0.021464
0.000000
0.002052
-0.000000
0.019486
0.000000
0.000000
-0.000000
0.013506
0.000000
0.000000
0.000000
Martin, R.N.A.
McGeehan, J.E.
Kneale, G.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
95.460
90.000
46.590
51.320
74.380
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
S
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
R
C
N
283
N
O
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
Y
291
N
doub
Y
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
US
Plos One
1932-6203
9
e98365
e98365
10.1371/journal.pone.0098365
24887147
Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I.
2014
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
65
900
905
10.1107/S0907444909020514
19690367
Structure of the restriction-modification controller protein C.Esp1396I.
2009
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
40
4158
4167
10.1093/nar/gkr1250
22210861
Recognition of dual symmetry by the controller protein C.Esp1396I based on the structure of the transcriptional activation complex.
2012
10.2210/pdb4fn3/pdb
pdb_00004fn3
100
1
PIXEL
2012-05-06
PSI PILATUS 6M
Si(111) double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
I02
Diamond
0.9795
SYNCHROTRON
DIAMOND BEAMLINE I02
9505.175
Regulatory protein
S52A
2
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
92
nat
water
no
no
GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIKEILK
HD
GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIKEILK
HD
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
RFL1396
sample
esp1396IC
211595
Enterobacter sp. RFL1396
469008
Escherichia coli
BL21(DE3)pLysS
Plasmid
pET28
1
2.33
47.17
VAPOR DIFFUSION, SITTING DROP
200mM Sodium Sulphate, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2013-05-29
1
1
2014-06-18
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
DNA Bound Tetramer
Native Free Protein
R35A Mutant Free Protein
DNA Bound Dimer (Left Hand Operator)
R46A Mutant Free Protein (Trigonal Form)
R46A Mutant Free Protein (Monoclinic Form)
RCSB
Y
RCSB
2012-06-19
REL
REL
SO4
SULFATE ION
HOH
water
SO4
1
2
SO4
SO4
101
A
SO4
2
2
SO4
SO4
102
A
SO4
3
2
SO4
SO4
101
B
HOH
2
3
HOH
HOH
201
A
HOH
6
3
HOH
HOH
202
A
HOH
8
3
HOH
HOH
203
A
HOH
9
3
HOH
HOH
204
A
HOH
10
3
HOH
HOH
205
A
HOH
13
3
HOH
HOH
206
A
HOH
15
3
HOH
HOH
207
A
HOH
16
3
HOH
HOH
208
A
HOH
20
3
HOH
HOH
209
A
HOH
21
3
HOH
HOH
210
A
HOH
22
3
HOH
HOH
211
A
HOH
23
3
HOH
HOH
212
A
HOH
25
3
HOH
HOH
213
A
HOH
26
3
HOH
HOH
214
A
HOH
29
3
HOH
HOH
215
A
HOH
31
3
HOH
HOH
216
A
HOH
34
3
HOH
HOH
217
A
HOH
35
3
HOH
HOH
218
A
HOH
36
3
HOH
HOH
219
A
HOH
37
3
HOH
HOH
220
A
HOH
40
3
HOH
HOH
221
A
HOH
43
3
HOH
HOH
222
A
HOH
44
3
HOH
HOH
223
A
HOH
49
3
HOH
HOH
224
A
HOH
51
3
HOH
HOH
225
A
HOH
52
3
HOH
HOH
226
A
HOH
53
3
HOH
HOH
227
A
HOH
54
3
HOH
HOH
228
A
HOH
55
3
HOH
HOH
229
A
HOH
62
3
HOH
HOH
230
A
HOH
64
3
HOH
HOH
231
A
HOH
65
3
HOH
HOH
232
A
HOH
68
3
HOH
HOH
233
A
HOH
75
3
HOH
HOH
234
A
HOH
80
3
HOH
HOH
235
A
HOH
81
3
HOH
HOH
236
A
HOH
83
3
HOH
HOH
237
A
HOH
86
3
HOH
HOH
238
A
HOH
87
3
HOH
HOH
239
A
HOH
89
3
HOH
HOH
240
A
HOH
91
3
HOH
HOH
241
A
HOH
93
3
HOH
HOH
242
A
HOH
94
3
HOH
HOH
243
A
HOH
1
3
HOH
HOH
244
A
HOH
58
3
HOH
HOH
201
B
HOH
3
3
HOH
HOH
202
B
HOH
4
3
HOH
HOH
203
B
HOH
5
3
HOH
HOH
204
B
HOH
7
3
HOH
HOH
205
B
HOH
11
3
HOH
HOH
206
B
HOH
12
3
HOH
HOH
207
B
HOH
17
3
HOH
HOH
208
B
HOH
18
3
HOH
HOH
209
B
HOH
19
3
HOH
HOH
210
B
HOH
24
3
HOH
HOH
211
B
HOH
27
3
HOH
HOH
212
B
HOH
28
3
HOH
HOH
213
B
HOH
30
3
HOH
HOH
214
B
HOH
32
3
HOH
HOH
215
B
HOH
33
3
HOH
HOH
216
B
HOH
38
3
HOH
HOH
217
B
HOH
39
3
HOH
HOH
218
B
HOH
41
3
HOH
HOH
219
B
HOH
42
3
HOH
HOH
220
B
HOH
45
3
HOH
HOH
221
B
HOH
46
3
HOH
HOH
222
B
HOH
47
3
HOH
HOH
223
B
HOH
48
3
HOH
HOH
224
B
HOH
50
3
HOH
HOH
225
B
HOH
56
3
HOH
HOH
226
B
HOH
57
3
HOH
HOH
227
B
HOH
59
3
HOH
HOH
228
B
HOH
60
3
HOH
HOH
229
B
HOH
61
3
HOH
HOH
230
B
HOH
63
3
HOH
HOH
231
B
HOH
66
3
HOH
HOH
232
B
HOH
67
3
HOH
HOH
233
B
HOH
70
3
HOH
HOH
234
B
HOH
71
3
HOH
HOH
235
B
HOH
72
3
HOH
HOH
236
B
HOH
73
3
HOH
HOH
237
B
HOH
74
3
HOH
HOH
238
B
HOH
76
3
HOH
HOH
239
B
HOH
77
3
HOH
HOH
240
B
HOH
78
3
HOH
HOH
241
B
HOH
79
3
HOH
HOH
242
B
HOH
82
3
HOH
HOH
243
B
HOH
84
3
HOH
HOH
244
B
HOH
85
3
HOH
HOH
245
B
HOH
88
3
HOH
HOH
246
B
HOH
90
3
HOH
HOH
247
B
HOH
92
3
HOH
HOH
248
B
2.500
2.500
37.020
37.020
Phaser MODE: MR_AUTO
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
n
5
2
A
SER
3
n
6
SER
3
A
PHE
4
n
7
PHE
4
A
LEU
5
n
8
LEU
5
A
LEU
6
n
9
LEU
6
A
SER
7
n
10
SER
7
A
LYS
8
n
11
LYS
8
A
VAL
9
n
12
VAL
9
A
SER
10
n
13
SER
10
A
PHE
11
n
14
PHE
11
A
VAL
12
n
15
VAL
12
A
ILE
13
n
16
ILE
13
A
LYS
14
n
17
LYS
14
A
LYS
15
n
18
LYS
15
A
ILE
16
n
19
ILE
16
A
ARG
17
n
20
ARG
17
A
LEU
18
n
21
LEU
18
A
GLU
19
n
22
GLU
19
A
LYS
20
n
23
LYS
20
A
GLY
21
n
24
GLY
21
A
MET
22
n
25
MET
22
A
THR
23
n
26
THR
23
A
GLN
24
n
27
GLN
24
A
GLU
25
n
28
GLU
25
A
ASP
26
n
29
ASP
26
A
LEU
27
n
30
LEU
27
A
ALA
28
n
31
ALA
28
A
TYR
29
n
32
TYR
29
A
LYS
30
n
33
LYS
30
A
SER
31
n
34
SER
31
A
ASN
32
n
35
ASN
32
A
LEU
33
n
36
LEU
33
A
ASP
34
n
37
ASP
34
A
ARG
35
n
38
ARG
35
A
THR
36
n
39
THR
36
A
TYR
37
n
40
TYR
37
A
ILE
38
n
41
ILE
38
A
SER
39
n
42
SER
39
A
GLY
40
n
43
GLY
40
A
ILE
41
n
44
ILE
41
A
GLU
42
n
45
GLU
42
A
ARG
43
n
46
ARG
43
A
ASN
44
n
47
ASN
44
A
SER
45
n
48
SER
45
A
ARG
46
n
49
ARG
46
A
ASN
47
n
50
ASN
47
A
LEU
48
n
51
LEU
48
A
THR
49
n
52
THR
49
A
ILE
50
n
53
ILE
50
A
LYS
51
n
54
LYS
51
A
ALA
52
n
55
ALA
52
A
LEU
53
n
56
LEU
53
A
GLU
54
n
57
GLU
54
A
LEU
55
n
58
LEU
55
A
ILE
56
n
59
ILE
56
A
MET
57
n
60
MET
57
A
LYS
58
n
61
LYS
58
A
GLY
59
n
62
GLY
59
A
LEU
60
n
63
LEU
60
A
GLU
61
n
64
GLU
61
A
VAL
62
n
65
VAL
62
A
SER
63
n
66
SER
63
A
ASP
64
n
67
ASP
64
A
VAL
65
n
68
VAL
65
A
VAL
66
n
69
VAL
66
A
PHE
67
n
70
PHE
67
A
PHE
68
n
71
PHE
68
A
GLU
69
n
72
GLU
69
A
MET
70
n
73
MET
70
A
LEU
71
n
74
LEU
71
A
ILE
72
n
75
ILE
72
A
LYS
73
n
76
LYS
73
A
GLU
74
n
77
GLU
74
A
ILE
75
n
78
ILE
75
A
LEU
76
n
79
LEU
76
A
LYS
77
n
80
LYS
77
A
HIS
78
n
81
HIS
78
A
ASP
79
n
82
ASP
79
A
n
1
-2
B
n
2
-1
B
n
3
0
B
n
4
1
B
n
5
2
B
SER
3
n
6
SER
3
B
PHE
4
n
7
PHE
4
B
LEU
5
n
8
LEU
5
B
LEU
6
n
9
LEU
6
B
SER
7
n
10
SER
7
B
LYS
8
n
11
LYS
8
B
VAL
9
n
12
VAL
9
B
SER
10
n
13
SER
10
B
PHE
11
n
14
PHE
11
B
VAL
12
n
15
VAL
12
B
ILE
13
n
16
ILE
13
B
LYS
14
n
17
LYS
14
B
LYS
15
n
18
LYS
15
B
ILE
16
n
19
ILE
16
B
ARG
17
n
20
ARG
17
B
LEU
18
n
21
LEU
18
B
GLU
19
n
22
GLU
19
B
LYS
20
n
23
LYS
20
B
GLY
21
n
24
GLY
21
B
MET
22
n
25
MET
22
B
THR
23
n
26
THR
23
B
GLN
24
n
27
GLN
24
B
GLU
25
n
28
GLU
25
B
ASP
26
n
29
ASP
26
B
LEU
27
n
30
LEU
27
B
ALA
28
n
31
ALA
28
B
TYR
29
n
32
TYR
29
B
LYS
30
n
33
LYS
30
B
SER
31
n
34
SER
31
B
ASN
32
n
35
ASN
32
B
LEU
33
n
36
LEU
33
B
ASP
34
n
37
ASP
34
B
ARG
35
n
38
ARG
35
B
THR
36
n
39
THR
36
B
TYR
37
n
40
TYR
37
B
ILE
38
n
41
ILE
38
B
SER
39
n
42
SER
39
B
GLY
40
n
43
GLY
40
B
ILE
41
n
44
ILE
41
B
GLU
42
n
45
GLU
42
B
ARG
43
n
46
ARG
43
B
ASN
44
n
47
ASN
44
B
SER
45
n
48
SER
45
B
ARG
46
n
49
ARG
46
B
ASN
47
n
50
ASN
47
B
LEU
48
n
51
LEU
48
B
THR
49
n
52
THR
49
B
ILE
50
n
53
ILE
50
B
LYS
51
n
54
LYS
51
B
ALA
52
n
55
ALA
52
B
LEU
53
n
56
LEU
53
B
GLU
54
n
57
GLU
54
B
LEU
55
n
58
LEU
55
B
ILE
56
n
59
ILE
56
B
MET
57
n
60
MET
57
B
LYS
58
n
61
LYS
58
B
GLY
59
n
62
GLY
59
B
LEU
60
n
63
LEU
60
B
GLU
61
n
64
GLU
61
B
VAL
62
n
65
VAL
62
B
SER
63
n
66
SER
63
B
ASP
64
n
67
ASP
64
B
VAL
65
n
68
VAL
65
B
VAL
66
n
69
VAL
66
B
PHE
67
n
70
PHE
67
B
PHE
68
n
71
PHE
68
B
GLU
69
n
72
GLU
69
B
MET
70
n
73
MET
70
B
LEU
71
n
74
LEU
71
B
ILE
72
n
75
ILE
72
B
LYS
73
n
76
LYS
73
B
GLU
74
n
77
GLU
74
B
ILE
75
n
78
ILE
75
B
LEU
76
n
79
LEU
76
B
LYS
77
n
80
LYS
77
B
HIS
78
n
81
HIS
78
B
ASP
79
n
82
ASP
79
B
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
2550
-58
8250
2400
-43
8190
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_554
-x,y,-z-1
crystal symmetry operation
7.0773173652
0.0000000000
-74.0425281775
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_455
-x-1,y,-z
crystal symmetry operation
-46.5900000000
0.0000000000
0.0000000000
1
A
GLY
-2
A
GLY
1
1
Y
1
A
SER
-1
A
SER
2
1
Y
1
A
HIS
0
A
HIS
3
1
Y
1
A
MET
1
A
MET
4
1
Y
1
A
GLU
2
A
GLU
5
1
Y
1
B
GLY
-2
B
GLY
1
1
Y
1
B
SER
-1
B
SER
2
1
Y
1
B
HIS
0
B
HIS
3
1
Y
1
B
MET
1
B
MET
4
1
Y
1
B
GLU
2
B
GLU
5
1
Y
1
B
B
O
O
HOH
HOH
210
217
2.01
1
B
B
O
O
HOH
HOH
224
231
2.06
1
B
B
O
O
HOH
HOH
216
229
2.12
1
B
B
CG
O
MET
HOH
57
207
2.17
1
A
A
CG
O
MET
HOH
57
216
2.17
1
6.30
0.90
118.30
124.60
B
B
B
CB
CG
OD1
ASP
ASP
ASP
64
64
64
N
1
A
A
CG
CD2
HIS
HIS
78
78
0.058
0.009
1.354
1.412
N
60.210
18.9933
7.200
-0.0100
0.0000
-0.0000
0.0100
-0.0000
-0.0000
0.9660
0.9580
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY
0.2069
0.1788
0.1802
1.7900
34.4100
841
16667
16665
5.0000
99.7900
0.2143
0.1834
1.000
0.010
0.7853
2.3130
0.0730
0.1254
0.1148
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1250
0.1150
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
1.7900
34.4100
92
1363
15
0
1256
0.027
0.020
1411
2.171
2.012
1913
4.936
5.000
194
24.347
24.576
59
14.318
15.000
319
17.932
15.000
9
0.173
0.200
227
0.011
0.020
1001
0.2820
0.2530
1.8320
67
1131
1198
20
99.8300
1.786
74.043
4FN3
16667
16667
1.0
1.0
0.084
1
11.600
5.900
99.800
0.434
1.790
1.880
1.500
14381
2385
0.434
1
6.000
99.800
0.301
1.880
2.000
2.100
13469
2306
0.301
1
5.800
99.800
0.181
2.000
2.130
3.500
12346
2170
0.181
1
5.700
99.900
0.122
2.130
2.310
5.200
12115
2004
0.122
1
6.000
99.800
0.100
2.310
2.530
6.000
10171
1830
0.100
1
5.600
99.900
0.083
2.530
2.820
7.200
10314
1686
0.083
1
6.100
99.900
0.067
2.820
3.260
8.000
8528
1486
0.067
1
5.700
100.000
0.055
3.260
3.990
8.100
7842
1264
0.055
1
6.200
99.800
0.056
3.990
5.650
7.700
5607
982
0.056
1
5.700
99.800
0.053
5.650
37.021
8.000
3258
554
0.053
1
5.900
99.800
data reduction
Andrew G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2011/05/18
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.20
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Wed Jun 29 17:49:14 2011 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.3.0
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
GDA
Crystal Structure of an S52A mutant of the Restriction-Modification Controller Protein C.Esp1396I
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
SER
3
A
SER
6
HELX_P
A
LYS
20
A
LYS
23
1
1
18
A
THR
23
A
THR
26
HELX_P
A
ASN
32
A
ASN
35
1
2
10
A
ASP
34
A
ASP
37
HELX_P
A
ASN
44
A
ASN
47
1
3
11
A
THR
49
A
THR
52
HELX_P
A
GLU
61
A
GLU
64
1
4
13
A
SER
63
A
SER
66
HELX_P
A
ASP
79
A
ASP
82
1
5
17
B
PHE
4
B
PHE
7
HELX_P
B
LYS
20
B
LYS
23
1
6
17
B
THR
23
B
THR
26
HELX_P
B
ASN
32
B
ASN
35
1
7
10
B
ASP
34
B
ASP
37
HELX_P
B
ASN
44
B
ASN
47
1
8
11
B
THR
49
B
THR
52
HELX_P
B
GLU
61
B
GLU
64
1
9
13
B
SER
63
B
SER
66
HELX_P
B
ASP
79
B
ASP
82
1
10
17
TRANSCRIPTION
Restriction-modification, Helix-Turn-Helix, Transcriptional Regulator, DNA, TRANSCRIPTION
Q8GGH0_9ENTR
UNP
1
1
Q8GGH0
MESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD
1
79
4FN3
1
79
Q8GGH0
A
1
4
82
1
79
4FN3
1
79
Q8GGH0
B
1
4
82
1
expression tag
GLY
-2
4FN3
A
Q8GGH0
UNP
1
1
expression tag
SER
-1
4FN3
A
Q8GGH0
UNP
2
1
expression tag
HIS
0
4FN3
A
Q8GGH0
UNP
3
1
SER
engineered mutation
ALA
52
4FN3
A
Q8GGH0
UNP
52
55
2
expression tag
GLY
-2
4FN3
B
Q8GGH0
UNP
1
2
expression tag
SER
-1
4FN3
B
Q8GGH0
UNP
2
2
expression tag
HIS
0
4FN3
B
Q8GGH0
UNP
3
2
SER
engineered mutation
ALA
52
4FN3
B
Q8GGH0
UNP
52
55
BINDING SITE FOR RESIDUE SO4 A 101
A
SO4
101
Software
10
BINDING SITE FOR RESIDUE SO4 A 102
A
SO4
102
Software
5
BINDING SITE FOR RESIDUE SO4 B 101
B
SO4
101
Software
8
A
THR
23
A
THR
26
10
1_555
A
GLN
24
A
GLN
27
10
1_555
A
GLU
25
A
GLU
28
10
1_555
A
ARG
35
A
ARG
38
10
1_555
A
HOH
205
F
HOH
10
1_555
A
HOH
214
F
HOH
10
1_555
A
HOH
244
F
HOH
10
1_555
B
ARG
17
B
ARG
20
10
1_555
B
THR
23
B
THR
26
10
1_555
B
GLN
24
B
GLN
27
10
1_555
A
GLU
25
A
GLU
28
5
1_555
A
LYS
77
A
LYS
80
5
3_445
A
HIS
78
A
HIS
81
5
3_445
B
ARG
43
B
ARG
46
5
1_555
B
HOH
224
G
HOH
5
1_555
A
HIS
78
A
HIS
81
8
3_445
A
HOH
224
F
HOH
8
3_445
B
ARG
35
B
ARG
38
8
1_555
B
THR
36
B
THR
39
8
1_555
B
SER
39
B
SER
42
8
1_555
B
ARG
43
B
ARG
46
8
1_555
B
HOH
212
G
HOH
8
1_555
B
HOH
213
G
HOH
8
1_555
5
C 1 2 1