0.018119
0.000000
0.000000
0.000000
0.015083
0.000000
0.000000
0.000000
0.013697
0.00000
0.00000
0.00000
Ravi, S.N.M.
Leblanc, E.
Axerio-Cilies, P.
Labriere, C.
Frewin, K.
Hassona, M.D.H.
Lack, N.A.
Han, F.Q.
Guns, E.S.
Young, R.
Ban, F.
Rennie, P.S.
Cherkasov, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
55.190
66.300
73.010
C15 H14 N2 O S
270.349
2-[(2-phenoxyethyl)sulfanyl]-1H-benzimidazole
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C19 H28 O2
288.424
TESTOSTERONE
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
O
N
8
N
C
N
9
N
C
N
10
N
S
Y
11
N
C
Y
12
N
N
Y
13
N
C
Y
14
N
N
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
N
N
35
S
C
N
36
N
C
N
37
N
O
N
38
N
C
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
S
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
C
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
N
N
58
N
O
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
O
N
81
N
N
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
R
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
S
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
Y
189
N
C
Y
190
N
N
Y
191
N
C
Y
192
N
C
Y
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
S
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
S
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
S
N
352
N
O
N
353
N
O
N
354
N
O
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
C
N
362
N
C
N
363
N
C
N
364
R
C
N
365
S
C
N
366
R
C
N
367
N
C
N
368
N
C
N
369
S
C
N
370
S
C
N
371
N
C
N
372
N
C
N
373
S
C
N
374
N
O
N
375
N
C
N
376
N
C
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
R
C
N
410
N
O
N
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
N
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
N
460
N
O
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
N
N
474
S
C
N
475
N
C
N
476
N
O
N
477
N
C
N
478
N
C
N
479
N
C
N
480
N
O
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
Y
4
N
doub
Y
5
N
sing
Y
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
Y
10
N
sing
Y
11
N
sing
Y
12
N
sing
Y
13
N
doub
N
14
N
sing
N
15
N
sing
Y
16
N
doub
Y
17
N
sing
Y
18
N
sing
Y
19
N
doub
Y
20
N
doub
Y
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
doub
Y
426
N
sing
Y
427
N
sing
N
428
N
sing
Y
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
Y
449
N
doub
Y
450
N
sing
Y
451
N
sing
N
452
N
sing
Y
453
N
doub
N
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
56
1136
1148
10.1021/jm3015712
23301637
Targeting the Binding Function 3 (BF3) Site of the Androgen Receptor Through Virtual Screening. 2. Development of 2-((2-phenoxyethyl) thio)-1H-benzimidazole Derivatives.
2013
10.2210/pdb4hlw/pdb
pdb_00004hlw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
5.0.3
ALS
0.98
SYNCHROTRON
ALS BEAMLINE 5.0.3
29868.949
Androgen receptor
UNP residues 664-919
1
man
polymer
288.424
TESTOSTERONE
1
syn
non-polymer
270.349
2-[(2-phenoxyethyl)sulfanyl]-1H-benzimidazole
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
8
nat
water
Dihydrotestosterone receptor, Nuclear receptor subfamily 3 group C member 4
no
no
IEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMG
LMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKN
QKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQV
PKILSGKVKPIYFHTQ
IEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMG
LMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKN
QKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQV
PKILSGKVKPIYFHTQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
AR, DHTR, NR3C4
9606
Homo sapiens
469008
Escherichia coli
Bl21(DE3)
plasmid
pET28
1
2.24
44.99
VAPOR DIFFUSION, SITTING DROP
7.5
0.35MNa2HPO4/K2HPO4, 0.1M (NH4)2HPO4, 7.0% polyethylene glycol 400 (PEG 400), and 50mM Tris-HCl at pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
294
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2013-01-23
1
1
2013-02-27
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-10-17
REL
REL
TES
TESTOSTERONE
17W
2-[(2-phenoxyethyl)sulfanyl]-1H-benzimidazole
GOL
GLYCEROL
SO4
SULFATE ION
HOH
water
TES
1
2
TES
TES
1001
A
17W
1
3
17W
17W
1002
A
GOL
1
4
GOL
GOL
1003
A
SO4
1
5
SO4
SO4
1004
A
HOH
1
6
HOH
HOH
1101
A
HOH
4
6
HOH
HOH
1102
A
HOH
7
6
HOH
HOH
1103
A
HOH
8
6
HOH
HOH
1104
A
HOH
10
6
HOH
HOH
1105
A
HOH
13
6
HOH
HOH
1106
A
HOH
14
6
HOH
HOH
1107
A
HOH
15
6
HOH
HOH
1108
A
n
1
664
A
n
2
665
A
n
3
666
A
n
4
667
A
n
5
668
A
n
6
669
A
GLN
670
n
7
GLN
670
A
PRO
671
n
8
PRO
671
A
ILE
672
n
9
ILE
672
A
PHE
673
n
10
PHE
673
A
LEU
674
n
11
LEU
674
A
ASN
675
n
12
ASN
675
A
VAL
676
n
13
VAL
676
A
LEU
677
n
14
LEU
677
A
GLU
678
n
15
GLU
678
A
ALA
679
n
16
ALA
679
A
ILE
680
n
17
ILE
680
A
GLU
681
n
18
GLU
681
A
PRO
682
n
19
PRO
682
A
GLY
683
n
20
GLY
683
A
VAL
684
n
21
VAL
684
A
VAL
685
n
22
VAL
685
A
CYS
686
n
23
CYS
686
A
ALA
687
n
24
ALA
687
A
GLY
688
n
25
GLY
688
A
HIS
689
n
26
HIS
689
A
ASP
690
n
27
ASP
690
A
ASN
691
n
28
ASN
691
A
ASN
692
n
29
ASN
692
A
GLN
693
n
30
GLN
693
A
PRO
694
n
31
PRO
694
A
ASP
695
n
32
ASP
695
A
SER
696
n
33
SER
696
A
PHE
697
n
34
PHE
697
A
ALA
698
n
35
ALA
698
A
ALA
699
n
36
ALA
699
A
LEU
700
n
37
LEU
700
A
LEU
701
n
38
LEU
701
A
SER
702
n
39
SER
702
A
SER
703
n
40
SER
703
A
LEU
704
n
41
LEU
704
A
ASN
705
n
42
ASN
705
A
GLU
706
n
43
GLU
706
A
LEU
707
n
44
LEU
707
A
GLY
708
n
45
GLY
708
A
GLU
709
n
46
GLU
709
A
ARG
710
n
47
ARG
710
A
GLN
711
n
48
GLN
711
A
LEU
712
n
49
LEU
712
A
VAL
713
n
50
VAL
713
A
HIS
714
n
51
HIS
714
A
VAL
715
n
52
VAL
715
A
VAL
716
n
53
VAL
716
A
LYS
717
n
54
LYS
717
A
TRP
718
n
55
TRP
718
A
ALA
719
n
56
ALA
719
A
LYS
720
n
57
LYS
720
A
ALA
721
n
58
ALA
721
A
LEU
722
n
59
LEU
722
A
PRO
723
n
60
PRO
723
A
GLY
724
n
61
GLY
724
A
PHE
725
n
62
PHE
725
A
ARG
726
n
63
ARG
726
A
ASN
727
n
64
ASN
727
A
LEU
728
n
65
LEU
728
A
HIS
729
n
66
HIS
729
A
VAL
730
n
67
VAL
730
A
ASP
731
n
68
ASP
731
A
ASP
732
n
69
ASP
732
A
GLN
733
n
70
GLN
733
A
MET
734
n
71
MET
734
A
ALA
735
n
72
ALA
735
A
VAL
736
n
73
VAL
736
A
ILE
737
n
74
ILE
737
A
GLN
738
n
75
GLN
738
A
TYR
739
n
76
TYR
739
A
SER
740
n
77
SER
740
A
TRP
741
n
78
TRP
741
A
MET
742
n
79
MET
742
A
GLY
743
n
80
GLY
743
A
LEU
744
n
81
LEU
744
A
MET
745
n
82
MET
745
A
VAL
746
n
83
VAL
746
A
PHE
747
n
84
PHE
747
A
ALA
748
n
85
ALA
748
A
MET
749
n
86
MET
749
A
GLY
750
n
87
GLY
750
A
TRP
751
n
88
TRP
751
A
ARG
752
n
89
ARG
752
A
SER
753
n
90
SER
753
A
PHE
754
n
91
PHE
754
A
THR
755
n
92
THR
755
A
ASN
756
n
93
ASN
756
A
VAL
757
n
94
VAL
757
A
ASN
758
n
95
ASN
758
A
SER
759
n
96
SER
759
A
ARG
760
n
97
ARG
760
A
MET
761
n
98
MET
761
A
LEU
762
n
99
LEU
762
A
TYR
763
n
100
TYR
763
A
PHE
764
n
101
PHE
764
A
ALA
765
n
102
ALA
765
A
PRO
766
n
103
PRO
766
A
ASP
767
n
104
ASP
767
A
LEU
768
n
105
LEU
768
A
VAL
769
n
106
VAL
769
A
PHE
770
n
107
PHE
770
A
ASN
771
n
108
ASN
771
A
GLU
772
n
109
GLU
772
A
TYR
773
n
110
TYR
773
A
ARG
774
n
111
ARG
774
A
MET
775
n
112
MET
775
A
HIS
776
n
113
HIS
776
A
LYS
777
n
114
LYS
777
A
SER
778
n
115
SER
778
A
ARG
779
n
116
ARG
779
A
MET
780
n
117
MET
780
A
TYR
781
n
118
TYR
781
A
SER
782
n
119
SER
782
A
GLN
783
n
120
GLN
783
A
CYS
784
n
121
CYS
784
A
VAL
785
n
122
VAL
785
A
ARG
786
n
123
ARG
786
A
MET
787
n
124
MET
787
A
ARG
788
n
125
ARG
788
A
HIS
789
n
126
HIS
789
A
LEU
790
n
127
LEU
790
A
SER
791
n
128
SER
791
A
GLN
792
n
129
GLN
792
A
GLU
793
n
130
GLU
793
A
PHE
794
n
131
PHE
794
A
GLY
795
n
132
GLY
795
A
TRP
796
n
133
TRP
796
A
LEU
797
n
134
LEU
797
A
GLN
798
n
135
GLN
798
A
ILE
799
n
136
ILE
799
A
THR
800
n
137
THR
800
A
PRO
801
n
138
PRO
801
A
GLN
802
n
139
GLN
802
A
GLU
803
n
140
GLU
803
A
PHE
804
n
141
PHE
804
A
LEU
805
n
142
LEU
805
A
CYS
806
n
143
CYS
806
A
MET
807
n
144
MET
807
A
LYS
808
n
145
LYS
808
A
ALA
809
n
146
ALA
809
A
LEU
810
n
147
LEU
810
A
LEU
811
n
148
LEU
811
A
LEU
812
n
149
LEU
812
A
PHE
813
n
150
PHE
813
A
SER
814
n
151
SER
814
A
ILE
815
n
152
ILE
815
A
ILE
816
n
153
ILE
816
A
PRO
817
n
154
PRO
817
A
VAL
818
n
155
VAL
818
A
ASP
819
n
156
ASP
819
A
GLY
820
n
157
GLY
820
A
LEU
821
n
158
LEU
821
A
LYS
822
n
159
LYS
822
A
ASN
823
n
160
ASN
823
A
GLN
824
n
161
GLN
824
A
LYS
825
n
162
LYS
825
A
PHE
826
n
163
PHE
826
A
PHE
827
n
164
PHE
827
A
ASP
828
n
165
ASP
828
A
GLU
829
n
166
GLU
829
A
LEU
830
n
167
LEU
830
A
ARG
831
n
168
ARG
831
A
MET
832
n
169
MET
832
A
ASN
833
n
170
ASN
833
A
TYR
834
n
171
TYR
834
A
ILE
835
n
172
ILE
835
A
LYS
836
n
173
LYS
836
A
GLU
837
n
174
GLU
837
A
LEU
838
n
175
LEU
838
A
ASP
839
n
176
ASP
839
A
ARG
840
n
177
ARG
840
A
ILE
841
n
178
ILE
841
A
ILE
842
n
179
ILE
842
A
ALA
843
n
180
ALA
843
A
n
181
844
A
n
182
845
A
n
183
846
A
n
184
847
A
n
185
848
A
n
186
849
A
THR
850
n
187
THR
850
A
SER
851
n
188
SER
851
A
CYS
852
n
189
CYS
852
A
SER
853
n
190
SER
853
A
ARG
854
n
191
ARG
854
A
ARG
855
n
192
ARG
855
A
PHE
856
n
193
PHE
856
A
TYR
857
n
194
TYR
857
A
GLN
858
n
195
GLN
858
A
LEU
859
n
196
LEU
859
A
THR
860
n
197
THR
860
A
LYS
861
n
198
LYS
861
A
LEU
862
n
199
LEU
862
A
LEU
863
n
200
LEU
863
A
ASP
864
n
201
ASP
864
A
SER
865
n
202
SER
865
A
VAL
866
n
203
VAL
866
A
GLN
867
n
204
GLN
867
A
PRO
868
n
205
PRO
868
A
ILE
869
n
206
ILE
869
A
ALA
870
n
207
ALA
870
A
ARG
871
n
208
ARG
871
A
GLU
872
n
209
GLU
872
A
LEU
873
n
210
LEU
873
A
HIS
874
n
211
HIS
874
A
GLN
875
n
212
GLN
875
A
PHE
876
n
213
PHE
876
A
THR
877
n
214
THR
877
A
PHE
878
n
215
PHE
878
A
ASP
879
n
216
ASP
879
A
LEU
880
n
217
LEU
880
A
LEU
881
n
218
LEU
881
A
ILE
882
n
219
ILE
882
A
LYS
883
n
220
LYS
883
A
SER
884
n
221
SER
884
A
HIS
885
n
222
HIS
885
A
MET
886
n
223
MET
886
A
VAL
887
n
224
VAL
887
A
SER
888
n
225
SER
888
A
VAL
889
n
226
VAL
889
A
ASP
890
n
227
ASP
890
A
PHE
891
n
228
PHE
891
A
PRO
892
n
229
PRO
892
A
GLU
893
n
230
GLU
893
A
MET
894
n
231
MET
894
A
MET
895
n
232
MET
895
A
ALA
896
n
233
ALA
896
A
GLU
897
n
234
GLU
897
A
ILE
898
n
235
ILE
898
A
ILE
899
n
236
ILE
899
A
SER
900
n
237
SER
900
A
VAL
901
n
238
VAL
901
A
GLN
902
n
239
GLN
902
A
VAL
903
n
240
VAL
903
A
PRO
904
n
241
PRO
904
A
LYS
905
n
242
LYS
905
A
ILE
906
n
243
ILE
906
A
LEU
907
n
244
LEU
907
A
SER
908
n
245
SER
908
A
GLY
909
n
246
GLY
909
A
LYS
910
n
247
LYS
910
A
VAL
911
n
248
VAL
911
A
LYS
912
n
249
LYS
912
A
PRO
913
n
250
PRO
913
A
ILE
914
n
251
ILE
914
A
TYR
915
n
252
TYR
915
A
PHE
916
n
253
PHE
916
A
HIS
917
n
254
HIS
917
A
THR
918
n
255
THR
918
A
GLN
919
n
256
GLN
919
A
1.3395
0.2758
-0.6923
2.3020
-0.0785
2.4443
-0.0521
0.1628
0.0421
-0.1082
0.0800
-0.0198
0.1066
-0.1644
-0.0217
0.2150
-0.0648
-0.0656
0.2458
0.0372
0.2338
refined
21.4180
4.9054
11.4271
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
all
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
762
A
N
LEU
99
A
O
PHE
770
A
O
PHE
107
A
N
ILE
816
A
N
ILE
153
A
O
LYS
912
A
O
LYS
249
1
A
CG
GLN
670
A
CG
GLN
7
1
Y
1
A
CD
GLN
670
A
CD
GLN
7
1
Y
1
A
OE1
GLN
670
A
OE1
GLN
7
1
Y
1
A
NE2
GLN
670
A
NE2
GLN
7
1
Y
1
A
CG
GLU
678
A
CG
GLU
15
1
Y
1
A
CD
GLU
678
A
CD
GLU
15
1
Y
1
A
OE1
GLU
678
A
OE1
GLU
15
1
Y
1
A
OE2
GLU
678
A
OE2
GLU
15
1
Y
1
A
CG
GLN
693
A
CG
GLN
30
1
Y
1
A
CD
GLN
693
A
CD
GLN
30
1
Y
1
A
OE1
GLN
693
A
OE1
GLN
30
1
Y
1
A
NE2
GLN
693
A
NE2
GLN
30
1
Y
1
A
CG
ARG
760
A
CG
ARG
97
1
Y
1
A
CD
ARG
760
A
CD
ARG
97
1
Y
1
A
NE
ARG
760
A
NE
ARG
97
1
Y
1
A
CZ
ARG
760
A
CZ
ARG
97
1
Y
1
A
NH1
ARG
760
A
NH1
ARG
97
1
Y
1
A
NH2
ARG
760
A
NH2
ARG
97
1
Y
1
A
CG
ASP
819
A
CG
ASP
156
1
Y
1
A
OD1
ASP
819
A
OD1
ASP
156
1
Y
1
A
OD2
ASP
819
A
OD2
ASP
156
1
Y
1
A
CG
LYS
825
A
CG
LYS
162
1
Y
1
A
CD
LYS
825
A
CD
LYS
162
1
Y
1
A
CE
LYS
825
A
CE
LYS
162
1
Y
1
A
NZ
LYS
825
A
NZ
LYS
162
1
Y
1
A
CG
GLU
829
A
CG
GLU
166
1
Y
1
A
CD
GLU
829
A
CD
GLU
166
1
Y
1
A
OE1
GLU
829
A
OE1
GLU
166
1
Y
1
A
OE2
GLU
829
A
OE2
GLU
166
1
Y
1
A
CG
LYS
836
A
CG
LYS
173
1
Y
1
A
CD
LYS
836
A
CD
LYS
173
1
Y
1
A
CE
LYS
836
A
CE
LYS
173
1
Y
1
A
NZ
LYS
836
A
NZ
LYS
173
1
Y
1
A
CG
ARG
854
A
CG
ARG
191
1
Y
1
A
CD
ARG
854
A
CD
ARG
191
1
Y
1
A
NE
ARG
854
A
NE
ARG
191
1
Y
1
A
CZ
ARG
854
A
CZ
ARG
191
1
Y
1
A
NH1
ARG
854
A
NH1
ARG
191
1
Y
1
A
NH2
ARG
854
A
NH2
ARG
191
1
Y
1
A
CG
ASP
890
A
CG
ASP
227
0
Y
1
A
CG
GLU
893
A
CG
GLU
230
1
Y
1
A
CD
GLU
893
A
CD
GLU
230
1
Y
1
A
OE1
GLU
893
A
OE1
GLU
230
1
Y
1
A
OE2
GLU
893
A
OE2
GLU
230
1
Y
1
A
CG
LYS
912
A
CG
LYS
249
1
Y
1
A
CD
LYS
912
A
CD
LYS
249
1
Y
1
A
CE
LYS
912
A
CE
LYS
249
1
Y
1
A
NZ
LYS
912
A
NZ
LYS
249
1
Y
1
A
ILE
664
A
ILE
1
1
Y
1
A
GLU
665
A
GLU
2
1
Y
1
A
GLY
666
A
GLY
3
1
Y
1
A
TYR
667
A
TYR
4
1
Y
1
A
GLU
668
A
GLU
5
1
Y
1
A
CYS
669
A
CYS
6
1
Y
1
A
CYS
844
A
CYS
181
1
Y
1
A
LYS
845
A
LYS
182
1
Y
1
A
ARG
846
A
ARG
183
1
Y
1
A
LYS
847
A
LYS
184
1
Y
1
A
ASN
848
A
ASN
185
1
Y
1
A
PRO
849
A
PRO
186
1
Y
1
A
SER
759
54.96
8.82
1
A
LEU
768
-159.42
75.66
0.2388
0.1743
0.1773
2.500
42.417
466
9705
4.80
99.80
0.37
1
1.39
MOLECULAR REPLACEMENT
25.01
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
2.500
42.417
8
2009
51
0
1950
0.008
2057
1.203
2793
14.832
743
0.076
310
0.005
348
0.3003
0.2373
2.8617
151
3008
100.00
0.2906
0.1999
3.6052
161
3037
100.00
0.2001
0.1494
42.4231
154
3194
100.00
2.5
42.42
4HLW
9705
1
refinement
PHENIX
(phenix.refine: 1.8.1_1168)
Targeting the Binding Function 3 (BF3) Site of the Human Androgen Receptor Through Virtual Screening. 2. Development of 2-((2-phenoxyethyl) thio)-1H-benzoimidazole derivatives.
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
PRO
671
A
PRO
8
HELX_P
A
GLU
681
A
GLU
18
1
1
11
A
SER
696
A
SER
33
HELX_P
A
ALA
721
A
ALA
58
1
2
26
A
GLY
724
A
GLY
61
HELX_P
A
LEU
728
A
LEU
65
5
3
5
A
HIS
729
A
HIS
66
HELX_P
A
VAL
757
A
VAL
94
1
4
29
A
ASN
771
A
ASN
108
HELX_P
A
SER
778
A
SER
115
1
5
8
A
MET
780
A
MET
117
HELX_P
A
GLN
798
A
GLN
135
1
6
19
A
THR
800
A
THR
137
HELX_P
A
LEU
812
A
LEU
149
1
7
13
A
ASN
823
A
ASN
160
HELX_P
A
ALA
843
A
ALA
180
1
8
21
A
SER
851
A
SER
188
HELX_P
A
SER
865
A
SER
202
1
9
15
A
SER
865
A
SER
202
HELX_P
A
LYS
883
A
LYS
220
1
10
19
A
PRO
892
A
PRO
229
HELX_P
A
GLN
902
A
GLN
239
1
11
11
A
GLN
902
A
GLN
239
HELX_P
A
SER
908
A
SER
245
1
12
7
TRANSCRIPTION
Nuclear Hormone Receptor, Androgen Binding Domain, Transcriptional factor, TRANSCRIPTION
ANDR_HUMAN
UNP
1
664
P10275
IEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMG
LMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKN
QKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQV
PKILSGKVKPIYFHTQ
664
919
4HLW
664
919
P10275
A
1
1
256
2
2
anti-parallel
anti-parallel
A
LEU
762
A
LEU
99
A
ALA
765
A
ALA
102
A
LEU
768
A
LEU
105
A
PHE
770
A
PHE
107
A
ILE
815
A
ILE
152
A
PRO
817
A
PRO
154
A
VAL
911
A
VAL
248
A
PRO
913
A
PRO
250
BINDING SITE FOR RESIDUE TES A 1001
A
TES
1001
Software
5
BINDING SITE FOR RESIDUE 17W A 1002
A
17W
1002
Software
7
BINDING SITE FOR RESIDUE GOL A 1003
A
GOL
1003
Software
4
BINDING SITE FOR RESIDUE SO4 A 1004
A
SO4
1004
Software
5
A
LEU
704
A
LEU
41
5
1_555
A
ASN
705
A
ASN
42
5
1_555
A
GLN
711
A
GLN
48
5
1_555
A
ARG
752
A
ARG
89
5
1_555
A
THR
877
A
THR
214
5
1_555
A
PHE
673
A
PHE
10
7
1_555
A
PRO
723
A
PRO
60
7
1_555
A
ASN
727
A
ASN
64
7
1_555
A
LEU
830
A
LEU
167
7
1_555
A
GLU
837
A
GLU
174
7
1_555
A
ARG
840
A
ARG
177
7
1_555
A
ILE
882
A
ILE
219
7
3_655
A
PRO
682
A
PRO
19
4
1_555
A
GLN
711
A
GLN
48
4
1_555
A
VAL
715
A
VAL
52
4
1_555
A
LYS
808
A
LYS
145
4
1_555
A
SER
696
A
SER
33
5
1_555
A
PHE
697
A
PHE
34
5
1_555
A
LYS
777
A
LYS
114
5
1_555
A
ARG
779
A
ARG
116
5
1_555
A
SER
853
A
SER
190
5
2_554
19
P 21 21 21