A
HOH
15
3
HOH
HOH
913
A
HOH
16
3
HOH
HOH
914
A
HOH
17
3
HOH
HOH
915
A
HOH
18
3
HOH
HOH
916
A
HOH
19
3
HOH
HOH
917
A
HOH
20
3
HOH
HOH
918
A
HOH
21
3
HOH
HOH
919
A
HOH
22
3
HOH
HOH
920
A
HOH
23
3
HOH
HOH
921
A
HOH
24
3
HOH
HOH
922
A
n
1
666
A
n
2
667
A
n
3
668
A
n
4
669
A
n
5
670
A
n
6
671
A
n
7
672
A
VAL
673
n
8
VAL
673
A
GLN
674
n
9
GLN
674
A
LEU
675
n
10
LEU
675
A
THR
676
n
11
THR
676
A
GLU
677
n
12
GLU
677
A
LYS
678
n
13
LYS
678
A
ARG
679
n
14
ARG
679
A
MET
680
n
15
MET
680
A
ASP
681
n
16
ASP
681
A
LYS
682
n
17
LYS
682
A
VAL
683
n
18
VAL
683
A
GLY
684
n
19
GLY
684
A
LYS
685
n
20
LYS
685
A
TYR
686
n
21
TYR
686
A
PRO
687
n
22
PRO
687
A
LYS
688
n
23
LYS
688
A
GLU
689
n
24
GLU
689
A
LEU
690
n
25
LEU
690
A
ARG
691
n
26
ARG
691
A
LYS
692
n
27
LYS
692
A
CYS
693
n
28
CYS
693
A
CYS
694
n
29
CYS
694
A
GLU
695
n
30
GLU
695
A
ASP
696
n
31
ASP
696
A
GLY
697
n
32
GLY
697
A
MET
698
n
33
MET
698
A
ARG
699
n
34
ARG
699
A
GLU
700
n
35
GLU
700
A
ASN
701
n
36
ASN
701
A
PRO
702
n
37
PRO
702
A
MET
703
n
38
MET
703
A
ARG
704
n
39
ARG
704
A
PHE
705
n
40
PHE
705
A
SER
706
n
41
SER
706
A
CYS
707
n
42
CYS
707
A
GLN
708
n
43
GLN
708
A
ARG
709
n
44
ARG
709
A
ARG
710
n
45
ARG
710
A
THR
711
n
46
THR
711
A
ARG
712
n
47
ARG
712
A
PHE
713
n
48
PHE
713
A
ILE
714
n
49
ILE
714
A
SER
715
n
50
SER
715
A
LEU
716
n
51
LEU
716
A
GLY
717
n
52
GLY
717
A
GLU
718
n
53
GLU
718
A
ALA
719
n
54
ALA
719
A
CYS
720
n
55
CYS
720
A
LYS
721
n
56
LYS
721
A
LYS
722
n
57
LYS
722
A
VAL
723
n
58
VAL
723
A
PHE
724
n
59
PHE
724
A
LEU
725
n
60
LEU
725
A
ASP
726
n
61
ASP
726
A
CYS
727
n
62
CYS
727
A
CYS
728
n
63
CYS
728
A
ASN
729
n
64
ASN
729
A
TYR
730
n
65
TYR
730
A
ILE
731
n
66
ILE
731
A
THR
732
n
67
THR
732
A
GLU
733
n
68
GLU
733
A
LEU
734
n
69
LEU
734
A
ARG
735
n
70
ARG
735
A
ARG
736
n
71
ARG
736
A
GLN
737
n
72
GLN
737
A
HIS
738
n
73
HIS
738
A
ALA
739
n
74
ALA
739
A
ARG
740
n
75
ARG
740
A
ALA
741
n
76
ALA
741
A
SER
742
n
77
SER
742
A
HIS
743
n
78
HIS
743
A
LEU
744
n
79
LEU
744
A
GLY
745
n
80
GLY
745
A
LEU
746
n
81
LEU
746
A
ALA
747
n
82
ALA
747
A
6.2821
0.9582
-0.2710
1.1626
-2.6232
7.8791
-0.2435
-0.2922
0.5925
2.5282
0.4609
-0.2972
-0.3395
-0.2245
-0.2553
1.0306
0.1071
-0.0657
0.4046
-0.0754
0.3739
refined
-80.9776
78.4568
234.0331
X-RAY DIFFRACTION
3.8710
1.7266
-3.1433
6.8868
-2.5582
8.5046
-0.4508
-0.0682
-0.1254
0.3794
0.0661
-0.7973
0.7828
-0.4585
0.2300
0.2936
-0.0071
-0.0191
0.3285
-0.0420
0.3639
refined
-74.7613
71.0959
220.5458
X-RAY DIFFRACTION
3.0004
-3.9660
2.3444
8.3415
-3.0240
4.7532
0.3726
0.0863
-0.2658
0.2477
-0.2656
0.4200
0.6121
0.4749
-0.1205
0.2558
0.0303
-0.0395
0.1842
0.0250
0.2550
refined
-85.0637
79.3980
222.9033
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 673 through 698 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 699 through 717 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 718 through 747 )
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
666
A
GLY
1
1
Y
1
A
ALA
667
A
ALA
2
1
Y
1
A
GLY
668
A
GLY
3
1
Y
1
A
ALA
669
A
ALA
4
1
Y
1
A
ALA
670
A
ALA
5
1
Y
1
A
GLY
671
A
GLY
6
1
Y
1
A
SER
672
A
SER
7
1
Y
1
A
SER
715
37.44
58.06
49.1619
0.2702
0.2228
0.2272
2.600
19.861
417
4318
4318
9.66
99.98
1.000
1.000
0.24
1
2.00
MOLECULAR REPLACEMENT
24.53
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
2.600
19.861
22
641
5
0
614
0.002
629
0.630
832
13.730
254
0.048
86
0.002
108
0.2774
0.2245
2.9756
126
1255
100.00
0.2778
0.2148
3.7448
150
1267
100.00
0.2624
0.2269
19.8615
141
1379
100.00
41.1
2.6
19.9
4HWJ
4320
4320
2.0
2.0
0.099
1
29.3
21.6
99.6
2.6
2.7
8.3
0.0521
1
22.2
100
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.1_1168
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
MxCuBE
Complement C3
Crystal Structure of the Human C3a desArg anaphylatoxin
1
N
N
2
N
N
3
N
N
A
GLN
674
A
GLN
9
HELX_P
A
LYS
685
A
LYS
20
1
1
12
A
TYR
686
A
TYR
21
HELX_P
A
GLU
689
A
GLU
24
5
2
4
A
LEU
690
A
LEU
25
HELX_P
A
MET
698
A
MET
33
1
3
9
A
GLN
708
A
GLN
43
HELX_P
A
ARG
712
A
ARG
47
5
4
5
A
GLY
717
A
GLY
52
HELX_P
A
LEU
744
A
LEU
79
1
5
28
disulf
2.030
A
CYS
693
A
SG
CYS
28
1_555
A
CYS
720
A
SG
CYS
55
1_555
disulf
2.032
A
CYS
694
A
SG
CYS
29
1_555
A
CYS
727
A
SG
CYS
62
1_555
disulf
2.036
A
CYS
707
A
SG
CYS
42
1_555
A
CYS
728
A
SG
CYS
63
1_555
IMMUNE SYSTEM
complement system, anaphylatoxins, inflammation, C3a, C3a desArg, innate immunity, four-helix-bundle, C5a, C5a desArg, IMMUNE SYSTEM
CO3_HUMAN
UNP
1
672
P01024
SVQLTEKRMDKVGKYPKELRKCCEDGMRENPMRFSCQRRTRFISLGEACKKVFLDCCNYITELRRQHARASHLGLA
672
747
4HWJ
672
747
P01024
A
1
7
82
1
EXPRESSION TAG
GLY
666
4HWJ
A
P01024
UNP
1
1
EXPRESSION TAG
ALA
667
4HWJ
A
P01024
UNP
2
1
EXPRESSION TAG
GLY
668
4HWJ
A
P01024
UNP
3
1
EXPRESSION TAG
ALA
669
4HWJ
A
P01024
UNP
4
1
EXPRESSION TAG
ALA
670
4HWJ
A
P01024
UNP
5
1
EXPRESSION TAG
GLY
671
4HWJ
A
P01024
UNP
6
BINDING SITE FOR RESIDUE SO4 A 801
Software
4
A
THR
732
A
THR
67
4
1_555
A
ARG
735
A
ARG
70
4
1_555
A
HOH
903
C
HOH
4
1_555
A
HOH
905
C
HOH
4
1_555
182
P 63 2 2