0.027876
-0.011130
-0.006445
0.000000
0.029661
0.000311
0.000000
0.000000
0.021601
0.00000
0.00000
0.00000
Sledz, P.
Hyvonen, M.
Lang, S.
Stubbs, C.J.
Abell, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
85.84
77.21
68.24
35.873
36.302
47.474
C11 H10 O2 S
206.261
3-(1-benzothiophen-2-yl)propanoic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C4 H10 N O6 P
199.099
n
PHOSPHOTHREONINE
PHOSPHONOTHREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
GE
Angew.Chem.Int.Ed.Engl.
9999
1433-7851
51
7680
7683
10.1002/anie.201202660
22730171
High-throughput interrogation of ligand binding mode using a fluorescence-based assay.
2012
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
CCD
2011-03-15
Bruker Platinum 135
SINGLE WAVELENGTH
M
x-ray
1
1.0
ROTATING ANODE
BRUKER AXS MICROSTAR
26755.518
Serine/threonine-protein kinase PLK1
2.7.11.21
1
man
polymer
1104.130
3-(1-benzothiophen-2-yl)propanoyl-derivatized DPPLHSpTA peptide
1
syn
polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
32
nat
water
Polo-like kinase 1, PLK-1, Serine/threonine-protein kinase 13, STPK13
no
no
GPLGSPEFDCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRL
ILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAII
LHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSR
GPLGSPEFDCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRL
ILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAII
LHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSR
A
polypeptide(L)
no
yes
(0OB)DPPLHS(TPO)A(NH2)
XDPPLHSTAX
E
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PLK1, PLK
9606
Homo sapiens
562
Escherichia coli
1
2.01
38.82
VAPOR DIFFUSION, SITTING DROP
0.1 M sodium acetate, 1.0 M LiCl, 30% PEG 6000, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
repository
Initial release
Database references
Other
1
0
2012-10-10
1
1
2012-10-17
1
2
2012-12-12
RCSB
Y
RCSB
2012-03-21
REL
REL
GOL
GLYCEROL
HOH
water
solid phase peptide synthesis
sample
Enzyme inhibitor
3-(1-benzothiophen-2-yl)propanoyl-derivatized DPPLHSpTA peptide
Peptide-like
GOL
1
3
GOL
GOL
601
A
HOH
1
4
HOH
HOH
701
A
HOH
3
4
HOH
HOH
702
A
HOH
4
4
HOH
HOH
703
A
HOH
5
4
HOH
HOH
704
A
HOH
6
4
HOH
HOH
705
A
HOH
8
4
HOH
HOH
706
A
HOH
9
4
HOH
HOH
707
A
HOH
10
4
HOH
HOH
708
A
HOH
11
4
HOH
HOH
709
A
HOH
12
4
HOH
HOH
710
A
HOH
13
4
HOH
HOH
711
A
HOH
14
4
HOH
HOH
712
A
HOH
15
4
HOH
HOH
713
A
HOH
16
4
HOH
HOH
714
A
HOH
17
4
HOH
HOH
715
A
HOH
18
4
HOH
HOH
716
A
HOH
20
4
HOH
HOH
717
A
HOH
21
4
HOH
HOH
718
A
HOH
22
4
HOH
HOH
719
A
HOH
23
4
HOH
HOH
720
A
HOH
24
4
HOH
HOH
721
A
HOH
25
4
HOH
HOH
722
A
HOH
26
4
HOH
HOH
723
A
HOH
27
4
HOH
HOH
724
A
HOH
28
4
HOH
HOH
725
A
HOH
29
4
HOH
HOH
726
A
HOH
30
4
HOH
HOH
727
A
HOH
31
4
HOH
HOH
728
A
HOH
32
4
HOH
HOH
729
A
HOH
2
4
HOH
HOH
101
E
HOH
7
4
HOH
HOH
102
E
HOH
19
4
HOH
HOH
103
E
n
1
363
A
n
2
364
A
n
3
365
A
n
4
366
A
n
5
367
A
n
6
368
A
n
7
369
A
n
8
370
A
n
9
371
A
n
10
372
A
HIS
373
n
11
HIS
373
A
LEU
374
n
12
LEU
374
A
SER
375
n
13
SER
375
A
ASP
376
n
14
ASP
376
A
MET
377
n
15
MET
377
A
LEU
378
n
16
LEU
378
A
GLN
379
n
17
GLN
379
A
GLN
380
n
18
GLN
380
A
LEU
381
n
19
LEU
381
A
HIS
382
n
20
HIS
382
A
SER
383
n
21
SER
383
A
VAL
384
n
22
VAL
384
A
ASN
385
n
23
ASN
385
A
ALA
386
n
24
ALA
386
A
SER
387
n
25
SER
387
A
LYS
388
n
26
LYS
388
A
PRO
389
n
27
PRO
389
A
SER
390
n
28
SER
390
A
GLU
391
n
29
GLU
391
A
ARG
392
n
30
ARG
392
A
GLY
393
n
31
GLY
393
A
LEU
394
n
32
LEU
394
A
VAL
395
n
33
VAL
395
A
ARG
396
n
34
ARG
396
A
GLN
397
n
35
GLN
397
A
GLU
398
n
36
GLU
398
A
GLU
399
n
37
GLU
399
A
ALA
400
n
38
ALA
400
A
GLU
401
n
39
GLU
401
A
ASP
402
n
40
ASP
402
A
PRO
403
n
41
PRO
403
A
ALA
404
n
42
ALA
404
A
CYS
405
n
43
CYS
405
A
ILE
406
n
44
ILE
406
A
PRO
407
n
45
PRO
407
A
ILE
408
n
46
ILE
408
A
PHE
409
n
47
PHE
409
A
TRP
410
n
48
TRP
410
A
VAL
411
n
49
VAL
411
A
SER
412
n
50
SER
412
A
LYS
413
n
51
LYS
413
A
TRP
414
n
52
TRP
414
A
VAL
415
n
53
VAL
415
A
ASP
416
n
54
ASP
416
A
TYR
417
n
55
TYR
417
A
SER
418
n
56
SER
418
A
ASP
419
n
57
ASP
419
A
LYS
420
n
58
LYS
420
A
TYR
421
n
59
TYR
421
A
GLY
422
n
60
GLY
422
A
LEU
423
n
61
LEU
423
A
GLY
424
n
62
GLY
424
A
TYR
425
n
63
TYR
425
A
GLN
426
n
64
GLN
426
A
LEU
427
n
65
LEU
427
A
CYS
428
n
66
CYS
428
A
ASP
429
n
67
ASP
429
A
ASN
430
n
68
ASN
430
A
SER
431
n
69
SER
431
A
VAL
432
n
70
VAL
432
A
GLY
433
n
71
GLY
433
A
VAL
434
n
72
VAL
434
A
LEU
435
n
73
LEU
435
A
PHE
436
n
74
PHE
436
A
ASN
437
n
75
ASN
437
A
ASP
438
n
76
ASP
438
A
SER
439
n
77
SER
439
A
THR
440
n
78
THR
440
A
ARG
441
n
79
ARG
441
A
LEU
442
n
80
LEU
442
A
ILE
443
n
81
ILE
443
A
LEU
444
n
82
LEU
444
A
TYR
445
n
83
TYR
445
A
ASN
446
n
84
ASN
446
A
ASP
447
n
85
ASP
447
A
GLY
448
n
86
GLY
448
A
ASP
449
n
87
ASP
449
A
SER
450
n
88
SER
450
A
LEU
451
n
89
LEU
451
A
GLN
452
n
90
GLN
452
A
TYR
453
n
91
TYR
453
A
ILE
454
n
92
ILE
454
A
GLU
455
n
93
GLU
455
A
ARG
456
n
94
ARG
456
A
ASP
457
n
95
ASP
457
A
GLY
458
n
96
GLY
458
A
THR
459
n
97
THR
459
A
GLU
460
n
98
GLU
460
A
SER
461
n
99
SER
461
A
TYR
462
n
100
TYR
462
A
LEU
463
n
101
LEU
463
A
THR
464
n
102
THR
464
A
VAL
465
n
103
VAL
465
A
SER
466
n
104
SER
466
A
SER
467
n
105
SER
467
A
ALA
468
n
106
HIS
468
A
PRO
469
n
107
PRO
469
A
ALA
470
n
108
ASN
470
A
SER
471
n
109
SER
471
A
LEU
472
n
110
LEU
472
A
MET
473
n
111
MET
473
A
LYS
474
n
112
LYS
474
A
LYS
475
n
113
LYS
475
A
ILE
476
n
114
ILE
476
A
THR
477
n
115
THR
477
A
LEU
478
n
116
LEU
478
A
LEU
479
n
117
LEU
479
A
LYS
480
n
118
LYS
480
A
TYR
481
n
119
TYR
481
A
PHE
482
n
120
PHE
482
A
ARG
483
n
121
ARG
483
A
ASN
484
n
122
ASN
484
A
TYR
485
n
123
TYR
485
A
MET
486
n
124
MET
486
A
SER
487
n
125
SER
487
A
GLU
488
n
126
GLU
488
A
HIS
489
n
127
HIS
489
A
LEU
490
n
128
LEU
490
A
LEU
491
n
129
LEU
491
A
LYS
492
n
130
LYS
492
A
ALA
493
n
131
ALA
493
A
GLY
494
n
132
GLY
494
A
ALA
495
n
133
ALA
495
A
ASN
496
n
134
ASN
496
A
ILE
497
n
135
ILE
497
A
THR
498
n
136
THR
498
A
PRO
499
n
137
PRO
499
A
ARG
500
n
138
ARG
500
A
GLU
501
n
139
GLU
501
A
GLY
502
n
140
GLY
502
A
ASP
503
n
141
ASP
503
A
GLU
504
n
142
GLU
504
A
LEU
505
n
143
LEU
505
A
ALA
506
n
144
ALA
506
A
ARG
507
n
145
ARG
507
A
LEU
508
n
146
LEU
508
A
PRO
509
n
147
PRO
509
A
TYR
510
n
148
TYR
510
A
LEU
511
n
149
LEU
511
A
ARG
512
n
150
ARG
512
A
THR
513
n
151
THR
513
A
TRP
514
n
152
TRP
514
A
PHE
515
n
153
PHE
515
A
ARG
516
n
154
ARG
516
A
THR
517
n
155
THR
517
A
ARG
518
n
156
ARG
518
A
SER
519
n
157
SER
519
A
ALA
520
n
158
ALA
520
A
ILE
521
n
159
ILE
521
A
ILE
522
n
160
ILE
522
A
LEU
523
n
161
LEU
523
A
HIS
524
n
162
HIS
524
A
LEU
525
n
163
LEU
525
A
SER
526
n
164
SER
526
A
ASN
527
n
165
ASN
527
A
GLY
528
n
166
GLY
528
A
SER
529
n
167
SER
529
A
VAL
530
n
168
VAL
530
A
GLN
531
n
169
GLN
531
A
ILE
532
n
170
ILE
532
A
ASN
533
n
171
ASN
533
A
PHE
534
n
172
PHE
534
A
PHE
535
n
173
PHE
535
A
GLN
536
n
174
GLN
536
A
ASP
537
n
175
ASP
537
A
HIS
538
n
176
HIS
538
A
THR
539
n
177
THR
539
A
LYS
540
n
178
LYS
540
A
LEU
541
n
179
LEU
541
A
ILE
542
n
180
ILE
542
A
LEU
543
n
181
LEU
543
A
CYS
544
n
182
CYS
544
A
PRO
545
n
183
PRO
545
A
LEU
546
n
184
LEU
546
A
MET
547
n
185
MET
547
A
ALA
548
n
186
ALA
548
A
ALA
549
n
187
ALA
549
A
VAL
550
n
188
VAL
550
A
THR
551
n
189
THR
551
A
TYR
552
n
190
TYR
552
A
ILE
553
n
191
ILE
553
A
ASP
554
n
192
ASP
554
A
GLU
555
n
193
GLU
555
A
LYS
556
n
194
LYS
556
A
ARG
557
n
195
ARG
557
A
ASP
558
n
196
ASP
558
A
PHE
559
n
197
PHE
559
A
ARG
560
n
198
ARG
560
A
THR
561
n
199
THR
561
A
TYR
562
n
200
TYR
562
A
ARG
563
n
201
ARG
563
A
LEU
564
n
202
LEU
564
A
SER
565
n
203
SER
565
A
LEU
566
n
204
LEU
566
A
LEU
567
n
205
LEU
567
A
GLU
568
n
206
GLU
568
A
GLU
569
n
207
GLU
569
A
TYR
570
n
208
TYR
570
A
GLY
571
n
209
GLY
571
A
CYS
572
n
210
CYS
572
A
CYS
573
n
211
CYS
573
A
LYS
574
n
212
LYS
574
A
GLU
575
n
213
GLU
575
A
LEU
576
n
214
LEU
576
A
ALA
577
n
215
ALA
577
A
SER
578
n
216
SER
578
A
ARG
579
n
217
ARG
579
A
LEU
580
n
218
LEU
580
A
ARG
581
n
219
ARG
581
A
TYR
582
n
220
TYR
582
A
ALA
583
n
221
ALA
583
A
ARG
584
n
222
ARG
584
A
THR
585
n
223
THR
585
A
MET
586
n
224
MET
586
A
VAL
587
n
225
VAL
587
A
ASP
588
n
226
ASP
588
A
LYS
589
n
227
LYS
589
A
LEU
590
n
228
LEU
590
A
LEU
591
n
229
LEU
591
A
SER
592
n
230
SER
592
A
SER
593
n
231
SER
593
A
ARG
594
n
232
ARG
594
A
0OB
1
n
1
0OB
1
E
ASP
2
n
2
ASP
2
E
PRO
3
n
3
PRO
3
E
PRO
4
n
4
PRO
4
E
LEU
5
n
5
LEU
5
E
HIS
6
n
6
HIS
6
E
SER
7
n
7
SER
7
E
TPO
8
n
8
TPO
8
E
ALA
9
n
9
ALA
9
E
n
10
10
E
author_and_software_defined_assembly
PISA
2
dimeric
1310
-9
11370
E
TPO
8
PHOSPHOTHREONINE
B
TPO
8
THR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
433
A
O
GLY
71
A
N
TYR
425
A
N
TYR
63
A
O
GLN
426
A
O
GLN
64
A
N
LYS
413
A
N
LYS
51
A
N
ASP
416
A
N
ASP
54
E
O
LEU
5
B
O
LEU
5
A
N
ILE
443
A
N
ILE
81
A
O
GLN
452
A
O
GLN
90
A
N
LEU
451
A
N
LEU
89
A
O
LEU
463
A
O
LEU
101
A
N
PHE
515
A
N
PHE
153
A
O
ILE
522
A
O
ILE
160
A
N
LEU
523
A
N
LEU
161
A
O
GLN
531
A
O
GLN
169
A
N
VAL
530
A
N
VAL
168
A
O
LEU
543
A
O
LEU
181
A
N
CYS
544
A
N
CYS
182
A
O
ALA
549
A
O
ALA
187
A
N
TYR
552
A
N
TYR
190
A
O
ARG
560
A
O
ARG
198
1
A
CG
GLU
398
A
CG
GLU
36
1
Y
1
A
CD
GLU
398
A
CD
GLU
36
1
Y
1
A
OE1
GLU
398
A
OE1
GLU
36
1
Y
1
A
OE2
GLU
398
A
OE2
GLU
36
1
Y
1
A
CG
ARG
456
A
CG
ARG
94
1
Y
1
A
CD
ARG
456
A
CD
ARG
94
1
Y
1
A
NE
ARG
456
A
NE
ARG
94
1
Y
1
A
CZ
ARG
456
A
CZ
ARG
94
1
Y
1
A
NH1
ARG
456
A
NH1
ARG
94
1
Y
1
A
NH2
ARG
456
A
NH2
ARG
94
1
Y
1
A
OG
SER
467
A
OG
SER
105
1
Y
1
A
CG
HIS
468
A
CG
HIS
106
1
Y
1
A
ND1
HIS
468
A
ND1
HIS
106
1
Y
1
A
CD2
HIS
468
A
CD2
HIS
106
1
Y
1
A
CE1
HIS
468
A
CE1
HIS
106
1
Y
1
A
NE2
HIS
468
A
NE2
HIS
106
1
Y
1
A
CG
ASN
470
A
CG
ASN
108
1
Y
1
A
OD1
ASN
470
A
OD1
ASN
108
1
Y
1
A
ND2
ASN
470
A
ND2
ASN
108
1
Y
1
A
CD
LYS
474
A
CD
LYS
112
1
Y
1
A
CE
LYS
474
A
CE
LYS
112
1
Y
1
A
NZ
LYS
474
A
NZ
LYS
112
1
Y
1
A
CG
GLU
504
A
CG
GLU
142
1
Y
1
A
CD
GLU
504
A
CD
GLU
142
1
Y
1
A
OE1
GLU
504
A
OE1
GLU
142
1
Y
1
A
OE2
GLU
504
A
OE2
GLU
142
1
Y
1
A
CG
ARG
507
A
CG
ARG
145
1
Y
1
A
CD
ARG
507
A
CD
ARG
145
1
Y
1
A
NE
ARG
507
A
NE
ARG
145
1
Y
1
A
CZ
ARG
507
A
CZ
ARG
145
1
Y
1
A
NH1
ARG
507
A
NH1
ARG
145
1
Y
1
A
NH2
ARG
507
A
NH2
ARG
145
1
Y
1
A
NE
ARG
512
A
NE
ARG
150
1
Y
1
A
CZ
ARG
512
A
CZ
ARG
150
1
Y
1
A
NH1
ARG
512
A
NH1
ARG
150
1
Y
1
A
NH2
ARG
512
A
NH2
ARG
150
1
Y
1
A
CG
ARG
518
A
CG
ARG
156
1
Y
1
A
CD
ARG
518
A
CD
ARG
156
1
Y
1
A
NE
ARG
518
A
NE
ARG
156
1
Y
1
A
CZ
ARG
518
A
CZ
ARG
156
1
Y
1
A
NH1
ARG
518
A
NH1
ARG
156
1
Y
1
A
NH2
ARG
518
A
NH2
ARG
156
1
Y
1
A
CG
LYS
556
A
CG
LYS
194
1
Y
1
A
CD
LYS
556
A
CD
LYS
194
1
Y
1
A
CE
LYS
556
A
CE
LYS
194
1
Y
1
A
NZ
LYS
556
A
NZ
LYS
194
1
Y
1
A
CG
LYS
574
A
CG
LYS
212
1
Y
1
A
CD
LYS
574
A
CD
LYS
212
1
Y
1
A
CE
LYS
574
A
CE
LYS
212
1
Y
1
A
NZ
LYS
574
A
NZ
LYS
212
1
Y
1
A
GLY
363
A
GLY
1
1
Y
1
A
PRO
364
A
PRO
2
1
Y
1
A
LEU
365
A
LEU
3
1
Y
1
A
GLY
366
A
GLY
4
1
Y
1
A
SER
367
A
SER
5
1
Y
1
A
PRO
368
A
PRO
6
1
Y
1
A
GLU
369
A
GLU
7
1
Y
1
A
PHE
370
A
PHE
8
1
Y
1
A
ASP
371
A
ASP
9
1
Y
1
A
CYS
372
A
CYS
10
1
Y
1
E
NH2
10
B
NH2
10
1
Y
1
6.40
0.90
118.30
124.70
A
A
A
CB
CG
OD1
ASP
ASP
ASP
416
416
416
N
1
9.01
1.50
119.30
128.31
E
E
E
C
N
CA
ASP
PRO
PRO
2
3
3
Y
1
16.28
1.90
121.10
137.38
E
E
E
O
C
N
PRO
PRO
PRO
3
3
4
Y
1
A
A
CE2
CD2
TYR
TYR
417
417
-0.092
0.015
1.389
1.297
N
1
A
LYS
388
54.43
78.58
1
A
ASP
402
-157.84
86.22
1
A
TYR
417
-146.26
37.11
1
A
LYS
420
-143.49
-49.01
1
A
ASN
430
70.99
-0.91
1
A
ASP
449
-141.46
-37.62
1
A
ARG
456
-81.67
43.09
1
A
ASP
457
-162.74
-7.27
1
A
ALA
548
45.23
79.88
12.783
0.849
0.751
0.32984
0.26691
0.26984
2.75
46.29
246
5084
4.6
94.57
RANDOM
1
THROUGHOUT
3P2Z
0.570
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
2.75
46.29
32
1871
6
0
1833
0.026
0.021
1881
2.765
1.994
2557
4.980
5.000
226
34.125
23.293
82
16.286
15.000
309
11.497
15.000
13
0.173
0.200
287
0.004
0.021
1399
0.446
1.500
1143
0.249
2.000
1832
0.285
3.000
738
0.502
4.500
714
0.425
0.414
2.821
19
371
20
95.12
2.75
46.29
4E9D
5636
5422
2.0
1
96.2
data collection
PROTEUM PLUS
phasing
MOLREP
refinement
REFMAC
5.5.0109
data reduction
PROTEUM PLUS
data scaling
PROTEUM PLUS
Plk1, Synthetic phosphopeptide
The structure of the polo-box domain (PBD) of polo-like kinase 1 (Plk1) in complex with 3-(1-benzothiophen-2-yl)propanoyl-derivatized DPPLHSpTA peptide
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
SER
375
A
SER
13
HELX_P
A
ALA
386
A
ALA
24
1
1
12
A
ARG
396
A
ARG
34
HELX_P
A
GLU
401
A
GLU
39
5
2
6
A
ASP
402
A
ASP
40
HELX_P
A
ILE
406
A
ILE
44
5
3
5
A
LEU
472
A
LEU
110
HELX_P
A
LEU
490
A
LEU
128
1
4
19
A
LEU
564
A
LEU
202
HELX_P
A
TYR
570
A
TYR
208
1
5
7
A
CYS
573
A
CYS
211
HELX_P
A
LEU
591
A
LEU
229
1
6
19
covale
1.336
sing
E
SER
7
B
C
SER
7
1_555
E
TPO
8
B
N
TPO
8
1_555
covale
1.330
sing
E
TPO
8
B
C
TPO
8
1_555
E
ALA
9
B
N
ALA
9
1_555
covale
1.295
sing
E
0OB
1
B
CAU
0OB
1
1_555
E
ASP
2
B
N
ASP
2
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
serine/threonine kinase, transferase, phosphoprotein binding domain, TRANSFERASE-TRANSFERASE INHIBITOR complex
PLK1_HUMAN
UNP
1
371
P53350
DCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDS
LQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSV
QINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSR
4E9D
PDB
2
1
4E9D
XDPPLHSTAX
371
594
4E9D
371
594
P53350
A
1
9
232
1
10
4E9D
1
10
4E9D
E
2
1
10
1
EXPRESSION TAG
GLY
363
4E9D
A
P53350
UNP
1
1
EXPRESSION TAG
PRO
364
4E9D
A
P53350
UNP
2
1
EXPRESSION TAG
LEU
365
4E9D
A
P53350
UNP
3
1
EXPRESSION TAG
GLY
366
4E9D
A
P53350
UNP
4
1
EXPRESSION TAG
SER
367
4E9D
A
P53350
UNP
5
1
EXPRESSION TAG
PRO
368
4E9D
A
P53350
UNP
6
1
EXPRESSION TAG
GLU
369
4E9D
A
P53350
UNP
7
1
EXPRESSION TAG
PHE
370
4E9D
A
P53350
UNP
8
4
3
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
432
A
VAL
70
A
PHE
436
A
PHE
74
A
GLY
422
A
GLY
60
A
LEU
427
A
LEU
65
A
VAL
411
A
VAL
49
A
ASP
416
A
ASP
54
E
LEU
5
B
LEU
5
E
HIS
6
B
HIS
6
A
ARG
441
A
ARG
79
A
LEU
444
A
LEU
82
A
SER
450
A
SER
88
A
ILE
454
A
ILE
92
A
GLU
460
A
GLU
98
A
THR
464
A
THR
102
A
LEU
511
A
LEU
149
A
ARG
516
A
ARG
154
A
ALA
520
A
ALA
158
A
LEU
525
A
LEU
163
A
VAL
530
A
VAL
168
A
PHE
534
A
PHE
172
A
LYS
540
A
LYS
178
A
CYS
544
A
CYS
182
A
ALA
549
A
ALA
187
A
ILE
553
A
ILE
191
A
PHE
559
A
PHE
197
A
ARG
563
A
ARG
201
BINDING SITE FOR RESIDUE GOL A 601
Software
1
BINDING SITE FOR CHAIN E OF 3-(1-BENZOTHIOPHEN-2-YL)PROPANOYL-DERIVATIZED DPPLHSPTA PEPTIDE
Software
22
A
ARG
594
A
ARG
232
1
1_555
A
ARG
392
A
ARG
30
22
1_654
A
GLY
393
A
GLY
31
22
1_654
A
LYS
413
A
LYS
51
22
1_555
A
TRP
414
A
TRP
52
22
1_555
A
ASP
416
A
ASP
54
22
1_555
A
TYR
417
A
TYR
55
22
1_555
A
ASP
419
A
ASP
57
22
1_555
A
TYR
421
A
TYR
59
22
1_555
A
ASP
457
A
ASP
95
22
1_565
A
GLY
458
A
GLY
96
22
1_565
A
THR
459
A
THR
97
22
1_565
A
TYR
481
A
TYR
119
22
1_555
A
PHE
482
A
PHE
120
22
1_555
A
TYR
485
A
TYR
123
22
1_555
A
LEU
490
A
LEU
128
22
1_555
A
LEU
491
A
LEU
129
22
1_555
A
ARG
516
A
ARG
154
22
1_555
A
HIS
538
A
HIS
176
22
1_555
A
LYS
540
A
LYS
178
22
1_555
A
GLU
568
A
GLU
206
22
1_654
E
HOH
101
E
HOH
22
1_555
E
HOH
102
E
HOH
22
1_555
1
P 1