0.005817
0.000000
0.002363
0.000000
0.024588
0.000000
0.000000
0.000000
0.014632
0.00000
0.00000
0.00000
Potter, J.A.
Owsianka, A.
Taylor, G.L.
Patel, A.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
112.11
90.00
171.910
40.670
73.770
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Virol.
JOVIAM
0825
0022-538X
86
12923
12932
10.1128/JVI.02052-12
22993159
Toward a Hepatitis C Virus Vaccine: the Structural Basis of Hepatitis C Virus Neutralization by AP33, a Broadly Neutralizing Antibody.
2012
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-11-02
RIGAKU SATURN 944
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007 HF
23677.420
NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN
1
nat
polymer
23921.352
NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN
1
nat
polymer
1667.867
Genome polyprotein
unp residues 94-107
1
syn
polymer
18.015
water
6
nat
water
no
no
EVQLQESGPSLVKPSQTLSLTCSVTGDSITSGYWNWIRKFPGNKLEYMGYISYSGSTYYNLSLRSRISITRDTSKNQYYL
QLNSVTTEDTATYYCALITTTTYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN
SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
EVQLQESGPSLVKPSQTLSLTCSVTGDSITSGYWNWIRKFPGNKLEYMGYISYSGSTYYNLSLRSRISITRDTSKNQYYL
QLNSVTTEDTATYYCALITTTTYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN
SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR
H
polypeptide(L)
no
no
NIVLTQSPVSLAVSLGQRATISCRASESVDGYGNSFLHWFQQKPGQPPKLLIYLASNLNSGVPARFSGSGSRTDFTLTID
PVEADDAATYYCQQNNVDPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
NIVLTQSPVSLAVSLGQRATISCRASESVDGYGNSFLHWFQQKPGQPPKLLIYLASNLNSGVPARFSGSGSRTDFTLTID
PVEADDAATYYCQQNNVDPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ
NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
no
IQLINTNGSWHINR
IQLINTNGSWHINR
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
10090
Mus musculus
sample
10090
Mus musculus
1
2.42
49.27
VAPOR DIFFUSION, SITTING DROP
8
18% PEG 8K, 0.1M TrisHCl, 0.2M CaCl2, VAPOR DIFFUSION, SITTING DROP, temperature 295K
295
audit_author
pdbx_unobs_or_zero_occ_atoms
repository
Initial release
Database references
Advisory
Structure summary
1
0
2012-10-10
1
1
2012-11-21
1
2
2018-01-24
_audit_author.name
RCSB
Y
RCSB
2012-07-25
REL
REL
HOH
water
11103
Hepatitis C virus
sample
HOH
1
4
HOH
HOH
301
H
HOH
2
4
HOH
HOH
302
H
HOH
5
4
HOH
HOH
303
H
HOH
30
4
HOH
HOH
304
H
HOH
3
4
HOH
HOH
301
L
HOH
14
4
HOH
HOH
302
L
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
SER
10
n
10
SER
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
SER
15
n
15
SER
15
H
GLN
16
n
16
GLN
16
H
THR
17
n
17
THR
17
H
LEU
18
n
18
LEU
18
H
SER
19
n
19
SER
19
H
LEU
20
n
20
LEU
20
H
THR
21
n
21
THR
21
H
CYS
22
n
22
CYS
22
H
SER
23
n
23
SER
23
H
VAL
24
n
24
VAL
24
H
THR
25
n
25
THR
25
H
GLY
26
n
26
GLY
26
H
ASP
27
n
27
ASP
27
H
n
28
28
H
n
29
29
H
THR
30
n
30
THR
30
H
SER
31
n
31
SER
31
H
GLY
32
n
32
GLY
32
H
TYR
33
n
33
TYR
33
H
TRP
34
n
34
TRP
34
H
ASN
35
n
35
ASN
35
H
TRP
36
n
36
TRP
36
H
ILE
37
n
37
ILE
37
H
ARG
38
n
38
ARG
38
H
LYS
39
n
39
LYS
39
H
PHE
40
n
40
PHE
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
ASN
43
n
43
ASN
43
H
LYS
44
n
44
LYS
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TYR
47
n
47
TYR
47
H
MET
48
n
48
MET
48
H
GLY
49
n
49
GLY
49
H
TYR
50
n
50
TYR
50
H
ILE
51
n
51
ILE
51
H
SER
52
n
52
SER
52
H
TYR
53
n
53
TYR
53
H
SER
54
n
54
SER
54
H
GLY
55
n
55
GLY
55
H
SER
56
n
56
SER
56
H
THR
57
n
57
THR
57
H
TYR
58
n
58
TYR
58
H
TYR
59
n
59
TYR
59
H
ASN
60
n
60
ASN
60
H
LEU
61
n
61
LEU
61
H
SER
62
n
62
SER
62
H
LEU
63
n
63
LEU
63
H
ARG
64
n
64
ARG
64
H
SER
65
n
65
SER
65
H
ARG
66
n
66
ARG
66
H
ILE
67
n
67
ILE
67
H
SER
68
n
68
SER
68
H
ILE
69
n
69
ILE
69
H
THR
70
n
70
THR
70
H
ARG
71
n
71
ARG
71
H
ASP
72
n
72
ASP
72
H
THR
73
n
73
THR
73
H
SER
74
n
74
SER
74
H
LYS
75
n
75
LYS
75
H
ASN
76
n
76
ASN
76
H
GLN
77
n
77
GLN
77
H
TYR
78
n
78
TYR
78
H
TYR
79
n
79
TYR
79
H
LEU
80
n
80
LEU
80
H
GLN
81
n
81
GLN
81
H
LEU
82
n
82
LEU
82
H
ASN
82
n
83
A
ASN
82
H
SER
82
n
84
B
SER
82
H
VAL
82
n
85
C
VAL
82
H
THR
83
n
86
THR
83
H
THR
84
n
87
THR
84
H
GLU
85
n
88
GLU
85
H
ASP
86
n
89
ASP
86
H
THR
87
n
90
THR
87
H
ALA
88
n
91
ALA
88
H
THR
89
n
92
THR
89
H
TYR
90
n
93
TYR
90
H
TYR
91
n
94
TYR
91
H
CYS
92
n
95
CYS
92
H
ALA
93
n
96
ALA
93
H
LEU
94
n
97
LEU
94
H
ILE
95
n
98
ILE
95
H
THR
96
n
99
THR
96
H
THR
97
n
100
THR
97
H
THR
98
n
101
THR
98
H
THR
99
n
102
THR
99
H
TYR
100
n
103
TYR
100
H
ALA
100
n
104
A
ALA
100
H
MET
100
n
105
B
MET
100
H
ASP
101
n
106
ASP
101
H
TYR
102
n
107
TYR
102
H
TRP
103
n
108
TRP
103
H
GLY
104
n
109
GLY
104
H
GLN
105
n
110
GLN
105
H
GLY
106
n
111
GLY
106
H
THR
107
n
112
THR
107
H
SER
108
n
113
SER
108
H
VAL
109
n
114
VAL
109
H
THR
110
n
115
THR
110
H
VAL
111
n
116
VAL
111
H
SER
112
n
117
SER
112
H
SER
113
n
118
SER
113
H
ALA
114
n
119
ALA
114
H
LYS
115
n
120
LYS
115
H
THR
116
n
121
THR
116
H
THR
117
n
122
THR
117
H
PRO
118
n
123
PRO
118
H
PRO
119
n
124
PRO
119
H
SER
120
n
125
SER
120
H
VAL
121
n
126
VAL
121
H
TYR
122
n
127
TYR
122
H
PRO
123
n
128
PRO
123
H
LEU
124
n
129
LEU
124
H
ALA
125
n
130
ALA
125
H
PRO
126
n
131
PRO
126
H
n
132
127
H
n
133
128
H
n
134
129
H
n
135
130
H
n
136
131
H
n
137
132
H
ASN
133
n
138
ASN
133
H
SER
134
n
139
SER
134
H
MET
135
n
140
MET
135
H
VAL
136
n
141
VAL
136
H
THR
137
n
142
THR
137
H
LEU
138
n
143
LEU
138
H
GLY
139
n
144
GLY
139
H
CYS
140
n
145
CYS
140
H
LEU
141
n
146
LEU
141
H
VAL
142
n
147
VAL
142
H
LYS
143
n
148
LYS
143
H
GLY
144
n
149
GLY
144
H
TYR
145
n
150
TYR
145
H
PHE
146
n
151
PHE
146
H
PRO
147
n
152
PRO
147
H
GLU
148
n
153
GLU
148
H
PRO
149
n
154
PRO
149
H
VAL
150
n
155
VAL
150
H
THR
151
n
156
THR
151
H
VAL
152
n
157
VAL
152
H
THR
153
n
158
THR
153
H
TRP
154
n
159
TRP
154
H
ASN
155
n
160
ASN
155
H
SER
156
n
161
SER
156
H
GLY
157
n
162
GLY
157
H
SER
158
n
163
SER
158
H
LEU
159
n
164
LEU
159
H
SER
160
n
165
SER
160
H
SER
161
n
166
SER
161
H
GLY
162
n
167
GLY
162
H
VAL
163
n
168
VAL
163
H
HIS
164
n
169
HIS
164
H
THR
165
n
170
THR
165
H
PHE
166
n
171
PHE
166
H
PRO
167
n
172
PRO
167
H
ALA
168
n
173
ALA
168
H
VAL
169
n
174
VAL
169
H
LEU
170
n
175
LEU
170
H
GLN
171
n
176
GLN
171
H
SER
172
n
177
SER
172
H
ASP
173
n
178
ASP
173
H
LEU
174
n
179
LEU
174
H
TYR
175
n
180
TYR
175
H
THR
176
n
181
THR
176
H
LEU
177
n
182
LEU
177
H
SER
178
n
183
SER
178
H
SER
179
n
184
SER
179
H
SER
180
n
185
SER
180
H
VAL
181
n
186
VAL
181
H
THR
182
n
187
THR
182
H
VAL
183
n
188
VAL
183
H
PRO
184
n
189
PRO
184
H
SER
185
n
190
SER
185
H
SER
186
n
191
SER
186
H
THR
187
n
192
THR
187
H
TRP
188
n
193
TRP
188
H
PRO
189
n
194
PRO
189
H
SER
190
n
195
SER
190
H
GLU
191
n
196
GLU
191
H
THR
192
n
197
THR
192
H
VAL
193
n
198
VAL
193
H
THR
194
n
199
THR
194
H
CYS
195
n
200
CYS
195
H
ASN
196
n
201
ASN
196
H
VAL
197
n
202
VAL
197
H
ALA
198
n
203
ALA
198
H
HIS
199
n
204
HIS
199
H
PRO
200
n
205
PRO
200
H
ALA
201
n
206
ALA
201
H
SER
202
n
207
SER
202
H
SER
203
n
208
SER
203
H
THR
204
n
209
THR
204
H
LYS
205
n
210
LYS
205
H
VAL
206
n
211
VAL
206
H
ASP
207
n
212
ASP
207
H
LYS
208
n
213
LYS
208
H
LYS
209
n
214
LYS
209
H
ILE
210
n
215
ILE
210
H
VAL
211
n
216
VAL
211
H
PRO
212
n
217
PRO
212
H
n
218
213
H
ASN
1
n
1
ASN
1
L
ILE
2
n
2
ILE
2
L
VAL
3
n
3
VAL
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
VAL
9
n
9
VAL
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
ALA
12
n
12
ALA
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
GLN
17
n
17
GLN
17
L
ARG
18
n
18
ARG
18
L
ALA
19
n
19
ALA
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
GLU
27
n
27
GLU
27
L
SER
27
n
28
A
SER
27
L
VAL
27
n
29
B
VAL
27
L
ASP
27
n
30
C
ASP
27
L
GLY
27
n
31
D
GLY
27
L
TYR
28
n
32
TYR
28
L
GLY
29
n
33
GLY
29
L
ASN
30
n
34
ASN
30
L
SER
31
n
35
SER
31
L
PHE
32
n
36
PHE
32
L
LEU
33
n
37
LEU
33
L
HIS
34
n
38
HIS
34
L
TRP
35
n
39
TRP
35
L
PHE
36
n
40
PHE
36
L
GLN
37
n
41
GLN
37
L
GLN
38
n
42
GLN
38
L
LYS
39
n
43
LYS
39
L
PRO
40
n
44
PRO
40
L
GLY
41
n
45
GLY
41
L
GLN
42
n
46
GLN
42
L
PRO
43
n
47
PRO
43
L
PRO
44
n
48
PRO
44
L
LYS
45
n
49
LYS
45
L
LEU
46
n
50
LEU
46
L
LEU
47
n
51
LEU
47
L
ILE
48
n
52
ILE
48
L
TYR
49
n
53
TYR
49
L
LEU
50
n
54
LEU
50
L
ALA
51
n
55
ALA
51
L
SER
52
n
56
SER
52
L
ASN
53
n
57
ASN
53
L
LEU
54
n
58
LEU
54
L
ASN
55
n
59
ASN
55
L
SER
56
n
60
SER
56
L
GLY
57
n
61
GLY
57
L
VAL
58
n
62
VAL
58
L
PRO
59
n
63
PRO
59
L
ALA
60
n
64
ALA
60
L
ARG
61
n
65
ARG
61
L
PHE
62
n
66
PHE
62
L
SER
63
n
67
SER
63
L
GLY
64
n
68
GLY
64
L
SER
65
n
69
SER
65
L
GLY
66
n
70
GLY
66
L
SER
67
n
71
SER
67
L
ARG
68
n
72
ARG
68
L
THR
69
n
73
THR
69
L
ASP
70
n
74
ASP
70
L
PHE
71
n
75
PHE
71
L
THR
72
n
76
THR
72
L
LEU
73
n
77
LEU
73
L
THR
74
n
78
THR
74
L
ILE
75
n
79
ILE
75
L
ASP
76
n
80
ASP
76
L
PRO
77
n
81
PRO
77
L
VAL
78
n
82
VAL
78
L
GLU
79
n
83
GLU
79
L
ALA
80
n
84
ALA
80
L
ASP
81
n
85
ASP
81
L
ASP
82
n
86
ASP
82
L
ALA
83
n
87
ALA
83
L
ALA
84
n
88
ALA
84
L
THR
85
n
89
THR
85
L
TYR
86
n
90
TYR
86
L
TYR
87
n
91
TYR
87
L
CYS
88
n
92
CYS
88
L
GLN
89
n
93
GLN
89
L
GLN
90
n
94
GLN
90
L
ASN
91
n
95
ASN
91
L
ASN
92
n
96
ASN
92
L
VAL
93
n
97
VAL
93
L
ASP
94
n
98
ASP
94
L
PRO
95
n
99
PRO
95
L
TRP
96
n
100
TRP
96
L
THR
97
n
101
THR
97
L
PHE
98
n
102
PHE
98
L
GLY
99
n
103
GLY
99
L
GLY
100
n
104
GLY
100
L
GLY
101
n
105
GLY
101
L
THR
102
n
106
THR
102
L
LYS
103
n
107
LYS
103
L
LEU
104
n
108
LEU
104
L
GLU
105
n
109
GLU
105
L
ILE
106
n
110
ILE
106
L
LYS
107
n
111
LYS
107
L
ARG
108
n
112
ARG
108
L
ALA
109
n
113
ALA
109
L
ASP
110
n
114
ASP
110
L
ALA
111
n
115
ALA
111
L
ALA
112
n
116
ALA
112
L
PRO
113
n
117
PRO
113
L
THR
114
n
118
THR
114
L
VAL
115
n
119
VAL
115
L
SER
116
n
120
SER
116
L
ILE
117
n
121
ILE
117
L
PHE
118
n
122
PHE
118
L
PRO
119
n
123
PRO
119
L
PRO
120
n
124
PRO
120
L
SER
121
n
125
SER
121
L
SER
122
n
126
SER
122
L
GLU
123
n
127
GLU
123
L
GLN
124
n
128
GLN
124
L
LEU
125
n
129
LEU
125
L
THR
126
n
130
THR
126
L
SER
127
n
131
SER
127
L
GLY
128
n
132
GLY
128
L
GLY
129
n
133
GLY
129
L
ALA
130
n
134
ALA
130
L
SER
131
n
135
SER
131
L
VAL
132
n
136
VAL
132
L
VAL
133
n
137
VAL
133
L
CYS
134
n
138
CYS
134
L
PHE
135
n
139
PHE
135
L
LEU
136
n
140
LEU
136
L
ASN
137
n
141
ASN
137
L
ASN
138
n
142
ASN
138
L
PHE
139
n
143
PHE
139
L
TYR
140
n
144
TYR
140
L
PRO
141
n
145
PRO
141
L
LYS
142
n
146
LYS
142
L
ASP
143
n
147
ASP
143
L
ILE
144
n
148
ILE
144
L
ASN
145
n
149
ASN
145
L
VAL
146
n
150
VAL
146
L
LYS
147
n
151
LYS
147
L
TRP
148
n
152
TRP
148
L
LYS
149
n
153
LYS
149
L
ILE
150
n
154
ILE
150
L
ASP
151
n
155
ASP
151
L
GLY
152
n
156
GLY
152
L
SER
153
n
157
SER
153
L
GLU
154
n
158
GLU
154
L
ARG
155
n
159
ARG
155
L
GLN
156
n
160
GLN
156
L
ASN
157
n
161
ASN
157
L
GLY
158
n
162
GLY
158
L
VAL
159
n
163
VAL
159
L
LEU
160
n
164
LEU
160
L
ASN
161
n
165
ASN
161
L
SER
162
n
166
SER
162
L
TRP
163
n
167
TRP
163
L
THR
164
n
168
THR
164
L
ASP
165
n
169
ASP
165
L
GLN
166
n
170
GLN
166
L
ASP
167
n
171
ASP
167
L
SER
168
n
172
SER
168
L
LYS
169
n
173
LYS
169
L
ASP
170
n
174
ASP
170
L
SER
171
n
175
SER
171
L
THR
172
n
176
THR
172
L
TYR
173
n
177
TYR
173
L
SER
174
n
178
SER
174
L
MET
175
n
179
MET
175
L
SER
176
n
180
SER
176
L
SER
177
n
181
SER
177
L
THR
178
n
182
THR
178
L
LEU
179
n
183
LEU
179
L
THR
180
n
184
THR
180
L
LEU
181
n
185
LEU
181
L
THR
182
n
186
THR
182
L
LYS
183
n
187
LYS
183
L
ASP
184
n
188
ASP
184
L
GLU
185
n
189
GLU
185
L
TYR
186
n
190
TYR
186
L
GLU
187
n
191
GLU
187
L
ARG
188
n
192
ARG
188
L
HIS
189
n
193
HIS
189
L
ASN
190
n
194
ASN
190
L
SER
191
n
195
SER
191
L
TYR
192
n
196
TYR
192
L
THR
193
n
197
THR
193
L
CYS
194
n
198
CYS
194
L
GLU
195
n
199
GLU
195
L
ALA
196
n
200
ALA
196
L
THR
197
n
201
THR
197
L
HIS
198
n
202
HIS
198
L
LYS
199
n
203
LYS
199
L
THR
200
n
204
THR
200
L
SER
201
n
205
SER
201
L
THR
202
n
206
THR
202
L
SER
203
n
207
SER
203
L
PRO
204
n
208
PRO
204
L
ILE
205
n
209
ILE
205
L
VAL
206
n
210
VAL
206
L
LYS
207
n
211
LYS
207
L
SER
208
n
212
SER
208
L
PHE
209
n
213
PHE
209
L
ASN
210
n
214
ASN
210
L
ARG
211
n
215
ARG
211
L
n
216
212
L
n
217
213
L
n
218
214
L
n
1
411
P
n
2
412
P
LEU
413
n
3
LEU
413
P
ILE
414
n
4
ILE
414
P
ASN
415
n
5
ASN
415
P
THR
416
n
6
THR
416
P
ASN
417
n
7
ASN
417
P
GLY
418
n
8
GLY
418
P
SER
419
n
9
SER
419
P
TRP
420
n
10
TRP
420
P
HIS
421
n
11
HIS
421
P
ILE
422
n
12
ILE
422
P
n
13
423
P
n
14
424
P
author_and_software_defined_assembly
PISA
3
trimeric
4590
-33
19420
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
SER
7
A
N
SER
7
H
O
THR
21
A
O
THR
21
H
N
CYS
22
A
N
CYS
22
H
O
TYR
78
A
O
TYR
78
H
O
TYR
79
A
O
TYR
79
H
N
THR
70
A
N
THR
70
H
N
VAL
12
A
N
VAL
12
H
O
THR
110
A
O
THR
115
H
O
THR
107
A
O
THR
112
H
N
TYR
90
A
N
TYR
93
H
O
TYR
91
A
O
TYR
94
H
N
ILE
37
A
N
ILE
37
H
N
ARG
38
A
N
ARG
38
H
O
GLU
46
A
O
GLU
46
H
N
TYR
50
A
N
TYR
50
H
O
TYR
58
A
O
TYR
58
H
N
VAL
12
A
N
VAL
12
H
O
THR
110
A
O
THR
115
H
O
THR
107
A
O
THR
112
H
N
TYR
90
A
N
TYR
93
H
N
LEU
94
A
N
LEU
97
H
O
TYR
102
A
O
TYR
107
H
N
SER
120
A
N
SER
125
H
O
LYS
143
A
O
LYS
148
H
N
TYR
145
A
N
TYR
150
H
O
TYR
175
A
O
TYR
180
H
O
SER
180
A
O
SER
185
H
N
HIS
164
A
N
HIS
169
H
N
SER
120
A
N
SER
125
H
O
LYS
143
A
O
LYS
148
H
N
TYR
145
A
N
TYR
150
H
O
TYR
175
A
O
TYR
180
H
O
LEU
174
A
O
LEU
179
H
N
GLN
171
A
N
GLN
176
H
N
THR
151
A
N
THR
156
H
O
ALA
198
A
O
ALA
203
H
N
VAL
197
A
N
VAL
202
H
O
VAL
206
A
O
VAL
211
L
N
SER
7
B
N
SER
7
L
O
SER
22
B
O
SER
22
L
N
ILE
21
B
N
ILE
21
L
O
LEU
73
B
O
LEU
77
L
O
THR
72
B
O
THR
76
L
N
SER
65
B
N
SER
69
L
N
VAL
13
B
N
VAL
13
L
O
LYS
107
B
O
LYS
111
L
O
LEU
104
B
O
LEU
108
L
N
ALA
84
B
N
ALA
88
L
O
THR
85
B
O
THR
89
L
N
GLN
38
B
N
GLN
42
L
N
TRP
35
B
N
TRP
39
L
O
LEU
47
B
O
LEU
51
L
N
TYR
49
B
N
TYR
53
L
O
ASN
53
B
O
ASN
57
L
N
VAL
13
B
N
VAL
13
L
O
LYS
107
B
O
LYS
111
L
O
LEU
104
B
O
LEU
108
L
N
ALA
84
B
N
ALA
88
L
N
GLN
90
B
N
GLN
94
L
O
THR
97
B
O
THR
101
L
N
SER
116
B
N
SER
120
L
O
PHE
135
B
O
PHE
139
L
N
CYS
134
B
N
CYS
138
L
O
SER
177
B
O
SER
181
L
O
THR
178
B
O
THR
182
L
N
LEU
160
B
N
LEU
164
L
N
LYS
147
B
N
LYS
151
L
O
GLU
195
B
O
GLU
199
L
N
ALA
196
B
N
ALA
200
L
O
ILE
205
B
O
ILE
209
P
N
THR
416
C
N
THR
6
P
O
SER
419
C
O
SER
9
1
H
SER
28
A
SER
28
1
Y
1
H
ILE
29
A
ILE
29
1
Y
1
H
GLY
127
A
GLY
132
1
Y
1
H
SER
128
A
SER
133
1
Y
1
H
ALA
129
A
ALA
134
1
Y
1
H
ALA
130
A
ALA
135
1
Y
1
H
GLN
131
A
GLN
136
1
Y
1
H
THR
132
A
THR
137
1
Y
1
H
ARG
213
A
ARG
218
1
Y
1
L
ASN
212
B
ASN
216
1
Y
1
L
GLU
213
B
GLU
217
1
Y
1
L
CYS
214
B
CYS
218
1
Y
1
P
ILE
411
C
ILE
1
1
Y
1
P
GLN
412
C
GLN
2
1
Y
1
P
ASN
423
C
ASN
13
1
Y
1
P
ARG
424
C
ARG
14
1
Y
1
15.11
2.30
115.30
130.41
H
H
H
CA
CB
CG
LEU
LEU
LEU
18
18
18
N
1
H
SER
15
72.16
-6.82
1
H
ASN
43
94.33
-12.46
1
H
ALA
88
179.27
163.53
1
H
LEU
124
-112.71
77.12
1
H
SER
156
28.65
38.30
1
L
LEU
15
-67.92
94.30
1
L
GLN
17
-63.93
-173.18
1
L
GLU
27
160.82
151.41
1
L
ALA
51
87.32
-38.89
1
L
SER
52
-157.59
12.29
1
L
ARG
68
58.43
-83.43
1
L
ASP
76
-171.98
104.61
1
L
ALA
84
174.82
165.19
1
L
ASP
110
-45.79
150.07
1
L
SER
176
-161.40
98.32
1
L
ASP
184
-92.09
-66.53
1
L
GLU
185
-46.86
-10.81
1
L
THR
200
-41.97
-19.99
1
L
PRO
204
-48.47
154.46
1
P
ASN
417
36.93
44.52
46.435
1.31
0.00
1.04
0.13
0.00
-0.66
0.921
0.866
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.31983
0.24015
0.24405
2.51
20.00
815
15613
15613
5.0
99.33
11.941
0.275
RANDOM
1
THROUGHOUT
2
MOLECULAR REPLACEMENT
0.772
0.380
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
2.51
20.00
6
3349
0
0
3343
0.016
0.022
3459
1.682
1.947
4739
8.029
5.000
441
38.887
24.485
136
19.691
15.000
541
20.500
15.000
12
0.103
0.200
545
0.008
0.021
2600
0.825
1.500
2182
1.534
2.000
3568
1.974
3.000
1275
3.269
4.500
1161
0.494
0.366
2.573
50
1076
20
93.60
2.5
50
4GAJ
16538
16538
2
2
1
99.3
2.5
2.64
1
96.8
data collection
CrystalClear
phasing
PHASER
refinement
REFMAC
5.5.0109
data reduction
MOSFLM
data scaling
SCALA
Protein: AP33 chain H, Protein: AP33 chain L, Genome polyprotein
Structure of the broadly neutralizing antibody AP33 in complex with its HCV epitope (E2 residues 411-424)
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
H
THR
83
A
THR
86
HELX_P
H
THR
87
A
THR
90
5
1
5
H
SER
156
A
SER
161
HELX_P
H
SER
158
A
SER
163
5
2
3
H
SER
186
A
SER
191
HELX_P
H
TRP
188
A
TRP
193
5
3
3
L
GLU
79
B
GLU
83
HELX_P
L
ALA
83
B
ALA
87
5
4
5
L
THR
182
B
THR
186
HELX_P
L
ARG
188
B
ARG
192
1
5
7
disulf
2.077
H
CYS
22
A
SG
CYS
22
1_555
H
CYS
92
A
SG
CYS
95
1_555
disulf
2.036
H
CYS
140
A
SG
CYS
145
1_555
H
CYS
195
A
SG
CYS
200
1_555
disulf
2.106
L
CYS
23
B
SG
CYS
23
1_555
L
CYS
88
B
SG
CYS
92
1_555
disulf
2.035
A
A
L
CYS
134
B
SG
CYS
138
1_555
L
CYS
194
B
SG
CYS
198
1_555
disulf
2.041
B
B
L
CYS
134
B
SG
CYS
138
1_555
L
CYS
194
B
SG
CYS
198
1_555
IMMUNE SYSTEM
antibody Fab, neutralizing antibody, HCV E2 binding, IMMUNE SYSTEM
H
PHE
146
A
PHE
151
1
H
PRO
147
A
PRO
152
-1.04
H
GLU
148
A
GLU
153
1
H
PRO
149
A
PRO
154
-2.81
H
TRP
188
A
TRP
193
1
H
PRO
189
A
PRO
194
16.47
L
SER
7
B
SER
7
1
L
PRO
8
B
PRO
8
-9.14
L
ASP
76
B
ASP
80
1
L
PRO
77
B
PRO
81
3.68
L
ASP
94
B
ASP
98
1
L
PRO
95
B
PRO
99
0.34
L
TYR
140
B
TYR
144
1
L
PRO
141
B
PRO
145
2.39
Q9IY15_9HEPC
UNP
3
94
Q9IY15
IQLINTNGSWHINR
4GAJ
PDB
1
4GAJ
4GAJ
PDB
2
4GAJ
94
107
4GAJ
411
424
Q9IY15
P
1
1
14
1
213
4GAJ
1
213
4GAJ
H
2
1
218
1
214
4GAJ
1
214
4GAJ
L
3
1
218
4
6
4
4
4
3
4
6
4
4
3
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLN
3
A
GLN
3
H
SER
7
A
SER
7
H
LEU
18
A
LEU
18
H
THR
25
A
THR
25
H
GLN
77
A
GLN
77
H
LEU
82
A
LEU
82
H
ILE
67
A
ILE
67
H
ASP
72
A
ASP
72
H
LEU
11
A
LEU
11
H
VAL
12
A
VAL
12
H
THR
107
A
THR
112
H
VAL
111
A
VAL
116
H
ALA
88
A
ALA
91
H
ILE
95
A
ILE
98
H
TYR
33
A
TYR
33
H
LYS
39
A
LYS
39
H
LEU
45
A
LEU
45
H
SER
52
A
SER
52
H
THR
57
A
THR
57
H
TYR
59
A
TYR
59
H
LEU
11
A
LEU
11
H
VAL
12
A
VAL
12
H
THR
107
A
THR
112
H
VAL
111
A
VAL
116
H
ALA
88
A
ALA
91
H
ILE
95
A
ILE
98
H
MET
100
A
MET
105
H
TRP
103
A
TRP
108
B
H
SER
120
A
SER
125
H
PRO
123
A
PRO
128
H
MET
135
A
MET
140
H
TYR
145
A
TYR
150
H
LEU
174
A
LEU
179
H
PRO
184
A
PRO
189
H
VAL
163
A
VAL
168
H
THR
165
A
THR
170
H
SER
120
A
SER
125
H
PRO
123
A
PRO
128
H
MET
135
A
MET
140
H
TYR
145
A
TYR
150
H
LEU
174
A
LEU
179
H
PRO
184
A
PRO
189
H
VAL
169
A
VAL
174
H
GLN
171
A
GLN
176
H
THR
151
A
THR
156
H
TRP
154
A
TRP
159
H
THR
194
A
THR
199
H
ALA
198
A
ALA
203
H
LYS
205
A
LYS
210
H
LYS
209
A
LYS
214
L
LEU
4
B
LEU
4
L
SER
7
B
SER
7
L
ALA
19
B
ALA
19
L
ALA
25
B
ALA
25
L
ASP
70
B
ASP
74
L
ILE
75
B
ILE
79
L
PHE
62
B
PHE
66
L
SER
67
B
SER
71
L
SER
10
B
SER
10
L
SER
14
B
SER
14
L
THR
102
B
THR
106
L
LYS
107
B
LYS
111
L
ALA
84
B
ALA
88
L
GLN
90
B
GLN
94
L
LEU
33
B
LEU
37
L
GLN
38
B
GLN
42
L
LYS
45
B
LYS
49
L
TYR
49
B
TYR
53
L
ASN
53
B
ASN
57
L
LEU
54
B
LEU
58
L
SER
10
B
SER
10
L
SER
14
B
SER
14
L
THR
102
B
THR
106
L
LYS
107
B
LYS
111
L
ALA
84
B
ALA
88
L
GLN
90
B
GLN
94
L
THR
97
B
THR
101
L
PHE
98
B
PHE
102
L
THR
114
B
THR
118
L
PHE
118
B
PHE
122
L
ALA
130
B
ALA
134
L
PHE
139
B
PHE
143
L
TYR
173
B
TYR
177
L
LEU
181
B
LEU
185
L
VAL
159
B
VAL
163
L
ASN
161
B
ASN
165
L
VAL
146
B
VAL
150
L
ILE
150
B
ILE
154
L
SER
191
B
SER
195
L
ALA
196
B
ALA
200
L
ILE
205
B
ILE
209
L
ASN
210
B
ASN
214
P
ILE
414
C
ILE
4
P
THR
416
C
THR
6
P
SER
419
C
SER
9
P
HIS
421
C
HIS
11
5
C 1 2 1