0.015226
0.000000
0.000000
0.000000
0.011694
0.000000
0.000000
0.000000
0.021588
0.00000
0.00000
0.00000
Farah, C.S.
Guzzo, C.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
65.676
85.515
46.323
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C20 H24 N10 O14 P2
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
c-di-GMP; Cyclic diguanosine monophosphate
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
P
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
C
N
102
R
C
N
103
N
O
N
104
S
C
N
105
N
O
N
106
R
C
N
107
N
O
N
108
R
C
Y
109
N
N
Y
110
N
C
Y
111
N
N
Y
112
N
C
N
113
N
C
N
114
N
O
N
115
N
N
N
116
N
C
N
117
N
N
N
118
N
N
Y
119
N
C
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
S
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
N
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
O
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
Y
226
N
C
Y
227
N
N
Y
228
N
C
Y
229
N
C
Y
230
N
N
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
S
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
N
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
S
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
R
C
N
393
N
O
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
N
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
sing
Y
85
N
sing
Y
86
N
doub
Y
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
Y
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
sing
Y
111
N
doub
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
Y
229
N
sing
Y
230
N
doub
Y
231
N
doub
N
232
N
sing
Y
233
N
sing
N
234
N
sing
Y
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
Y
434
N
doub
Y
435
N
sing
Y
436
N
sing
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
2174
2197
10.1016/j.jmb.2013.03.021
23507310
Structure of the PilZ-FimXEAL-c-di-GMP Complex Responsible for the Regulation of Bacterial Type IV Pilus Biogenesis.
2013
10.2210/pdb4fok/pdb
pdb_00004fok
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-03-30
MAR CCD 165 mm
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.437
1.0
D03B-MX1
LNLS
1.437
SYNCHROTRON
LNLS BEAMLINE D03B-MX1
29612.451
FimX
EAL domain (UNP residues 426-689)
1
man
polymer
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
1
syn
non-polymer
92.094
GLYCEROL
8
syn
non-polymer
18.015
water
203
nat
water
no
no
VSIYDPAAADRAEEERIERWVEQLREALVGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLVT
EIDRWVVARAIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLAA
VSAMDCKVGLEQFGSGLDSFQLLAHFHPAFLKLDRGITGDIASARDSQEKIREITSRAQPAGILTMAEFVADAQSMSSFF
SAGVDYVQGDFVAPTGPLMNYEFG
VSIYDPAAADRAEEERIERWVEQLREALVGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLVT
EIDRWVVARAIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLAA
VSAMDCKVGLEQFGSGLDSFQLLAHFHPAFLKLDRGITGDIASARDSQEKIREITSRAQPAGILTMAEFVADAQSMSSFF
SAGVDYVQGDFVAPTGPLMNYEFG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
306
sample
XAC2398
190486
Xanthomonas axonopodis pv. citri
469008
Escherichia coli
BL21(DE3)pLysS
plasmid
pET3a
1
2.20
44.00
VAPOR DIFFUSION, SITTING DROP
4.7
0.6 M amonium sulfate, 0.1 M sodium citrate, pH 4.7, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Structure summary
1
0
2013-03-27
1
1
2013-04-03
1
2
2013-06-12
1
3
2024-02-28
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Xanthomonas axonopodis pv citri PilZ (XAC1133)
1.55 A crystal Structure of Xanthomonas citri FimX EAL domain in complex with c-diGMP
2.1 A crystal structure of PilZ-FimX(EAL domain) in complex with c-diGMP
RCSB
Y
RCSB
2012-06-20
REL
REL
C2E
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
GOL
GLYCEROL
HOH
water
C2E
1
2
C2E
C2E
701
A
GOL
2
3
GOL
GOL
702
A
GOL
1
3
GOL
GOL
703
A
GOL
3
3
GOL
GOL
704
A
GOL
7
3
GOL
GOL
705
A
GOL
4
3
GOL
GOL
706
A
GOL
5
3
GOL
GOL
707
A
GOL
6
3
GOL
GOL
708
A
GOL
8
3
GOL
GOL
709
A
HOH
1
4
HOH
HOH
801
A
HOH
2
4
HOH
HOH
802
A
HOH
3
4
HOH
HOH
803
A
HOH
4
4
HOH
HOH
804
A
HOH
5
4
HOH
HOH
805
A
HOH
6
4
HOH
HOH
806
A
HOH
9
4
HOH
HOH
807
A
HOH
10
4
HOH
HOH
808
A
HOH
12
4
HOH
HOH
809
A
HOH
13
4
HOH
HOH
810
A
HOH
14
4
HOH
HOH
811
A
HOH
15
4
HOH
HOH
812
A
HOH
16
4
HOH
HOH
813
A
HOH
17
4
HOH
HOH
814
A
HOH
19
4
HOH
HOH
815
A
HOH
20
4
HOH
HOH
816
A
HOH
21
4
HOH
HOH
817
A
HOH
23
4
HOH
HOH
818
A
HOH
24
4
HOH
HOH
819
A
HOH
26
4
HOH
HOH
820
A
HOH
27
4
HOH
HOH
821
A
HOH
28
4
HOH
HOH
822
A
HOH
29
4
HOH
HOH
823
A
HOH
30
4
HOH
HOH
824
A
HOH
31
4
HOH
HOH
825
A
HOH
32
4
HOH
HOH
826
A
HOH
33
4
HOH
HOH
827
A
HOH
34
4
HOH
HOH
828
A
HOH
35
4
HOH
HOH
829
A
HOH
36
4
HOH
HOH
830
A
HOH
37
4
HOH
HOH
831
A
HOH
38
4
HOH
HOH
832
A
HOH
39
4
HOH
HOH
833
A
HOH
40
4
HOH
HOH
834
A
HOH
41
4
HOH
HOH
835
A
HOH
42
4
HOH
HOH
836
A
HOH
43
4
HOH
HOH
837
A
HOH
44
4
HOH
HOH
838
A
HOH
45
4
HOH
HOH
839
A
HOH
46
4
HOH
HOH
840
A
HOH
47
4
HOH
HOH
841
A
HOH
48
4
HOH
HOH
842
A
HOH
50
4
HOH
HOH
843
A
HOH
51
4
HOH
HOH
844
A
HOH
52
4
HOH
HOH
845
A
HOH
53
4
HOH
HOH
846
A
HOH
54
4
HOH
HOH
847
A
HOH
56
4
HOH
HOH
848
A
HOH
57
4
HOH
HOH
849
A
HOH
58
4
HOH
HOH
850
A
HOH
59
4
HOH
HOH
851
A
HOH
60
4
HOH
HOH
852
A
HOH
62
4
HOH
HOH
853
A
HOH
63
4
HOH
HOH
854
A
HOH
64
4
HOH
HOH
855
A
HOH
65
4
HOH
HOH
856
A
HOH
66
4
HOH
HOH
857
A
HOH
69
4
HOH
HOH
858
A
HOH
70
4
HOH
HOH
859
A
HOH
73
4
HOH
HOH
860
A
HOH
74
4
HOH
HOH
861
A
HOH
75
4
HOH
HOH
862
A
HOH
76
4
HOH
HOH
863
A
HOH
79
4
HOH
HOH
864
A
HOH
85
4
HOH
HOH
865
A
HOH
87
4
HOH
HOH
866
A
HOH
88
4
HOH
HOH
867
A
HOH
89
4
HOH
HOH
868
A
HOH
90
4
HOH
HOH
869
A
HOH
92
4
HOH
HOH
870
A
HOH
93
4
HOH
HOH
871
A
HOH
94
4
HOH
HOH
872
A
HOH
95
4
HOH
HOH
873
A
HOH
98
4
HOH
HOH
874
A
HOH
99
4
HOH
HOH
875
A
HOH
100
4
HOH
HOH
876
A
HOH
103
4
HOH
HOH
877
A
HOH
104
4
HOH
HOH
878
A
HOH
105
4
HOH
HOH
879
A
HOH
106
4
HOH
HOH
880
A
HOH
107
4
HOH
HOH
881
A
HOH
108
4
HOH
HOH
882
A
HOH
109
4
HOH
HOH
883
A
HOH
110
4
HOH
HOH
884
A
HOH
111
4
HOH
HOH
885
A
HOH
112
4
HOH
HOH
886
A
HOH
113
4
HOH
HOH
887
A
HOH
114
4
HOH
HOH
888
A
HOH
115
4
HOH
HOH
889
A
HOH
116
4
HOH
HOH
890
A
HOH
117
4
HOH
HOH
891
A
HOH
118
4
HOH
HOH
892
A
HOH
119
4
HOH
HOH
893
A
HOH
120
4
HOH
HOH
894
A
HOH
121
4
HOH
HOH
895
A
HOH
122
4
HOH
HOH
896
A
HOH
124
4
HOH
HOH
897
A
HOH
125
4
HOH
HOH
898
A
HOH
126
4
HOH
HOH
899
A
HOH
127
4
HOH
HOH
900
A
HOH
128
4
HOH
HOH
901
A
HOH
129
4
HOH
HOH
902
A
HOH
130
4
HOH
HOH
903
A
HOH
131
4
HOH
HOH
904
A
HOH
132
4
HOH
HOH
905
A
HOH
133
4
HOH
HOH
906
A
HOH
134
4
HOH
HOH
907
A
HOH
135
4
HOH
HOH
908
A
HOH
136
4
HOH
HOH
909
A
HOH
137
4
HOH
HOH
910
A
HOH
138
4
HOH
HOH
911
A
HOH
139
4
HOH
HOH
912
A
HOH
140
4
HOH
HOH
913
A
HOH
141
4
HOH
HOH
914
A
HOH
142
4
HOH
HOH
915
A
HOH
143
4
HOH
HOH
916
A
HOH
144
4
HOH
HOH
917
A
HOH
145
4
HOH
HOH
918
A
HOH
146
4
HOH
HOH
919
A
HOH
147
4
HOH
HOH
920
A
HOH
148
4
HOH
HOH
921
A
HOH
149
4
HOH
HOH
922
A
HOH
150
4
HOH
HOH
923
A
HOH
151
4
HOH
HOH
924
A
HOH
152
4
HOH
HOH
925
A
HOH
153
4
HOH
HOH
926
A
HOH
154
4
HOH
HOH
927
A
HOH
155
4
HOH
HOH
928
A
HOH
156
4
HOH
HOH
929
A
HOH
157
4
HOH
HOH
930
A
HOH
158
4
HOH
HOH
931
A
HOH
162
4
HOH
HOH
932
A
HOH
164
4
HOH
HOH
933
A
HOH
165
4
HOH
HOH
934
A
HOH
166
4
HOH
HOH
935
A
HOH
167
4
HOH
HOH
936
A
HOH
168
4
HOH
HOH
937
A
HOH
169
4
HOH
HOH
938
A
HOH
170
4
HOH
HOH
939
A
HOH
171
4
HOH
HOH
940
A
HOH
174
4
HOH
HOH
941
A
HOH
177
4
HOH
HOH
942
A
HOH
179
4
HOH
HOH
943
A
HOH
182
4
HOH
HOH
944
A
HOH
183
4
HOH
HOH
945
A
HOH
184
4
HOH
HOH
946
A
HOH
185
4
HOH
HOH
947
A
HOH
186
4
HOH
HOH
948
A
HOH
187
4
HOH
HOH
949
A
HOH
188
4
HOH
HOH
950
A
HOH
191
4
HOH
HOH
951
A
HOH
197
4
HOH
HOH
952
A
HOH
198
4
HOH
HOH
953
A
HOH
199
4
HOH
HOH
954
A
HOH
201
4
HOH
HOH
955
A
HOH
203
4
HOH
HOH
956
A
HOH
205
4
HOH
HOH
957
A
HOH
206
4
HOH
HOH
958
A
HOH
207
4
HOH
HOH
959
A
HOH
208
4
HOH
HOH
960
A
HOH
209
4
HOH
HOH
961
A
HOH
210
4
HOH
HOH
962
A
HOH
212
4
HOH
HOH
963
A
HOH
215
4
HOH
HOH
964
A
HOH
217
4
HOH
HOH
965
A
HOH
218
4
HOH
HOH
966
A
HOH
220
4
HOH
HOH
967
A
HOH
221
4
HOH
HOH
968
A
HOH
222
4
HOH
HOH
969
A
HOH
223
4
HOH
HOH
970
A
HOH
224
4
HOH
HOH
971
A
HOH
225
4
HOH
HOH
972
A
HOH
231
4
HOH
HOH
973
A
HOH
234
4
HOH
HOH
974
A
HOH
235
4
HOH
HOH
975
A
HOH
236
4
HOH
HOH
976
A
HOH
238
4
HOH
HOH
977
A
HOH
239
4
HOH
HOH
978
A
HOH
241
4
HOH
HOH
979
A
HOH
242
4
HOH
HOH
980
A
HOH
243
4
HOH
HOH
981
A
HOH
244
4
HOH
HOH
982
A
HOH
246
4
HOH
HOH
983
A
HOH
247
4
HOH
HOH
984
A
HOH
250
4
HOH
HOH
985
A
HOH
252
4
HOH
HOH
986
A
HOH
256
4
HOH
HOH
987
A
HOH
257
4
HOH
HOH
988
A
HOH
258
4
HOH
HOH
989
A
HOH
260
4
HOH
HOH
990
A
HOH
263
4
HOH
HOH
991
A
HOH
264
4
HOH
HOH
992
A
HOH
265
4
HOH
HOH
993
A
HOH
266
4
HOH
HOH
994
A
HOH
267
4
HOH
HOH
995
A
HOH
268
4
HOH
HOH
996
A
HOH
269
4
HOH
HOH
997
A
HOH
270
4
HOH
HOH
998
A
HOH
271
4
HOH
HOH
999
A
HOH
272
4
HOH
HOH
1000
A
HOH
273
4
HOH
HOH
1001
A
HOH
274
4
HOH
HOH
1002
A
HOH
275
4
HOH
HOH
1003
A
VAL
426
n
1
VAL
426
A
SER
427
n
2
SER
427
A
ILE
428
n
3
ILE
428
A
TYR
429
n
4
TYR
429
A
ASP
430
n
5
ASP
430
A
PRO
431
n
6
PRO
431
A
ALA
432
n
7
ALA
432
A
ALA
433
n
8
ALA
433
A
ALA
434
n
9
ALA
434
A
ASP
435
n
10
ASP
435
A
ARG
436
n
11
ARG
436
A
ALA
437
n
12
ALA
437
A
GLU
438
n
13
GLU
438
A
GLU
439
n
14
GLU
439
A
GLU
440
n
15
GLU
440
A
ARG
441
n
16
ARG
441
A
ILE
442
n
17
ILE
442
A
GLU
443
n
18
GLU
443
A
ARG
444
n
19
ARG
444
A
TRP
445
n
20
TRP
445
A
VAL
446
n
21
VAL
446
A
GLU
447
n
22
GLU
447
A
GLN
448
n
23
GLN
448
A
LEU
449
n
24
LEU
449
A
ARG
450
n
25
ARG
450
A
GLU
451
n
26
GLU
451
A
ALA
452
n
27
ALA
452
A
LEU
453
n
28
LEU
453
A
VAL
454
n
29
VAL
454
A
GLY
455
n
30
GLY
455
A
ASP
456
n
31
ASP
456
A
GLY
457
n
32
GLY
457
A
PHE
458
n
33
PHE
458
A
LEU
459
n
34
LEU
459
A
LEU
460
n
35
LEU
460
A
HIS
461
n
36
HIS
461
A
TYR
462
n
37
TYR
462
A
GLN
463
n
38
GLN
463
A
PRO
464
n
39
PRO
464
A
VAL
465
n
40
VAL
465
A
LEU
466
n
41
LEU
466
A
ASN
467
n
42
ASN
467
A
LEU
468
n
43
LEU
468
A
GLN
469
n
44
GLN
469
A
GLY
470
n
45
GLY
470
A
GLU
471
n
46
GLU
471
A
PRO
472
n
47
PRO
472
A
LEU
473
n
48
LEU
473
A
GLU
474
n
49
GLU
474
A
LEU
475
n
50
LEU
475
A
TYR
476
n
51
TYR
476
A
GLN
477
n
52
GLN
477
A
ALA
478
n
53
ALA
478
A
PHE
479
n
54
PHE
479
A
LEU
480
n
55
LEU
480
A
ARG
481
n
56
ARG
481
A
LEU
482
n
57
LEU
482
A
GLU
483
n
58
GLU
483
A
ARG
484
n
59
ARG
484
A
ASN
485
n
60
ASN
485
A
GLY
486
n
61
GLY
486
A
GLU
487
n
62
GLU
487
A
MET
488
n
63
MET
488
A
MET
489
n
64
MET
489
A
SER
490
n
65
SER
490
A
PRO
491
n
66
PRO
491
A
ASN
492
n
67
ASN
492
A
ALA
493
n
68
ALA
493
A
PHE
494
n
69
PHE
494
A
MET
495
n
70
MET
495
A
ALA
496
n
71
ALA
496
A
ILE
497
n
72
ILE
497
A
ALA
498
n
73
ALA
498
A
GLU
499
n
74
GLU
499
A
GLU
500
n
75
GLU
500
A
HIS
501
n
76
HIS
501
A
ASP
502
n
77
ASP
502
A
LEU
503
n
78
LEU
503
A
VAL
504
n
79
VAL
504
A
THR
505
n
80
THR
505
A
GLU
506
n
81
GLU
506
A
ILE
507
n
82
ILE
507
A
ASP
508
n
83
ASP
508
A
ARG
509
n
84
ARG
509
A
TRP
510
n
85
TRP
510
A
VAL
511
n
86
VAL
511
A
VAL
512
n
87
VAL
512
A
ALA
513
n
88
ALA
513
A
ARG
514
n
89
ARG
514
A
ALA
515
n
90
ALA
515
A
ILE
516
n
91
ILE
516
A
ARG
517
n
92
ARG
517
A
GLN
518
n
93
GLN
518
A
LEU
519
n
94
LEU
519
A
GLY
520
n
95
GLY
520
A
GLU
521
n
96
GLU
521
A
ARG
522
n
97
ARG
522
A
GLN
523
n
98
GLN
523
A
ARG
524
n
99
ARG
524
A
ALA
525
n
100
ALA
525
A
GLY
526
n
101
GLY
526
A
HIS
527
n
102
HIS
527
A
LYS
528
n
103
LYS
528
A
THR
529
n
104
THR
529
A
HIS
530
n
105
HIS
530
A
LEU
531
n
106
LEU
531
A
LEU
532
n
107
LEU
532
A
VAL
533
n
108
VAL
533
A
ARG
534
n
109
ARG
534
A
ILE
535
n
110
ILE
535
A
GLY
536
n
111
GLY
536
A
PRO
537
n
112
PRO
537
A
ASN
538
n
113
ASN
538
A
SER
539
n
114
SER
539
A
PHE
540
n
115
PHE
540
A
SER
541
n
116
SER
541
A
ASP
542
n
117
ASP
542
A
PRO
543
n
118
PRO
543
A
GLN
544
n
119
GLN
544
A
MET
545
n
120
MET
545
A
ILE
546
n
121
ILE
546
A
ASP
547
n
122
ASP
547
A
THR
548
n
123
THR
548
A
ILE
549
n
124
ILE
549
A
ARG
550
n
125
ARG
550
A
GLU
551
n
126
GLU
551
A
GLN
552
n
127
GLN
552
A
LEU
553
n
128
LEU
553
A
ALA
554
n
129
ALA
554
A
VAL
555
n
130
VAL
555
A
TYR
556
n
131
TYR
556
A
GLY
557
n
132
GLY
557
A
VAL
558
n
133
VAL
558
A
PRO
559
n
134
PRO
559
A
GLY
560
n
135
GLY
560
A
GLU
561
n
136
GLU
561
A
ARG
562
n
137
ARG
562
A
LEU
563
n
138
LEU
563
A
TRP
564
n
139
TRP
564
A
LEU
565
n
140
LEU
565
A
GLN
566
n
141
GLN
566
A
THR
567
n
142
THR
567
A
PRO
568
n
143
PRO
568
A
GLU
569
n
144
GLU
569
A
SER
570
n
145
SER
570
A
LYS
571
n
146
LYS
571
A
VAL
572
n
147
VAL
572
A
PHE
573
n
148
PHE
573
A
THR
574
n
149
THR
574
A
HIS
575
n
150
HIS
575
A
LEU
576
n
151
LEU
576
A
ARG
577
n
152
ARG
577
A
ASN
578
n
153
ASN
578
A
ALA
579
n
154
ALA
579
A
GLN
580
n
155
GLN
580
A
GLN
581
n
156
GLN
581
A
PHE
582
n
157
PHE
582
A
LEU
583
n
158
LEU
583
A
ALA
584
n
159
ALA
584
A
ALA
585
n
160
ALA
585
A
VAL
586
n
161
VAL
586
A
SER
587
n
162
SER
587
A
ALA
588
n
163
ALA
588
A
MET
589
n
164
MET
589
A
ASP
590
n
165
ASP
590
A
CYS
591
n
166
CYS
591
A
LYS
592
n
167
LYS
592
A
VAL
593
n
168
VAL
593
A
GLY
594
n
169
GLY
594
A
LEU
595
n
170
LEU
595
A
GLU
596
n
171
GLU
596
A
GLN
597
n
172
GLN
597
A
PHE
598
n
173
PHE
598
A
GLY
599
n
174
GLY
599
A
SER
600
n
175
SER
600
A
GLY
601
n
176
GLY
601
A
LEU
602
n
177
LEU
602
A
ASP
603
n
178
ASP
603
A
SER
604
n
179
SER
604
A
PHE
605
n
180
PHE
605
A
GLN
606
n
181
GLN
606
A
LEU
607
n
182
LEU
607
A
LEU
608
n
183
LEU
608
A
ALA
609
n
184
ALA
609
A
HIS
610
n
185
HIS
610
A
PHE
611
n
186
PHE
611
A
HIS
612
n
187
HIS
612
A
PRO
613
n
188
PRO
613
A
ALA
614
n
189
ALA
614
A
PHE
615
n
190
PHE
615
A
LEU
616
n
191
LEU
616
A
LYS
617
n
192
LYS
617
A
LEU
618
n
193
LEU
618
A
ASP
619
n
194
ASP
619
A
ARG
620
n
195
ARG
620
A
GLY
621
n
196
GLY
621
A
ILE
622
n
197
ILE
622
A
THR
623
n
198
THR
623
A
GLY
624
n
199
GLY
624
A
ASP
625
n
200
ASP
625
A
ILE
626
n
201
ILE
626
A
ALA
627
n
202
ALA
627
A
SER
628
n
203
SER
628
A
ALA
629
n
204
ALA
629
A
ARG
630
n
205
ARG
630
A
ASP
631
n
206
ASP
631
A
SER
632
n
207
SER
632
A
GLN
633
n
208
GLN
633
A
GLU
634
n
209
GLU
634
A
LYS
635
n
210
LYS
635
A
ILE
636
n
211
ILE
636
A
ARG
637
n
212
ARG
637
A
GLU
638
n
213
GLU
638
A
ILE
639
n
214
ILE
639
A
THR
640
n
215
THR
640
A
SER
641
n
216
SER
641
A
ARG
642
n
217
ARG
642
A
ALA
643
n
218
ALA
643
A
GLN
644
n
219
GLN
644
A
PRO
645
n
220
PRO
645
A
ALA
646
n
221
ALA
646
A
GLY
647
n
222
GLY
647
A
ILE
648
n
223
ILE
648
A
LEU
649
n
224
LEU
649
A
THR
650
n
225
THR
650
A
MET
651
n
226
MET
651
A
ALA
652
n
227
ALA
652
A
GLU
653
n
228
GLU
653
A
PHE
654
n
229
PHE
654
A
VAL
655
n
230
VAL
655
A
ALA
656
n
231
ALA
656
A
ASP
657
n
232
ASP
657
A
ALA
658
n
233
ALA
658
A
GLN
659
n
234
GLN
659
A
SER
660
n
235
SER
660
A
MET
661
n
236
MET
661
A
SER
662
n
237
SER
662
A
SER
663
n
238
SER
663
A
PHE
664
n
239
PHE
664
A
PHE
665
n
240
PHE
665
A
SER
666
n
241
SER
666
A
ALA
667
n
242
ALA
667
A
GLY
668
n
243
GLY
668
A
VAL
669
n
244
VAL
669
A
ASP
670
n
245
ASP
670
A
TYR
671
n
246
TYR
671
A
VAL
672
n
247
VAL
672
A
GLN
673
n
248
GLN
673
A
GLY
674
n
249
GLY
674
A
ASP
675
n
250
ASP
675
A
PHE
676
n
251
PHE
676
A
VAL
677
n
252
VAL
677
A
ALA
678
n
253
ALA
678
A
PRO
679
n
254
PRO
679
A
THR
680
n
255
THR
680
A
GLY
681
n
256
GLY
681
A
PRO
682
n
257
PRO
682
A
LEU
683
n
258
LEU
683
A
MET
684
n
259
MET
684
A
ASN
685
n
260
ASN
685
A
TYR
686
n
261
TYR
686
A
GLU
687
n
262
GLU
687
A
PHE
688
n
263
PHE
688
A
GLY
689
n
264
GLY
689
A
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
463
A
N
GLN
38
A
O
GLN
477
A
O
GLN
52
A
N
ALA
478
A
N
ALA
53
A
O
LEU
532
A
O
LEU
107
A
N
LEU
531
A
N
LEU
106
A
O
TRP
564
A
O
TRP
139
A
N
LEU
565
A
N
LEU
140
A
O
LYS
592
A
O
LYS
167
A
N
LEU
595
A
N
LEU
170
A
O
LYS
617
A
O
LYS
192
A
N
LEU
618
A
N
LEU
193
A
O
MET
651
A
O
MET
226
A
N
ALA
652
A
N
ALA
227
A
O
TYR
671
A
O
TYR
246
A
O
VAL
672
A
O
VAL
247
A
N
LEU
466
A
N
LEU
41
A
N
GLN
463
A
N
GLN
38
A
O
GLN
477
A
O
GLN
52
A
N
LEU
482
A
N
LEU
57
A
O
MET
489
A
O
MET
64
1
A
A
CD
OE2
GLU
GLU
561
561
-0.078
0.011
1.252
1.174
N
1
A
HIS
575
-141.83
48.72
1
A
ASP
590
81.54
10.28
1
A
ALA
678
-179.36
137.87
1
A
MET
684
-101.94
77.90
15.536
-0.05
0.00
0.00
0.02
0.00
0.03
0.964
0.936
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.19786
0.15487
0.15700
1.80
28.34
1258
23469
23469
5.1
99.41
2.251
0.071
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.125
0.120
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.80
28.34
203
2382
94
0
2085
0.016
0.022
2428
0.001
0.020
1686
1.548
1.996
3326
0.932
3.000
4102
5.577
5.000
313
35.210
23.443
122
13.755
15.000
410
15.539
15.000
24
0.090
0.200
356
0.007
0.021
2749
0.001
0.020
524
0.829
1.500
1421
0.247
1.500
570
1.492
2.000
2314
2.410
3.000
1007
3.808
4.500
992
0.240
0.192
1.847
84
1679
20
98.82
1.80
30
4FOK
24851
24851
0
0
0.125
1
16.56
7.4
99.8
1.80
1.86
3.25
0.67
1
7.3
99.4
data collection
HKL-2000
phasing
PHASER
refinement
REFMAC
5.5.0110
data reduction
HKL-2000
data scaling
HKL-2000
1.8 A Crystal structure of the FimX EAL domain in complex with c-diGMP
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
ASP
430
A
ASP
5
HELX_P
A
GLY
455
A
GLY
30
1
1
26
A
SER
490
A
SER
65
HELX_P
A
HIS
501
A
HIS
76
1
2
12
A
LEU
503
A
LEU
78
HELX_P
A
ALA
525
A
ALA
100
1
3
23
A
GLY
536
A
GLY
111
HELX_P
A
PHE
540
A
PHE
115
5
4
5
A
ASP
542
A
ASP
117
HELX_P
A
GLY
557
A
GLY
132
1
5
16
A
PRO
559
A
PRO
134
HELX_P
A
GLU
561
A
GLU
136
5
6
3
A
GLU
569
A
GLU
144
HELX_P
A
THR
574
A
THR
149
1
7
6
A
HIS
575
A
HIS
150
HELX_P
A
ALA
588
A
ALA
163
1
8
14
A
GLY
601
A
GLY
176
HELX_P
A
ALA
609
A
ALA
184
1
9
9
A
ASP
619
A
ASP
194
HELX_P
A
GLY
624
A
GLY
199
1
10
6
A
ALA
629
A
ALA
204
HELX_P
A
GLY
647
A
GLY
222
1
11
19
A
ASP
657
A
ASP
232
HELX_P
A
ALA
667
A
ALA
242
1
12
11
PROTEIN BINDING
TIM like Barrel, beta-(beta/alpha)6-beta, c-di-GMP binding, Type IV pilus assembly, PilZ, PROTEIN BINDING
Q8PJX9_XANAC
UNP
1
426
Q8PJX9
VSIYDPAAADRAEEERIERWVEQLREALVGDGFLLHYQPVLNLQGEPLELYQAFLRLERNGEMMSPNAFMAIAEEHDLVT
EIDRWVVARAIRQLGERQRAGHKTHLLVRIGPNSFSDPQMIDTIREQLAVYGVPGERLWLQTPESKVFTHLRNAQQFLAA
VSAMDCKVGLEQFGSGLDSFQLLAHFHPAFLKLDRGITGDIASARDSQEKIREITSRAQPAGILTMAEFVADAQSMSSFF
SAGVDYVQGDFVAPTGPLMNYEFG
426
689
4FOK
426
689
Q8PJX9
A
1
1
264
9
3
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
458
A
PHE
33
A
PRO
464
A
PRO
39
A
LEU
475
A
LEU
50
A
ARG
484
A
ARG
59
A
HIS
530
A
HIS
105
A
ARG
534
A
ARG
109
A
LEU
563
A
LEU
138
A
PRO
568
A
PRO
143
A
LYS
592
A
LYS
167
A
PHE
598
A
PHE
173
A
PHE
615
A
PHE
190
A
LEU
618
A
LEU
193
A
LEU
649
A
LEU
224
A
ALA
652
A
ALA
227
A
TYR
671
A
TYR
246
A
VAL
672
A
VAL
247
A
LEU
466
A
LEU
41
A
ASN
467
A
ASN
42
A
PHE
458
A
PHE
33
A
PRO
464
A
PRO
39
A
LEU
475
A
LEU
50
A
ARG
484
A
ARG
59
A
GLU
487
A
GLU
62
A
MET
489
A
MET
64
BINDING SITE FOR RESIDUE C2E A 701
A
C2E
701
Software
29
BINDING SITE FOR RESIDUE GOL A 702
A
GOL
702
Software
10
BINDING SITE FOR RESIDUE GOL A 703
A
GOL
703
Software
8
BINDING SITE FOR RESIDUE GOL A 704
A
GOL
704
Software
6
BINDING SITE FOR RESIDUE GOL A 705
A
GOL
705
Software
7
BINDING SITE FOR RESIDUE GOL A 706
A
GOL
706
Software
3
BINDING SITE FOR RESIDUE GOL A 707
A
GOL
707
Software
8
BINDING SITE FOR RESIDUE GOL A 708
A
GOL
708
Software
10
BINDING SITE FOR RESIDUE GOL A 709
A
GOL
709
Software
4
A
GLN
463
A
GLN
38
29
1_555
A
PHE
479
A
PHE
54
29
1_555
A
LEU
480
A
LEU
55
29
1_555
A
ARG
481
A
ARG
56
29
1_555
A
SER
490
A
SER
65
29
1_555
A
PRO
491
A
PRO
66
29
1_555
A
ASN
492
A
ASN
67
29
1_555
A
MET
495
A
MET
70
29
1_555
A
ASP
508
A
ASP
83
29
1_555
A
ARG
534
A
ARG
109
29
1_555
A
ARG
550
A
ARG
125
29
4_455
A
GLU
551
A
GLU
126
29
4_455
A
ALA
554
A
ALA
129
29
4_455
A
GLU
653
A
GLU
228
29
1_555
A
PHE
654
A
PHE
229
29
1_555
A
GLN
673
A
GLN
248
29
1_555
A
GLY
674
A
GLY
249
29
1_555
A
ASP
675
A
ASP
250
29
1_555
A
GOL
702
C
GOL
29
1_555
A
GOL
703
D
GOL
29
1_555
A
GOL
705
F
GOL
29
1_555
A
GOL
707
H
GOL
29
4_455
A
HOH
805
K
HOH
29
1_555
A
HOH
806
K
HOH
29
4_455
A
HOH
813
K
HOH
29
1_555
A
HOH
844
K
HOH
29
1_555
A
HOH
894
K
HOH
29
1_555
A
HOH
900
K
HOH
29
1_555
A
HOH
942
K
HOH
29
1_555
A
GLU
551
A
GLU
126
10
4_455
A
ARG
620
A
ARG
195
10
1_555
A
PHE
654
A
PHE
229
10
1_555
A
VAL
655
A
VAL
230
10
1_555
A
ALA
656
A
ALA
231
10
1_555
A
GLY
674
A
GLY
249
10
1_555
A
ASP
675
A
ASP
250
10
1_555
A
C2E
701
B
C2E
10
1_555
A
HOH
944
K
HOH
10
4_455
A
HOH
953
K
HOH
10
1_555
A
ARG
534
A
ARG
109
8
1_555
A
GLU
596
A
GLU
171
8
1_555
A
GLN
597
A
GLN
172
8
1_555
A
C2E
701
B
C2E
8
1_555
A
HOH
832
K
HOH
8
1_555
A
HOH
894
K
HOH
8
1_555
A
HOH
942
K
HOH
8
1_555
A
HOH
963
K
HOH
8
1_555
A
GLU
483
A
GLU
58
6
1_555
A
GLU
634
A
GLU
209
6
1_554
A
ARG
637
A
ARG
212
6
1_554
A
GLU
638
A
GLU
213
6
1_554
A
SER
641
A
SER
216
6
1_554
A
HOH
846
K
HOH
6
1_555
A
ARG
481
A
ARG
56
7
1_555
A
MET
488
A
MET
63
7
1_555
A
SER
490
A
SER
65
7
1_555
A
ARG
550
A
ARG
125
7
4_455
A
C2E
701
B
C2E
7
1_555
A
GOL
709
J
GOL
7
1_555
A
HOH
887
K
HOH
7
4_455
A
LYS
571
A
LYS
146
3
1_555
A
THR
574
A
THR
149
3
1_555
A
HIS
575
A
HIS
150
3
1_555
A
PRO
491
A
PRO
66
8
4_555
A
ASN
492
A
ASN
67
8
4_555
A
MET
495
A
MET
70
8
4_555
A
GLU
499
A
GLU
74
8
4_555
A
ALA
554
A
ALA
129
8
1_555
A
GLY
557
A
GLY
132
8
1_555
A
C2E
701
B
C2E
8
4_555
A
GOL
708
I
GOL
8
1_555
A
PRO
491
A
PRO
66
10
4_555
A
ASN
492
A
ASN
67
10
4_555
A
MET
495
A
MET
70
10
4_555
A
ALA
496
A
ALA
71
10
4_555
A
LEU
553
A
LEU
128
10
1_555
A
GLY
557
A
GLY
132
10
1_555
A
VAL
558
A
VAL
133
10
1_555
A
PRO
559
A
PRO
134
10
1_555
A
GOL
707
H
GOL
10
1_555
A
HOH
988
K
HOH
10
4_555
A
HIS
461
A
HIS
36
4
1_555
A
ARG
481
A
ARG
56
4
1_555
A
THR
680
A
THR
255
4
1_555
A
GOL
705
F
GOL
4
1_555
18
P 21 21 2