0.021199
0.012240
0.000000
0.000000
0.024479
0.000000
0.000000
0.000000
0.013867
0.00000
0.00000
0.00000
Harada, K.
Yamashita, E.
Nakagawa, A.
Takeda, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
47.171
47.171
72.114
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
Fe 3
55.845
FE (III) ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
Pt 2
195.078
PLATINUM (II) ION
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
Biochim.Biophys.Acta
BBACAQ
0113
0006-3002
1834
284
291
10.1016/j.bbapap.2012.08.015
22922659
Crystal structure of the C-terminal domain of Mu phage central spike and functions of bound calcium ion
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-09-30
RAYONIX MX225HE
MAD
M
x-ray
1
1.0717
1.0
1.0721
1.0
1.0539
1.0
BL44XU
SPring-8
1.0717, 1.0721, 1.0539
SYNCHROTRON
SPRING-8 BEAMLINE BL44XU
10912.162
Protein gp45
UNP residues 100-197
1
man
polymer
195.078
PLATINUM (II) ION
1
syn
non-polymer
55.845
FE (III) ION
1
syn
non-polymer
18.015
water
11
nat
water
no
no
GHMEPGDAGIYHHEGHRIRLTKDGRCIITCKTVEVYADESMTVDTPRTTFTGDVEIQKGLGVKGKSQFDSNITAPDAIIN
GKSTDKHIHRGDSGGTTGPMQ
GHMEPGDAGIYHHEGHRIRLTKDGRCIITCKTVEVYADESMTVDTPRTTFTGDVEIQKGLGVKGKSQFDSNITAPDAIIN
GKSTDKHIHRGDSGGTTGPMQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
45
10677
Enterobacteria phage Mu
562
Escherichia coli
plasmid
1
2.12
42.05
VAPOR DIFFUSION, HANGING DROP
4.5
21% PEG 8000, 0.1M acetate pH 4.5, 0.2M sodium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
1
0
2013-02-06
PDBJ
Y
PDBJ
2012-06-01
REL
REL
PT
PLATINUM (II) ION
FE
FE (III) ION
HOH
water
PT
1
2
PT
PT
201
A
FE
1
3
FE
FE
202
A
HOH
1
4
HOH
HOH
301
A
HOH
2
4
HOH
HOH
302
A
HOH
3
4
HOH
HOH
303
A
HOH
4
4
HOH
HOH
304
A
HOH
5
4
HOH
HOH
305
A
HOH
6
4
HOH
HOH
306
A
HOH
7
4
HOH
HOH
307
A
HOH
8
4
HOH
HOH
308
A
HOH
9
4
HOH
HOH
309
A
HOH
10
4
HOH
HOH
310
A
HOH
11
4
HOH
HOH
311
A
n
1
97
A
n
2
98
A
n
3
99
A
n
4
100
A
n
5
101
A
n
6
102
A
n
7
103
A
n
8
104
A
n
9
105
A
n
10
106
A
n
11
107
A
n
12
108
A
n
13
109
A
n
14
110
A
n
15
111
A
n
16
112
A
ARG
113
n
17
ARG
113
A
ILE
114
n
18
ILE
114
A
ARG
115
n
19
ARG
115
A
LEU
116
n
20
LEU
116
A
THR
117
n
21
THR
117
A
LYS
118
n
22
LYS
118
A
ASP
119
n
23
ASP
119
A
GLY
120
n
24
GLY
120
A
ARG
121
n
25
ARG
121
A
CYS
122
n
26
CYS
122
A
ILE
123
n
27
ILE
123
A
ILE
124
n
28
ILE
124
A
THR
125
n
29
THR
125
A
CYS
126
n
30
CYS
126
A
LYS
127
n
31
LYS
127
A
THR
128
n
32
THR
128
A
VAL
129
n
33
VAL
129
A
GLU
130
n
34
GLU
130
A
VAL
131
n
35
VAL
131
A
TYR
132
n
36
TYR
132
A
ALA
133
n
37
ALA
133
A
ASP
134
n
38
ASP
134
A
GLU
135
n
39
GLU
135
A
SER
136
n
40
SER
136
A
MET
137
n
41
MET
137
A
THR
138
n
42
THR
138
A
VAL
139
n
43
VAL
139
A
ASP
140
n
44
ASP
140
A
THR
141
n
45
THR
141
A
PRO
142
n
46
PRO
142
A
ARG
143
n
47
ARG
143
A
THR
144
n
48
THR
144
A
THR
145
n
49
THR
145
A
PHE
146
n
50
PHE
146
A
THR
147
n
51
THR
147
A
GLY
148
n
52
GLY
148
A
ASP
149
n
53
ASP
149
A
VAL
150
n
54
VAL
150
A
GLU
151
n
55
GLU
151
A
ILE
152
n
56
ILE
152
A
GLN
153
n
57
GLN
153
A
LYS
154
n
58
LYS
154
A
GLY
155
n
59
GLY
155
A
LEU
156
n
60
LEU
156
A
GLY
157
n
61
GLY
157
A
VAL
158
n
62
VAL
158
A
LYS
159
n
63
LYS
159
A
GLY
160
n
64
GLY
160
A
LYS
161
n
65
LYS
161
A
SER
162
n
66
SER
162
A
GLN
163
n
67
GLN
163
A
PHE
164
n
68
PHE
164
A
ASP
165
n
69
ASP
165
A
SER
166
n
70
SER
166
A
ASN
167
n
71
ASN
167
A
ILE
168
n
72
ILE
168
A
THR
169
n
73
THR
169
A
ALA
170
n
74
ALA
170
A
PRO
171
n
75
PRO
171
A
ASP
172
n
76
ASP
172
A
ALA
173
n
77
ALA
173
A
ILE
174
n
78
ILE
174
A
ILE
175
n
79
ILE
175
A
ASN
176
n
80
ASN
176
A
GLY
177
n
81
GLY
177
A
LYS
178
n
82
LYS
178
A
SER
179
n
83
SER
179
A
THR
180
n
84
THR
180
A
ASP
181
n
85
ASP
181
A
LYS
182
n
86
LYS
182
A
HIS
183
n
87
HIS
183
A
n
88
184
A
n
89
185
A
n
90
186
A
n
91
187
A
n
92
188
A
n
93
189
A
n
94
190
A
n
95
191
A
n
96
192
A
n
97
193
A
n
98
194
A
n
99
195
A
n
100
196
A
n
101
197
A
author_and_software_defined_assembly
PISA
3
trimeric
15360
-176
9800
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-y+1,x-y+1,z
crystal symmetry operation
23.5855000000
40.8512843219
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_565
-x+y,-x+1,z
crystal symmetry operation
-23.5855000000
40.8512843219
0.0000000000
A
N
ARG
115
A
N
ARG
19
A
O
ILE
123
A
O
ILE
27
1
A
GLY
97
A
GLY
1
1
Y
1
A
HIS
98
A
HIS
2
1
Y
1
A
MET
99
A
MET
3
1
Y
1
A
GLU
100
A
GLU
4
1
Y
1
A
PRO
101
A
PRO
5
1
Y
1
A
GLY
102
A
GLY
6
1
Y
1
A
ASP
103
A
ASP
7
1
Y
1
A
ALA
104
A
ALA
8
1
Y
1
A
GLY
105
A
GLY
9
1
Y
1
A
ILE
106
A
ILE
10
1
Y
1
A
TYR
107
A
TYR
11
1
Y
1
A
HIS
108
A
HIS
12
1
Y
1
A
HIS
109
A
HIS
13
1
Y
1
A
GLU
110
A
GLU
14
1
Y
1
A
GLY
111
A
GLY
15
1
Y
1
A
HIS
112
A
HIS
16
1
Y
1
A
ILE
184
A
ILE
88
1
Y
1
A
HIS
185
A
HIS
89
1
Y
1
A
ARG
186
A
ARG
90
1
Y
1
A
GLY
187
A
GLY
91
1
Y
1
A
ASP
188
A
ASP
92
1
Y
1
A
SER
189
A
SER
93
1
Y
1
A
GLY
190
A
GLY
94
1
Y
1
A
GLY
191
A
GLY
95
1
Y
1
A
THR
192
A
THR
96
1
Y
1
A
THR
193
A
THR
97
1
Y
1
A
GLY
194
A
GLY
98
1
Y
1
A
PRO
195
A
PRO
99
1
Y
1
A
MET
196
A
MET
100
1
Y
1
A
GLN
197
A
GLN
101
1
Y
1
A
A
CB
SG
CYS
CYS
126
126
-0.096
0.016
1.812
1.716
N
1
A
ASP
119
92.93
-19.35
1
A
LYS
154
-113.20
-127.11
25.963
0.00
0.00
0.00
0.00
0.00
0.01
0.913
0.875
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.30418
0.27280
0.27436
1.75
36.06
467
9223
4.8
98.63
2.701
0.089
RANDOM
1
THROUGHOUT
MAD
0.137
0.133
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
1.75
36.06
11
555
2
0
542
0.016
0.022
547
1.676
1.964
736
7.151
5.000
70
35.282
24.545
22
13.721
15.000
105
24.528
15.000
4
0.116
0.200
89
0.009
0.021
392
1.093
1.500
350
1.856
2.000
572
3.075
3.000
197
4.732
4.500
164
0.320
0.319
1.795
37
656
20
98.02
1.75
36.06
3VTN
9825
1
phasing
SHARP
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
HKL-2000
Protein gp45
The crystal structure of the C-terminal domain of Mu phage central spike - Pt derivative for MAD
1
N
N
2
N
N
3
N
N
4
N
N
A
ILE
174
A
ILE
78
HELX_P
A
LYS
178
A
LYS
82
5
1
5
metalc
2.027
A
HIS
183
A
NE2
HIS
87
1_555
A
FE
202
C
FE
FE
1_555
METAL BINDING PROTEIN
beta-helix, central spike, Mu phage, METAL BINDING PROTEIN
VG45_BPMU
UNP
1
100
Q9T1V4
EPGDAGIYHHEGHRIRLTKDGRCIITCKTVEVYADESMTVDTPRTTFTGDVEIQKGLGVKGKSQFDSNITAPDAIINGKS
TDKHIHRGDSGGTTGPMQ
100
197
3VTN
100
197
Q9T1V4
A
1
4
101
1
EXPRESSION TAG
GLY
97
3VTN
A
Q9T1V4
UNP
1
1
EXPRESSION TAG
HIS
98
3VTN
A
Q9T1V4
UNP
2
1
EXPRESSION TAG
MET
99
3VTN
A
Q9T1V4
UNP
3
2
anti-parallel
A
ILE
114
A
ILE
18
A
LEU
116
A
LEU
20
A
CYS
122
A
CYS
26
A
ILE
124
A
ILE
28
BINDING SITE FOR RESIDUE FE A 202
Software
3
A
HIS
183
A
HIS
87
3
1_555
A
HIS
183
A
HIS
87
3
3_565
A
HIS
183
A
HIS
87
3
2_665
150
P 3 2 1