0.024466
0.000000
0.000000
0.000000
0.016879
0.000000
0.000000
0.000000
0.015206
0.000000
0.000000
0.000000
Dickey, T.H.
Wuttke, D.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
40.873
59.244
65.763
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
N
100
N
N
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
C
N
105
N
N
N
106
N
C
N
107
N
C
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
O
N
123
N
P
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
C
N
128
R
C
N
129
N
O
N
130
S
C
N
131
N
O
N
132
N
C
N
133
R
C
Y
134
N
N
Y
135
N
C
Y
136
N
N
Y
137
N
C
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
N
Y
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
N
171
N
N
N
172
N
C
N
173
N
O
N
174
N
N
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
N
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
O
N
223
N
O
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
Y
249
N
C
Y
250
N
N
Y
251
N
C
Y
252
N
C
Y
253
N
N
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
S
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
N
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
S
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
R
C
N
416
N
O
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
N
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
N
466
N
O
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
N
N
480
S
C
N
481
N
C
N
482
N
O
N
483
N
C
N
484
N
C
N
485
N
C
N
486
N
O
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
sing
Y
142
N
sing
Y
143
N
doub
N
144
N
sing
Y
145
N
sing
N
146
N
sing
Y
147
N
doub
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
Y
251
N
sing
Y
252
N
doub
Y
253
N
doub
N
254
N
sing
Y
255
N
sing
N
256
N
sing
Y
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
Y
359
N
doub
Y
360
N
sing
Y
361
N
sing
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
Y
456
N
doub
Y
457
N
sing
Y
458
N
sing
N
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
doub
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
UK
Structure
STRUE6
2005
0969-2126
21
121
132
10.1016/j.str.2012.10.015
23201273
Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
2013
10.2210/pdb4hj5/pdb
pdb_00004hj5
100
1
IMAGE PLATE
2012-02-07
RIGAKU RAXIS IV++
osmic mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RUH2R
17182.414
Protection of telomeres protein 1
Pot1pC, partial DNA binding domain, residues 198-339
V199D
1
man
polymer
telomeric single-stranded DNA, A5T variant
2777.819
DNA (5'-D(*GP*GP*TP*TP*TP*CP*GP*GP*T)-3')
1
syn
polymer
18.015
water
93
nat
water
no
no
MSDSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCR
NYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN
MSDSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCR
NYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN
A
polypeptide(L)
no
no
(DG)(DG)(DT)(DT)(DT)(DC)(DG)(DG)(DT)
GGTTTCGGT
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Fission yeast
972h-
sample
pot1, SPAC26H5.06
284812
Schizosaccharomyces pombe
469008
Escherichia coli
BL21 (DE3)
plasmid
pTXB1
1
1.99
38.33
VAPOR DIFFUSION, HANGING DROP
7
35% PEG 6000, 0.2M sodium formate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
pdbx_unobs_or_zero_occ_atoms
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
struct_ref_seq_dif
repository
Initial release
Database references
Advisory
Refinement description
Advisory
Data collection
Database references
Refinement description
1
0
2012-12-12
1
1
2013-02-27
1
2
2017-11-15
1
3
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
RCSB
Y
RCSB
2012-10-12
REL
REL
HOH
water
variation of S. pombe telomeric sequence
284812
Schizosaccharomyces pombe
sample
4HIK
PDB
experimental model
HOH
1
3
HOH
HOH
201
A
HOH
2
3
HOH
HOH
202
A
HOH
3
3
HOH
HOH
203
A
HOH
4
3
HOH
HOH
204
A
HOH
5
3
HOH
HOH
205
A
HOH
6
3
HOH
HOH
206
A
HOH
7
3
HOH
HOH
207
A
HOH
10
3
HOH
HOH
208
A
HOH
13
3
HOH
HOH
209
A
HOH
14
3
HOH
HOH
210
A
HOH
15
3
HOH
HOH
211
A
HOH
16
3
HOH
HOH
212
A
HOH
17
3
HOH
HOH
213
A
HOH
18
3
HOH
HOH
214
A
HOH
20
3
HOH
HOH
215
A
HOH
21
3
HOH
HOH
216
A
HOH
22
3
HOH
HOH
217
A
HOH
23
3
HOH
HOH
218
A
HOH
24
3
HOH
HOH
219
A
HOH
25
3
HOH
HOH
220
A
HOH
26
3
HOH
HOH
221
A
HOH
27
3
HOH
HOH
222
A
HOH
28
3
HOH
HOH
223
A
HOH
29
3
HOH
HOH
224
A
HOH
30
3
HOH
HOH
225
A
HOH
31
3
HOH
HOH
226
A
HOH
32
3
HOH
HOH
227
A
HOH
33
3
HOH
HOH
228
A
HOH
35
3
HOH
HOH
229
A
HOH
37
3
HOH
HOH
230
A
HOH
38
3
HOH
HOH
231
A
HOH
40
3
HOH
HOH
232
A
HOH
42
3
HOH
HOH
233
A
HOH
43
3
HOH
HOH
234
A
HOH
44
3
HOH
HOH
235
A
HOH
45
3
HOH
HOH
236
A
HOH
46
3
HOH
HOH
237
A
HOH
47
3
HOH
HOH
238
A
HOH
49
3
HOH
HOH
239
A
HOH
50
3
HOH
HOH
240
A
HOH
51
3
HOH
HOH
241
A
HOH
52
3
HOH
HOH
242
A
HOH
53
3
HOH
HOH
243
A
HOH
54
3
HOH
HOH
244
A
HOH
55
3
HOH
HOH
245
A
HOH
56
3
HOH
HOH
246
A
HOH
57
3
HOH
HOH
247
A
HOH
58
3
HOH
HOH
248
A
HOH
60
3
HOH
HOH
249
A
HOH
61
3
HOH
HOH
250
A
HOH
62
3
HOH
HOH
251
A
HOH
63
3
HOH
HOH
252
A
HOH
64
3
HOH
HOH
253
A
HOH
65
3
HOH
HOH
254
A
HOH
66
3
HOH
HOH
255
A
HOH
68
3
HOH
HOH
256
A
HOH
69
3
HOH
HOH
257
A
HOH
73
3
HOH
HOH
258
A
HOH
74
3
HOH
HOH
259
A
HOH
75
3
HOH
HOH
260
A
HOH
76
3
HOH
HOH
261
A
HOH
77
3
HOH
HOH
262
A
HOH
78
3
HOH
HOH
263
A
HOH
79
3
HOH
HOH
264
A
HOH
80
3
HOH
HOH
265
A
HOH
81
3
HOH
HOH
266
A
HOH
84
3
HOH
HOH
267
A
HOH
85
3
HOH
HOH
268
A
HOH
87
3
HOH
HOH
269
A
HOH
88
3
HOH
HOH
270
A
HOH
89
3
HOH
HOH
271
A
HOH
90
3
HOH
HOH
272
A
HOH
91
3
HOH
HOH
273
A
HOH
92
3
HOH
HOH
274
A
HOH
93
3
HOH
HOH
275
A
HOH
94
3
HOH
HOH
276
A
HOH
95
3
HOH
HOH
277
A
HOH
96
3
HOH
HOH
278
A
HOH
8
3
HOH
HOH
101
B
HOH
9
3
HOH
HOH
102
B
HOH
11
3
HOH
HOH
103
B
HOH
12
3
HOH
HOH
104
B
HOH
34
3
HOH
HOH
105
B
HOH
36
3
HOH
HOH
106
B
HOH
39
3
HOH
HOH
107
B
HOH
41
3
HOH
HOH
108
B
HOH
59
3
HOH
HOH
109
B
HOH
70
3
HOH
HOH
110
B
HOH
71
3
HOH
HOH
111
B
HOH
72
3
HOH
HOH
112
B
HOH
82
3
HOH
HOH
113
B
HOH
83
3
HOH
HOH
114
B
HOH
86
3
HOH
HOH
115
B
n
1
1
A
n
2
2
A
n
3
3
A
SER
4
n
4
SER
4
A
PHE
5
n
5
PHE
5
A
SER
6
n
6
SER
6
A
LEU
7
n
7
LEU
7
A
LEU
8
n
8
LEU
8
A
SER
9
n
9
SER
9
A
GLN
10
n
10
GLN
10
A
ILE
11
n
11
ILE
11
A
THR
12
n
12
THR
12
A
PRO
13
n
13
PRO
13
A
HIS
14
n
14
HIS
14
A
GLN
15
n
15
GLN
15
A
ARG
16
n
16
ARG
16
A
CYS
17
n
17
CYS
17
A
SER
18
n
18
SER
18
A
PHE
19
n
19
PHE
19
A
TYR
20
n
20
TYR
20
A
ALA
21
n
21
ALA
21
A
GLN
22
n
22
GLN
22
A
VAL
23
n
23
VAL
23
A
ILE
24
n
24
ILE
24
A
LYS
25
n
25
LYS
25
A
THR
26
n
26
THR
26
A
TRP
27
n
27
TRP
27
A
TYR
28
n
28
TYR
28
A
SER
29
n
29
SER
29
A
ASP
30
n
30
ASP
30
A
LYS
31
n
31
LYS
31
A
ASN
32
n
32
ASN
32
A
PHE
33
n
33
PHE
33
A
THR
34
n
34
THR
34
A
LEU
35
n
35
LEU
35
A
TYR
36
n
36
TYR
36
A
VAL
37
n
37
VAL
37
A
THR
38
n
38
THR
38
A
ASP
39
n
39
ASP
39
A
TYR
40
n
40
TYR
40
A
THR
41
n
41
THR
41
A
GLU
42
n
42
GLU
42
A
ASN
43
n
43
ASN
43
A
GLU
44
n
44
GLU
44
A
LEU
45
n
45
LEU
45
A
PHE
46
n
46
PHE
46
A
PHE
47
n
47
PHE
47
A
PRO
48
n
48
PRO
48
A
MET
49
n
49
MET
49
A
SER
50
n
50
SER
50
A
PRO
51
n
51
PRO
51
A
TYR
52
n
52
TYR
52
A
THR
53
n
53
THR
53
A
SER
54
n
54
SER
54
A
SER
55
n
55
SER
55
A
SER
56
n
56
SER
56
A
ARG
57
n
57
ARG
57
A
TRP
58
n
58
TRP
58
A
ARG
59
n
59
ARG
59
A
GLY
60
n
60
GLY
60
A
PRO
61
n
61
PRO
61
A
PHE
62
n
62
PHE
62
A
GLY
63
n
63
GLY
63
A
ARG
64
n
64
ARG
64
A
PHE
65
n
65
PHE
65
A
SER
66
n
66
SER
66
A
ILE
67
n
67
ILE
67
A
ARG
68
n
68
ARG
68
A
CYS
69
n
69
CYS
69
A
ILE
70
n
70
ILE
70
A
LEU
71
n
71
LEU
71
A
TRP
72
n
72
TRP
72
A
ASP
73
n
73
ASP
73
A
GLU
74
n
74
GLU
74
A
HIS
75
n
75
HIS
75
A
ASP
76
n
76
ASP
76
A
PHE
77
n
77
PHE
77
A
TYR
78
n
78
TYR
78
A
CYS
79
n
79
CYS
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
TYR
82
n
82
TYR
82
A
ILE
83
n
83
ILE
83
A
LYS
84
n
84
LYS
84
A
GLU
85
n
85
GLU
85
A
GLY
86
n
86
GLY
86
A
ASP
87
n
87
ASP
87
A
TYR
88
n
88
TYR
88
A
VAL
89
n
89
VAL
89
A
VAL
90
n
90
VAL
90
A
MET
91
n
91
MET
91
A
LYS
92
n
92
LYS
92
A
ASN
93
n
93
ASN
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
THR
96
n
96
THR
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
ASP
99
n
99
ASP
99
A
HIS
100
n
100
HIS
100
A
LEU
101
n
101
LEU
101
A
GLY
102
n
102
GLY
102
A
TYR
103
n
103
TYR
103
A
LEU
104
n
104
LEU
104
A
GLU
105
n
105
GLU
105
A
CYS
106
n
106
CYS
106
A
ILE
107
n
107
ILE
107
A
LEU
108
n
108
LEU
108
A
HIS
109
n
109
HIS
109
A
GLY
110
n
110
GLY
110
A
ASP
111
n
111
ASP
111
A
SER
112
n
112
SER
112
A
ALA
113
n
113
ALA
113
A
LYS
114
n
114
LYS
114
A
ARG
115
n
115
ARG
115
A
TYR
116
n
116
TYR
116
A
ASN
117
n
117
ASN
117
A
MET
118
n
118
MET
118
A
SER
119
n
119
SER
119
A
ILE
120
n
120
ILE
120
A
GLU
121
n
121
GLU
121
A
LYS
122
n
122
LYS
122
A
VAL
123
n
123
VAL
123
A
ASP
124
n
124
ASP
124
A
SER
125
n
125
SER
125
A
GLU
126
n
126
GLU
126
A
GLU
127
n
127
GLU
127
A
PRO
128
n
128
PRO
128
A
GLU
129
n
129
GLU
129
A
LEU
130
n
130
LEU
130
A
ASN
131
n
131
ASN
131
A
GLU
132
n
132
GLU
132
A
ILE
133
n
133
ILE
133
A
LYS
134
n
134
LYS
134
A
SER
135
n
135
SER
135
A
ARG
136
n
136
ARG
136
A
LYS
137
n
137
LYS
137
A
ARG
138
n
138
ARG
138
A
LEU
139
n
139
LEU
139
A
TYR
140
n
140
TYR
140
A
VAL
141
n
141
VAL
141
A
n
142
142
A
n
143
143
A
G
1
n
1
DG
1
B
G
2
n
2
DG
2
B
T
3
n
3
DT
3
B
T
4
n
4
DT
4
B
T
5
n
5
DT
5
B
C
6
n
6
DC
6
B
G
7
n
7
DG
7
B
G
8
n
8
DG
8
B
T
9
n
9
DT
9
B
author_and_software_defined_assembly
PISA
2
dimeric
2080
-12
8630
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
123
A
O
VAL
123
A
N
TYR
88
A
N
TYR
88
A
N
LYS
97
A
N
LYS
97
A
O
GLU
105
A
O
GLU
105
A
O
CYS
106
A
O
CYS
106
A
N
ILE
70
A
N
ILE
70
A
O
CYS
69
A
O
CYS
69
A
N
LEU
35
A
N
LEU
35
A
O
THR
38
A
O
THR
38
A
N
GLN
22
A
N
GLN
22
A
N
ALA
21
A
N
ALA
21
A
O
VAL
89
A
O
VAL
89
1
A
CA
CYS
106
B
A
CA
CYS
106
0
Y
1
A
CB
CYS
106
B
A
CB
CYS
106
0
Y
1
A
SG
CYS
106
B
A
SG
CYS
106
0
Y
1
A
OG
SER
112
A
OG
SER
112
1
Y
1
A
CG
LYS
114
A
CG
LYS
114
1
Y
1
A
CD
LYS
114
A
CD
LYS
114
1
Y
1
A
CE
LYS
114
A
CE
LYS
114
1
Y
1
A
NZ
LYS
114
A
NZ
LYS
114
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
ASP
3
A
ASP
3
1
Y
1
A
GLN
142
A
GLN
142
1
Y
1
A
ASN
143
A
ASN
143
1
Y
1
A
A
O
O
ASN
HOH
117
255
1.94
1
A
A
O
O
HOH
HOH
253
262
2.03
1
A
B
O
O
HOH
HOH
221
101
2.13
1
A
A
OE1
O
GLU
HOH
42
264
2.16
1
B
B
OP1
O
DC
HOH
6
103
2.19
1
1.97
0.30
108.30
110.27
B
B
B
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
3.22
0.30
108.30
111.52
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
A
SER
55
75.75
91.90
1
A
ASP
73
53.30
-123.31
1
A
TYR
82
-132.31
-55.98
1
A
SER
112
58.92
-121.32
75.550
38.5819
18.280
5.9957
-0.0000
-0.0000
-1.4473
0.0000
-5.2647
0.2609
0.2260
.2295
0.2295
2.0400
29.9510
951
9833
9514
10.0000
89.3800
1.000
0.000
0.3100
random
1
0.000
MOLECULAR REPLACEMENT
25.8300
0.9000
1.1100
4HIK
Engh & Huber
FLAT BULK SOLVENT MODEL
28.9440
0.3160
2.0400
29.9510
93
1441
0
184
1164
0.008
1406
1.097
1941
0.076
202
0.004
215
16.845
531
0.3506
0.3077
2.1472
121
1082
1203
7
81.0000
0.2967
0.2821
2.2817
134
1207
1341
7
90.0000
0.3241
0.2492
2.4578
136
1217
1353
7
91.0000
0.3031
0.2584
2.7050
136
1251
1387
7
93.0000
0.2999
0.2430
3.0961
140
1264
1404
7
92.0000
0.2562
0.2024
3.8994
139
1245
1384
7
90.0000
0.2109
0.2018
29.9545
145
1297
1442
7
89.0000
2.0400
50.000
4HJ5
10598
9855
-3
-3
0.077
1.880
1
10.600
2.400
93.000
0.411
2.050
2.120
978
0.808
1
2.500
95.000
0.357
2.120
2.210
982
0.879
1
2.400
95.900
0.261
2.210
2.310
987
0.985
1
2.400
95.600
0.214
2.310
2.430
998
1.176
1
2.500
94.700
0.160
2.430
2.580
977
1.307
1
2.500
94.000
0.138
2.580
2.780
998
1.829
1
2.500
95.000
0.099
2.780
3.060
975
2.181
1
2.500
92.800
0.075
3.060
3.510
961
3.202
1
2.400
90.200
0.056
3.510
4.420
965
3.472
1
2.300
88.600
0.045
4.420
50.000
1034
3.441
1
2.200
89.100
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7_650
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
1.7_650
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTTCGGT)
1
N
N
2
N
N
3
N
N
3
N
N
A
LEU
7
A
LEU
7
HELX_P
A
ILE
11
A
ILE
11
5
1
5
A
TRP
72
A
TRP
72
HELX_P
A
ARG
80
A
ARG
80
1
2
9
A
ALA
113
A
ALA
113
HELX_P
A
ASN
117
A
ASN
117
5
3
5
A
GLU
127
A
GLU
127
HELX_P
A
GLU
129
A
GLU
129
5
4
3
A
LEU
130
A
LEU
130
HELX_P
A
ARG
138
A
ARG
138
1
5
9
DNA BINDING PROTEIN
specificity, plasticity, promiscuity, OB-fold, ssDNA-binding, single-stranded telomeric DNA, DNA BINDING PROTEIN
A
GLY
110
A
GLY
110
1
A
ASP
111
A
ASP
111
-18.86
POT1_SCHPO
UNP
1
198
O13988
SVSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRN
YIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN
4HJ5
PDB
2
4HJ5
198
339
4HJ5
2
143
O13988
A
1
2
143
1
9
4HJ5
1
9
4HJ5
B
2
1
9
1
expression tag
MET
1
4HJ5
A
O13988
UNP
1
1
VAL
engineered mutation
ASP
3
4HJ5
A
O13988
UNP
199
3
7
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
119
A
SER
119
A
VAL
123
A
VAL
123
A
TYR
88
A
TYR
88
A
ILE
98
A
ILE
98
A
LEU
104
A
LEU
104
A
LEU
108
A
LEU
108
A
ILE
67
A
ILE
67
A
LEU
71
A
LEU
71
A
PHE
33
A
PHE
33
A
THR
38
A
THR
38
A
ARG
16
A
ARG
16
A
TYR
28
A
TYR
28
A
TYR
88
A
TYR
88
A
ILE
98
A
ILE
98
19
P 21 21 21