0.004125
0.002381
0.000000
0.000000
0.004763
0.000000
0.000000
0.000000
0.009061
0.00000
0.00000
0.00000
Singhal, A.
Ostermaier, M.K.
Vishnivetskiy, S.A.
Panneels, V.
Homan, K.T.
Tesmer, J.J.G.
Veprintsev, D.
Deupi, X.
Gurevich, V.V.
Schertler, G.F.X.
Standfuss, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
242.440
242.440
110.360
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C14 H28 O6
292.369
n
octyl beta-D-glucopyranoside
Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside
D-saccharide
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C16 H32 O2
256.424
PALMITIC ACID
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
C
N
4
N
H
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
C
N
9
N
O
N
10
N
O
N
11
N
C
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
N
N
16
S
C
N
17
N
C
N
18
N
O
N
19
N
C
N
20
N
O
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
N
N
29
S
C
N
30
N
C
N
31
N
O
N
32
N
C
N
33
N
C
N
34
N
C
N
35
N
N
N
36
N
C
N
37
N
N
N
38
N
N
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
C
N
61
N
O
N
62
N
N
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
N
N
73
S
C
N
74
N
C
N
75
N
O
N
76
N
C
N
77
N
C
N
78
N
O
N
79
N
O
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
R
C
N
89
S
C
N
90
S
C
N
91
S
C
N
92
R
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
R
C
N
113
N
O
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
R
C
N
121
N
O
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
R
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
S
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
Y
228
N
C
Y
229
N
N
Y
230
N
C
Y
231
N
C
Y
232
N
N
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
S
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
N
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
S
C
N
317
S
C
N
318
S
C
N
319
S
C
N
320
R
C
N
321
N
C
N
322
N
O
N
323
N
O
N
324
N
O
N
325
N
O
N
326
N
O
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
S
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
R
C
N
361
R
C
N
362
R
C
N
363
S
C
N
364
R
C
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
N
N
369
N
O
N
370
N
O
N
371
N
O
N
372
N
O
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
C
N
414
N
O
N
415
N
O
N
416
N
C
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
C
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
N
468
N
C
N
469
N
C
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
N
N
481
S
C
N
482
N
C
N
483
N
O
N
484
N
C
N
485
N
O
N
486
N
O
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
S
N
495
N
O
N
496
N
O
N
497
N
O
N
498
N
O
N
499
N
N
N
500
S
C
N
501
N
C
N
502
N
O
N
503
R
C
N
504
N
O
N
505
N
C
N
506
N
O
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
N
N
517
S
C
N
518
N
C
N
519
N
O
N
520
N
C
Y
521
N
C
Y
522
N
C
Y
523
N
C
Y
524
N
N
Y
525
N
C
Y
526
N
C
Y
527
N
C
Y
528
N
C
Y
529
N
C
N
530
N
O
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
N
N
544
S
C
N
545
N
C
N
546
N
O
N
547
N
C
Y
548
N
C
Y
549
N
C
Y
550
N
C
Y
551
N
C
Y
552
N
C
Y
553
N
C
N
554
N
O
N
555
N
O
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
N
N
568
S
C
N
569
N
C
N
570
N
O
N
571
N
C
N
572
N
C
N
573
N
C
N
574
N
O
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
sing
Y
225
N
doub
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
doub
N
478
N
doub
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
doub
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
Y
508
N
doub
Y
509
N
sing
Y
510
N
sing
N
511
N
sing
Y
512
N
doub
Y
513
N
sing
Y
514
N
sing
N
515
N
sing
Y
516
N
sing
Y
517
N
doub
N
518
N
sing
Y
519
N
doub
N
520
N
sing
Y
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
doub
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
Y
536
N
doub
Y
537
N
sing
Y
538
N
sing
N
539
N
sing
Y
540
N
doub
N
541
N
sing
Y
542
N
doub
N
543
N
sing
Y
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
doub
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
UK
Embo Rep.
1469-221X
14
520
10.1038/EMBOR.2013.44
23579341
Insights Into Congenital Stationary Night Blindness Based on the Structure of G90D Rhodopsin.
2013
10.2210/pdb4bez/pdb
pdb_00004bez
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
X06SA
SLS
1
SYNCHROTRON
SLS BEAMLINE X06SA
39092.621
RHODOPSIN
YES
1
man
polymer
748.682
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
59.044
ACETATE ION
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
256.424
PALMITIC ACID
1
syn
non-polymer
292.369
octyl beta-D-glucopyranoside
1
man
non-polymer
18.015
water
12
nat
water
NIGHT BLINDNESS CAUSING G90D RHODOPSIN
no
yes
(ACE)MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYI
LLNLAVADLFMVFGDFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM
GVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA
QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN
CMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
XMCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNL
AVADLFMVFGDFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF
TWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE
SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT
TLCCGKNPLGDDEASTTVSKTETSQVAPA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
CATTLE
RETINA
HUMAN
sample
ROD PHOTORECEPTOR
9913
EYE
BOS TAURUS
HEK293S GNTI-
9606
HOMO SAPIENS
1
7.98
DATA WERE COLLECTED USING HIGH REDUNDANCY AND LOW DOSE STRATEGY AS SUGGESTED BY KARPLUS PA, DIEDERICHS K. SCIENCE. 2012.
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Atomic model
Data collection
Derived calculations
Other
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2013-04-24
1
1
2013-06-19
2
0
2020-07-29
2
1
2023-12-20
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_pdbx_database_status.status_code_sf
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
NAG
1330
n
B
NAG
1
A
NAG
1331
n
B
NAG
2
A
BMA
1332
n
B
BMA
3
A
MAN
1333
n
B
MAN
4
DManpb
b-D-mannopyranose
b-D-Manp
Man
b-octylglucoside
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
NIGHT BLINDNESS CAUSING G90D RHODOPSIN IN COMPLEX WITH GACT2 PEPTIDE
PDBE
Y
PDBE
2013-03-12
REL
REL
oligosaccharide
DManpa1-3DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3/a4-b1_b4-c1_c3-d1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}}}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
BMA
NAG
3
2
2
O1
HO4
sing
C1
O3
MAN
BMA
4
3
2
O1
HO3
sing
n
n
n
n
ACT
ACETATE ION
SO4
SULFATE ION
PLM
PALMITIC ACID
BOG
octyl beta-D-glucopyranoside
HOH
water
4A4M
PDB ENTRY 4A4M
PDB
experimental model
ACT
1327
3
ACT
ACT
1327
A
SO4
1328
4
SO4
SO4
1328
A
PLM
1329
5
PLM
PLM
1329
A
BOG
1334
6
BOG
BOG
1334
A
HOH
2001
7
HOH
HOH
2001
A
HOH
2002
7
HOH
HOH
2002
A
HOH
2003
7
HOH
HOH
2003
A
HOH
2004
7
HOH
HOH
2004
A
HOH
2005
7
HOH
HOH
2005
A
HOH
2006
7
HOH
HOH
2006
A
HOH
2007
7
HOH
HOH
2007
A
HOH
2008
7
HOH
HOH
2008
A
HOH
2009
7
HOH
HOH
2009
A
HOH
2010
7
HOH
HOH
2010
A
HOH
2011
7
HOH
HOH
2011
A
HOH
2012
7
HOH
HOH
2012
A
ACE
0
n
1
ACE
0
A
MET
1
n
2
MET
1
A
CYS
2
n
3
CYS
2
A
GLY
3
n
4
GLY
3
A
THR
4
n
5
THR
4
A
GLU
5
n
6
GLU
5
A
GLY
6
n
7
GLY
6
A
PRO
7
n
8
PRO
7
A
ASN
8
n
9
ASN
8
A
PHE
9
n
10
PHE
9
A
TYR
10
n
11
TYR
10
A
VAL
11
n
12
VAL
11
A
PRO
12
n
13
PRO
12
A
PHE
13
n
14
PHE
13
A
SER
14
n
15
SER
14
A
ASN
15
n
16
ASN
15
A
LYS
16
n
17
LYS
16
A
THR
17
n
18
THR
17
A
GLY
18
n
19
GLY
18
A
VAL
19
n
20
VAL
19
A
VAL
20
n
21
VAL
20
A
ARG
21
n
22
ARG
21
A
SER
22
n
23
SER
22
A
PRO
23
n
24
PRO
23
A
PHE
24
n
25
PHE
24
A
GLU
25
n
26
GLU
25
A
ALA
26
n
27
ALA
26
A
PRO
27
n
28
PRO
27
A
GLN
28
n
29
GLN
28
A
TYR
29
n
30
TYR
29
A
TYR
30
n
31
TYR
30
A
LEU
31
n
32
LEU
31
A
ALA
32
n
33
ALA
32
A
GLU
33
n
34
GLU
33
A
PRO
34
n
35
PRO
34
A
TRP
35
n
36
TRP
35
A
GLN
36
n
37
GLN
36
A
PHE
37
n
38
PHE
37
A
SER
38
n
39
SER
38
A
MET
39
n
40
MET
39
A
LEU
40
n
41
LEU
40
A
ALA
41
n
42
ALA
41
A
ALA
42
n
43
ALA
42
A
TYR
43
n
44
TYR
43
A
MET
44
n
45
MET
44
A
PHE
45
n
46
PHE
45
A
LEU
46
n
47
LEU
46
A
LEU
47
n
48
LEU
47
A
ILE
48
n
49
ILE
48
A
MET
49
n
50
MET
49
A
LEU
50
n
51
LEU
50
A
GLY
51
n
52
GLY
51
A
PHE
52
n
53
PHE
52
A
PRO
53
n
54
PRO
53
A
ILE
54
n
55
ILE
54
A
ASN
55
n
56
ASN
55
A
PHE
56
n
57
PHE
56
A
LEU
57
n
58
LEU
57
A
THR
58
n
59
THR
58
A
LEU
59
n
60
LEU
59
A
TYR
60
n
61
TYR
60
A
VAL
61
n
62
VAL
61
A
THR
62
n
63
THR
62
A
VAL
63
n
64
VAL
63
A
GLN
64
n
65
GLN
64
A
HIS
65
n
66
HIS
65
A
LYS
66
n
67
LYS
66
A
LYS
67
n
68
LYS
67
A
LEU
68
n
69
LEU
68
A
ARG
69
n
70
ARG
69
A
THR
70
n
71
THR
70
A
PRO
71
n
72
PRO
71
A
LEU
72
n
73
LEU
72
A
ASN
73
n
74
ASN
73
A
TYR
74
n
75
TYR
74
A
ILE
75
n
76
ILE
75
A
LEU
76
n
77
LEU
76
A
LEU
77
n
78
LEU
77
A
ASN
78
n
79
ASN
78
A
LEU
79
n
80
LEU
79
A
ALA
80
n
81
ALA
80
A
VAL
81
n
82
VAL
81
A
ALA
82
n
83
ALA
82
A
ASP
83
n
84
ASP
83
A
LEU
84
n
85
LEU
84
A
PHE
85
n
86
PHE
85
A
MET
86
n
87
MET
86
A
VAL
87
n
88
VAL
87
A
PHE
88
n
89
PHE
88
A
GLY
89
n
90
GLY
89
A
ASP
90
n
91
ASP
90
A
PHE
91
n
92
PHE
91
A
THR
92
n
93
THR
92
A
THR
93
n
94
THR
93
A
THR
94
n
95
THR
94
A
LEU
95
n
96
LEU
95
A
TYR
96
n
97
TYR
96
A
THR
97
n
98
THR
97
A
SER
98
n
99
SER
98
A
LEU
99
n
100
LEU
99
A
HIS
100
n
101
HIS
100
A
GLY
101
n
102
GLY
101
A
TYR
102
n
103
TYR
102
A
PHE
103
n
104
PHE
103
A
VAL
104
n
105
VAL
104
A
PHE
105
n
106
PHE
105
A
GLY
106
n
107
GLY
106
A
PRO
107
n
108
PRO
107
A
THR
108
n
109
THR
108
A
GLY
109
n
110
GLY
109
A
CYS
110
n
111
CYS
110
A
ASN
111
n
112
ASN
111
A
LEU
112
n
113
LEU
112
A
GLU
113
n
114
GLU
113
A
GLY
114
n
115
GLY
114
A
PHE
115
n
116
PHE
115
A
PHE
116
n
117
PHE
116
A
ALA
117
n
118
ALA
117
A
THR
118
n
119
THR
118
A
LEU
119
n
120
LEU
119
A
GLY
120
n
121
GLY
120
A
GLY
121
n
122
GLY
121
A
GLU
122
n
123
GLU
122
A
ILE
123
n
124
ILE
123
A
ALA
124
n
125
ALA
124
A
LEU
125
n
126
LEU
125
A
TRP
126
n
127
TRP
126
A
SER
127
n
128
SER
127
A
LEU
128
n
129
LEU
128
A
VAL
129
n
130
VAL
129
A
VAL
130
n
131
VAL
130
A
LEU
131
n
132
LEU
131
A
ALA
132
n
133
ALA
132
A
ILE
133
n
134
ILE
133
A
GLU
134
n
135
GLU
134
A
ARG
135
n
136
ARG
135
A
TYR
136
n
137
TYR
136
A
VAL
137
n
138
VAL
137
A
VAL
138
n
139
VAL
138
A
VAL
139
n
140
VAL
139
A
CYS
140
n
141
CYS
140
A
LYS
141
n
142
LYS
141
A
PRO
142
n
143
PRO
142
A
MET
143
n
144
MET
143
A
SER
144
n
145
SER
144
A
ASN
145
n
146
ASN
145
A
PHE
146
n
147
PHE
146
A
ARG
147
n
148
ARG
147
A
PHE
148
n
149
PHE
148
A
GLY
149
n
150
GLY
149
A
GLU
150
n
151
GLU
150
A
ASN
151
n
152
ASN
151
A
HIS
152
n
153
HIS
152
A
ALA
153
n
154
ALA
153
A
ILE
154
n
155
ILE
154
A
MET
155
n
156
MET
155
A
GLY
156
n
157
GLY
156
A
VAL
157
n
158
VAL
157
A
ALA
158
n
159
ALA
158
A
PHE
159
n
160
PHE
159
A
THR
160
n
161
THR
160
A
TRP
161
n
162
TRP
161
A
VAL
162
n
163
VAL
162
A
MET
163
n
164
MET
163
A
ALA
164
n
165
ALA
164
A
LEU
165
n
166
LEU
165
A
ALA
166
n
167
ALA
166
A
CYS
167
n
168
CYS
167
A
ALA
168
n
169
ALA
168
A
ALA
169
n
170
ALA
169
A
PRO
170
n
171
PRO
170
A
PRO
171
n
172
PRO
171
A
LEU
172
n
173
LEU
172
A
VAL
173
n
174
VAL
173
A
GLY
174
n
175
GLY
174
A
TRP
175
n
176
TRP
175
A
SER
176
n
177
SER
176
A
ARG
177
n
178
ARG
177
A
TYR
178
n
179
TYR
178
A
ILE
179
n
180
ILE
179
A
PRO
180
n
181
PRO
180
A
GLU
181
n
182
GLU
181
A
GLY
182
n
183
GLY
182
A
MET
183
n
184
MET
183
A
GLN
184
n
185
GLN
184
A
CYS
185
n
186
CYS
185
A
SER
186
n
187
SER
186
A
CYS
187
n
188
CYS
187
A
GLY
188
n
189
GLY
188
A
ILE
189
n
190
ILE
189
A
ASP
190
n
191
ASP
190
A
TYR
191
n
192
TYR
191
A
TYR
192
n
193
TYR
192
A
THR
193
n
194
THR
193
A
PRO
194
n
195
PRO
194
A
HIS
195
n
196
HIS
195
A
GLU
196
n
197
GLU
196
A
GLU
197
n
198
GLU
197
A
THR
198
n
199
THR
198
A
ASN
199
n
200
ASN
199
A
ASN
200
n
201
ASN
200
A
GLU
201
n
202
GLU
201
A
SER
202
n
203
SER
202
A
PHE
203
n
204
PHE
203
A
VAL
204
n
205
VAL
204
A
ILE
205
n
206
ILE
205
A
TYR
206
n
207
TYR
206
A
MET
207
n
208
MET
207
A
PHE
208
n
209
PHE
208
A
VAL
209
n
210
VAL
209
A
VAL
210
n
211
VAL
210
A
HIS
211
n
212
HIS
211
A
PHE
212
n
213
PHE
212
A
ILE
213
n
214
ILE
213
A
ILE
214
n
215
ILE
214
A
PRO
215
n
216
PRO
215
A
LEU
216
n
217
LEU
216
A
ILE
217
n
218
ILE
217
A
VAL
218
n
219
VAL
218
A
ILE
219
n
220
ILE
219
A
PHE
220
n
221
PHE
220
A
PHE
221
n
222
PHE
221
A
CYS
222
n
223
CYS
222
A
TYR
223
n
224
TYR
223
A
GLY
224
n
225
GLY
224
A
GLN
225
n
226
GLN
225
A
LEU
226
n
227
LEU
226
A
VAL
227
n
228
VAL
227
A
PHE
228
n
229
PHE
228
A
THR
229
n
230
THR
229
A
VAL
230
n
231
VAL
230
A
LYS
231
n
232
LYS
231
A
GLU
232
n
233
GLU
232
A
ALA
233
n
234
ALA
233
A
ALA
234
n
235
ALA
234
A
ALA
235
n
236
ALA
235
A
GLN
236
n
237
GLN
236
A
GLN
237
n
238
GLN
237
A
GLN
238
n
239
GLN
238
A
GLU
239
n
240
GLU
239
A
SER
240
n
241
SER
240
A
ALA
241
n
242
ALA
241
A
THR
242
n
243
THR
242
A
THR
243
n
244
THR
243
A
GLN
244
n
245
GLN
244
A
LYS
245
n
246
LYS
245
A
ALA
246
n
247
ALA
246
A
GLU
247
n
248
GLU
247
A
LYS
248
n
249
LYS
248
A
GLU
249
n
250
GLU
249
A
VAL
250
n
251
VAL
250
A
THR
251
n
252
THR
251
A
ARG
252
n
253
ARG
252
A
MET
253
n
254
MET
253
A
VAL
254
n
255
VAL
254
A
ILE
255
n
256
ILE
255
A
ILE
256
n
257
ILE
256
A
MET
257
n
258
MET
257
A
VAL
258
n
259
VAL
258
A
ILE
259
n
260
ILE
259
A
ALA
260
n
261
ALA
260
A
PHE
261
n
262
PHE
261
A
LEU
262
n
263
LEU
262
A
ILE
263
n
264
ILE
263
A
CYS
264
n
265
CYS
264
A
TRP
265
n
266
TRP
265
A
LEU
266
n
267
LEU
266
A
PRO
267
n
268
PRO
267
A
TYR
268
n
269
TYR
268
A
ALA
269
n
270
ALA
269
A
GLY
270
n
271
GLY
270
A
VAL
271
n
272
VAL
271
A
ALA
272
n
273
ALA
272
A
PHE
273
n
274
PHE
273
A
TYR
274
n
275
TYR
274
A
ILE
275
n
276
ILE
275
A
PHE
276
n
277
PHE
276
A
THR
277
n
278
THR
277
A
HIS
278
n
279
HIS
278
A
GLN
279
n
280
GLN
279
A
GLY
280
n
281
GLY
280
A
SER
281
n
282
SER
281
A
CYS
282
n
283
CYS
282
A
PHE
283
n
284
PHE
283
A
GLY
284
n
285
GLY
284
A
PRO
285
n
286
PRO
285
A
ILE
286
n
287
ILE
286
A
PHE
287
n
288
PHE
287
A
MET
288
n
289
MET
288
A
THR
289
n
290
THR
289
A
ILE
290
n
291
ILE
290
A
PRO
291
n
292
PRO
291
A
ALA
292
n
293
ALA
292
A
PHE
293
n
294
PHE
293
A
PHE
294
n
295
PHE
294
A
ALA
295
n
296
ALA
295
A
LYS
296
n
297
LYS
296
A
THR
297
n
298
THR
297
A
SER
298
n
299
SER
298
A
ALA
299
n
300
ALA
299
A
VAL
300
n
301
VAL
300
A
TYR
301
n
302
TYR
301
A
ASN
302
n
303
ASN
302
A
PRO
303
n
304
PRO
303
A
VAL
304
n
305
VAL
304
A
ILE
305
n
306
ILE
305
A
TYR
306
n
307
TYR
306
A
ILE
307
n
308
ILE
307
A
MET
308
n
309
MET
308
A
MET
309
n
310
MET
309
A
ASN
310
n
311
ASN
310
A
LYS
311
n
312
LYS
311
A
GLN
312
n
313
GLN
312
A
PHE
313
n
314
PHE
313
A
ARG
314
n
315
ARG
314
A
ASN
315
n
316
ASN
315
A
CYS
316
n
317
CYS
316
A
MET
317
n
318
MET
317
A
VAL
318
n
319
VAL
318
A
THR
319
n
320
THR
319
A
THR
320
n
321
THR
320
A
LEU
321
n
322
LEU
321
A
CYS
322
n
323
CYS
322
A
CYS
323
n
324
CYS
323
A
GLY
324
n
325
GLY
324
A
LYS
325
n
326
LYS
325
A
ASN
326
n
327
ASN
326
A
n
328
327
A
n
329
328
A
n
330
329
A
n
331
330
A
n
332
331
A
n
333
332
A
n
334
333
A
n
335
334
A
n
336
335
A
n
337
336
A
n
338
337
A
n
339
338
A
n
340
339
A
n
341
340
A
n
342
341
A
n
343
342
A
n
344
343
A
n
345
344
A
n
346
345
A
n
347
346
A
n
348
347
A
n
349
348
A
software_defined_assembly
PISA
2
dimeric
6440
2.6
30780
A
ASN
15
GLYCOSYLATION SITE
A
ASN
16
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_556
-x,-x+y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
110.3600000000
A
N
THR
4
A
N
THR
5
A
O
VAL
11
A
O
VAL
12
A
N
GLU
181
A
N
GLU
182
A
O
SER
186
A
O
SER
187
1
A
PRO
327
A
PRO
328
1
Y
1
A
LEU
328
A
LEU
329
1
Y
1
A
GLY
329
A
GLY
330
1
Y
1
A
ASP
330
A
ASP
331
1
Y
1
A
ASP
331
A
ASP
332
1
Y
1
A
GLU
332
A
GLU
333
1
Y
1
A
ALA
333
A
ALA
334
1
Y
1
A
SER
334
A
SER
335
1
Y
1
A
THR
335
A
THR
336
1
Y
1
A
THR
336
A
THR
337
1
Y
1
A
VAL
337
A
VAL
338
1
Y
1
A
SER
338
A
SER
339
1
Y
1
A
LYS
339
A
LYS
340
1
Y
1
A
THR
340
A
THR
341
1
Y
1
A
GLU
341
A
GLU
342
1
Y
1
A
THR
342
A
THR
343
1
Y
1
A
SER
343
A
SER
344
1
Y
1
A
GLN
344
A
GLN
345
1
Y
1
A
VAL
345
A
VAL
346
1
Y
1
A
ALA
346
A
ALA
347
1
Y
1
A
PRO
347
A
PRO
348
1
Y
1
A
ALA
348
A
ALA
349
1
Y
1
A
A
NZ
OE2
LYS
GLU
231
247
2.05
1
A
A
CB
SG
CYS
CYS
2
282
2.14
1
A
A
O
OG1
VAL
THR
157
160
2.14
1
19.48
2.50
121.70
141.18
A
A
A
C
N
CA
ACE
MET
MET
0
1
1
Y
1
12.21
1.20
111.50
123.71
A
A
A
CB
CA
C
CYS
CYS
CYS
323
323
323
N
1
10.02
1.10
114.20
124.22
A
A
A
CA
CB
SG
CYS
CYS
CYS
323
323
323
N
1
A
GLU
25
-120.48
-54.38
1
A
TYR
29
-56.24
-8.25
1
A
ASP
90
-121.70
-69.28
1
A
SER
176
50.96
-150.17
1
A
ARG
177
179.23
157.36
1
A
VAL
209
-77.18
-72.37
1
A
PHE
212
-131.74
-60.13
1
A
SER
281
173.38
158.27
1
A
ILE
307
-125.21
-60.93
55.66
0.2443
0.2292
0.2299
3.3
40
941
18833
5.0
99.4
0.42
1
1.99
MOLECULAR REPLACEMENT
27.93
0.90
1.11
PDB ENTRY 4A4M
ML
FLAT BULK SOLVENT MODEL
3.3
40
12
2703
96
0
2595
0.011
2777
1.601
3775
20.704
993
0.116
430
0.007
457
0.3093
0.3068
3.4738
133
2519
100.00
0.3187
0.2592
3.6911
134
2548
100.00
0.2600
0.2187
3.9754
134
2534
100.00
0.2265
0.1938
4.3743
134
2544
100.00
0.1941
0.2004
5.0046
134
2553
100.00
0.2429
0.2410
6.2949
135
2569
100.00
0.2454
0.2346
29.3238
137
2625
100.00
81.51
3.30
40.00
4BEZ
18833
0.31
1
9.00
20.2
99.4
3.30
3.47
1.43
1
20.5
97.4
refinement
PHENIX
(PHENIX.REFINE)
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
MR
Night blindness causing G90D rhodopsin in the active conformation
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
A
SER
14
A
SER
15
HELX_P
A
GLY
18
A
GLY
19
5
1
5
A
GLU
33
A
GLU
34
HELX_P
A
HIS
65
A
HIS
66
1
2
33
A
LYS
66
A
LYS
67
HELX_P
A
ARG
69
A
ARG
70
5
3
4
A
THR
70
A
THR
71
HELX_P
A
ASP
90
A
ASP
91
1
4
21
A
ASP
90
A
ASP
91
HELX_P
A
LEU
99
A
LEU
100
1
5
10
A
PHE
105
A
PHE
106
HELX_P
A
LYS
141
A
LYS
142
1
6
37
A
GLY
149
A
GLY
150
HELX_P
A
VAL
173
A
VAL
174
1
7
25
A
ASN
199
A
ASN
200
HELX_P
A
HIS
211
A
HIS
212
1
8
13
A
PHE
212
A
PHE
213
HELX_P
A
GLN
237
A
GLN
238
1
9
26
A
SER
240
A
SER
241
HELX_P
A
HIS
278
A
HIS
279
1
10
39
A
GLY
284
A
GLY
285
HELX_P
A
ILE
307
A
ILE
308
1
11
24
A
ASN
310
A
ASN
311
HELX_P
A
CYS
322
A
CYS
323
1
12
13
disulf
2.037
A
CYS
2
A
SG
CYS
3
1_555
A
CYS
282
A
SG
CYS
283
1_555
disulf
2.042
A
CYS
110
A
SG
CYS
111
1_555
A
CYS
187
A
SG
CYS
188
1_555
covale
1.333
both
A
ACE
0
A
C
ACE
1
1_555
A
MET
1
A
N
MET
2
1_555
covale
1.434
one
N-Glycosylation
A
ASN
15
A
ND2
ASN
16
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.789
one
A
CYS
323
A
SG
CYS
324
1_555
A
PLM
1329
E
C1
PLM
1_555
covale
1.443
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.421
both
B
NAG
2
B
O4
NAG
1_555
B
BMA
3
B
C1
BMA
1_555
covale
1.447
both
B
BMA
3
B
O3
BMA
1_555
B
MAN
4
B
C1
MAN
1_555
MEMBRANE PROTEIN
MEMBRANE PROTEIN, GPCR, DISEASE MUTANT, CONGENTIAL STATIONARY NIGHT BLINDNESS, ACTIVE STATE
OPSD_BOVIN
UNP
1
P02699
1
348
4BEZ
1
348
P02699
A
1
2
349
1
expression tag
ACE
0
4BEZ
A
P02699
UNP
1
1
ASN
engineered mutation
CYS
2
4BEZ
A
P02699
UNP
2
3
1
GLY
engineered mutation
ASP
90
4BEZ
A
P02699
UNP
90
91
1
ASP
engineered mutation
CYS
282
4BEZ
A
P02699
UNP
282
283
2
2
anti-parallel
anti-parallel
A
THR
4
A
THR
5
A
GLU
5
A
GLU
6
A
TYR
10
A
TYR
11
A
VAL
11
A
VAL
12
A
TYR
178
A
TYR
179
A
GLU
181
A
GLU
182
A
SER
186
A
SER
187
A
ILE
189
A
ILE
190
155
H 3 2