0.005263
0.000000
0.000000
0.000000
0.005263
0.000000
0.000000
0.000000
0.009680
0.00000
0.00000
0.00000
Pancera, M.
Majeed, S.
Huang, C.C.
Kwon, Y.D.
Zhou, T.
Robinson, J.E.
Sodroski, J.
Wyatt, R.
Kwong, P.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
190.000
190.000
103.302
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
beta-L-fucopyranose
beta-L-fucose; 6-deoxy-beta-L-galactopyranose; L-fucose; fucose; 6-DEOXY-BETA-L-GALACTOSE
L-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
S
C
N
89
S
C
N
90
N
O
N
91
R
C
N
92
N
O
N
93
S
C
N
94
N
O
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
Y
165
N
C
Y
166
N
N
Y
167
N
C
Y
168
N
C
Y
169
N
N
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
S
C
N
183
N
C
N
184
N
O
N
185
S
C
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
N
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
S
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
R
C
N
271
R
C
N
272
R
C
N
273
S
C
N
274
R
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
N
N
279
N
O
N
280
N
O
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
N
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
sing
Y
164
N
doub
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
Y
299
N
doub
Y
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
107
1166
1171
10.1073/pnas.0911004107
20080564
Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility.
2010
10.2210/pdb3jwo/pdb
pdb_00003jwo
NAG B 1 HAS WRONG CHIRALITY AT ATOM C1
NAG A 734 HAS WRONG CHIRALITY AT ATOM C1
NAG A 948 HAS WRONG CHIRALITY AT ATOM C1
100
1
IMAGE PLATE
2009-02-13
MAR scanner 300 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
22-ID
APS
1.00
SYNCHROTRON
APS BEAMLINE 22-ID
39655.910
HIV-1 GP120 ENVELOPE GLYCOPROTEIN
T257S, S375W
1
man
polymer
20419.252
T-cell surface glycoprotein CD4
1
man
polymer
22749.203
FAB 48D LIGHT CHAIN
1
man
polymer
23515.318
FAB 48D Heavy CHAIN
1
man
polymer
367.349
beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
10
man
non-polymer
T-cell surface antigen T4/Leu-3
no
no
LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWD
QSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSSQLLLNGSLA
EEEVVIRSVNFTDNAKTIIVQLNTSVEINCTGAGHCNIARAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHW
FNCGGEFFYCNSTQLFNSTWFNSTWSTTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGN
SNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVA
LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWD
QSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSSQLLLNGSLA
EEEVVIRSVNFTDNAKTIIVQLNTSVEINCTGAGHCNIARAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHW
FNCGGEFFYCNSTQLFNSTWFNSTWSTTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGN
SNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVA
A
polypeptide(L)
no
no
MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS
DTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTC
TVLQNQKKVEFKIDIVVLAFQKAS
MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS
DTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTC
TVLQNQKKVEFKIDIVVLAFQKAS
C
polypeptide(L)
no
no
DIQMTQSPSSVSASVGDRVTITCRASQDISTWLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFSLTINSLQP
EDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE
SVTEQDSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQGLSSPVTKSFN
DIQMTQSPSSVSASVGDRVTITCRASQDISTWLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFSLTINSLQP
EDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE
SVTEQDSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQGLSSPVTKSFN
L
polypeptide(L)
no
no
EVQLVQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGY
LELSSLRSEDTAVYYCAADPWELNAFNVWGQGTLVSVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW
NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
EVQLVQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGY
LELSSLRSEDTAVYYCAADPWELNAFNVWGQGTLVSVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW
NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HXBC2
sample
9606
Homo sapiens
7227
DROSOPHILA MELANOGASTER
FRUIT FLY
PLASMID
pMT
sample
CD4
9606
Homo sapiens
10029
CRICETULUS GRISEUS
sample
9606
Homo sapiens
39059
unidentified herpesvirus
sample
9606
Homo sapiens
39059
unidentified herpesvirus
1
4.38
71.94
VAPOR DIFFUSION
8.0
5.3% PEG8000, 0.2M Calcium acetate, 0.1M imidazole, pH 8.0, VAPOR DIFFUSION, temperature 293K
293
software
atom_site
atom_site_anisotrop
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_chiral
struct_asym
struct_conn
struct_ref_seq_dif
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Non-polymer description
Version format compliance
Refinement description
Advisory
Atomic model
Data collection
Database references
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2009-12-29
1
1
2011-07-13
1
2
2017-11-01
2
0
2020-07-29
2
1
2023-09-06
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.type_symbol
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_seq_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
NAG
789
n
B
NAG
1
A
FUL
790
n
B
FUL
2
LFucpb
b-L-fucopyranose
b-L-Fucp
Fuc
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
The same protein complex crystallized in a different space group
RCSB
Y
RCSB
2009-09-18
REL
REL
oligosaccharide
LFucpb1-6DGlcpNAcb1-
5
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1b_1-5]/1-2/a6-b1
5
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(6+1)][b-L-Fucp]{}}}
5
PDB-CARE
LINUCS
C1
O6
FUL
NAG
2
1
5
O1
HO6
sing
n
n
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
3JWD
pdb entry 3JWD
PDB
experimental model
NAG
588
6
NAG
NAG
588
A
NAG
730
6
NAG
NAG
730
A
NAG
734
6
NAG
NAG
734
A
NAG
741
6
NAG
NAG
741
A
NAG
762
6
NAG
NAG
762
A
NAG
776
6
NAG
NAG
776
A
NAG
886
6
NAG
NAG
886
A
NAG
892
6
NAG
NAG
892
A
NAG
897
6
NAG
NAG
897
A
NAG
948
6
NAG
NAG
948
A
LEU
34
n
1
LEU
34
A
TRP
35
n
2
TRP
35
A
VAL
36
n
3
VAL
36
A
THR
37
n
4
THR
37
A
VAL
38
n
5
VAL
38
A
TYR
39
n
6
TYR
39
A
TYR
40
n
7
TYR
40
A
GLY
41
n
8
GLY
41
A
VAL
42
n
9
VAL
42
A
PRO
43
n
10
PRO
43
A
VAL
44
n
11
VAL
44
A
TRP
45
n
12
TRP
45
A
LYS
46
n
13
LYS
46
A
GLU
47
n
14
GLU
47
A
ALA
48
n
15
ALA
48
A
THR
49
n
16
THR
49
A
THR
50
n
17
THR
50
A
THR
51
n
18
THR
51
A
LEU
52
n
19
LEU
52
A
PHE
53
n
20
PHE
53
A
CYS
54
n
21
CYS
54
A
ALA
55
n
22
ALA
55
A
SER
56
n
23
SER
56
A
ASP
57
n
24
ASP
57
A
ALA
58
n
25
ALA
58
A
LYS
59
n
26
LYS
59
A
ALA
60
n
27
ALA
60
A
TYR
61
n
28
TYR
61
A
ASP
62
n
29
ASP
62
A
THR
63
n
30
THR
63
A
GLU
64
n
31
GLU
64
A
VAL
65
n
32
VAL
65
A
HIS
66
n
33
HIS
66
A
ASN
67
n
34
ASN
67
A
VAL
68
n
35
VAL
68
A
TRP
69
n
36
TRP
69
A
ALA
70
n
37
ALA
70
A
THR
71
n
38
THR
71
A
HIS
72
n
39
HIS
72
A
ALA
73
n
40
ALA
73
A
CYS
74
n
41
CYS
74
A
VAL
75
n
42
VAL
75
A
PRO
76
n
43
PRO
76
A
THR
77
n
44
THR
77
A
ASP
78
n
45
ASP
78
A
PRO
79
n
46
PRO
79
A
ASN
80
n
47
ASN
80
A
PRO
81
n
48
PRO
81
A
GLN
82
n
49
GLN
82
A
GLU
83
n
50
GLU
83
A
VAL
84
n
51
VAL
84
A
VAL
85
n
52
VAL
85
A
LEU
86
n
53
LEU
86
A
VAL
87
n
54
VAL
87
A
ASN
88
n
55
ASN
88
A
VAL
89
n
56
VAL
89
A
THR
90
n
57
THR
90
A
GLU
91
n
58
GLU
91
A
ASN
92
n
59
ASN
92
A
PHE
93
n
60
PHE
93
A
ASN
94
n
61
ASN
94
A
MET
95
n
62
MET
95
A
TRP
96
n
63
TRP
96
A
LYS
97
n
64
LYS
97
A
ASN
98
n
65
ASN
98
A
ASP
99
n
66
ASP
99
A
MET
100
n
67
MET
100
A
VAL
101
n
68
VAL
101
A
GLU
102
n
69
GLU
102
A
GLN
103
n
70
GLN
103
A
MET
104
n
71
MET
104
A
HIS
105
n
72
HIS
105
A
GLU
106
n
73
GLU
106
A
ASP
107
n
74
ASP
107
A
ILE
108
n
75
ILE
108
A
ILE
109
n
76
ILE
109
A
SER
110
n
77
SER
110
A
LEU
111
n
78
LEU
111
A
TRP
112
n
79
TRP
112
A
ASP
113
n
80
ASP
113
A
GLN
114
n
81
GLN
114
A
SER
115
n
82
SER
115
A
LEU
116
n
83
LEU
116
A
LYS
117
n
84
LYS
117
A
PRO
118
n
85
PRO
118
A
CYS
119
n
86
CYS
119
A
VAL
120
n
87
VAL
120
A
LYS
121
n
88
LYS
121
A
LEU
122
n
89
LEU
122
A
THR
123
n
90
THR
123
A
GLY
124
n
91
GLY
124
A
GLY
198
n
92
GLY
198
A
SER
199
n
93
SER
199
A
VAL
200
n
94
VAL
200
A
ILE
201
n
95
ILE
201
A
THR
202
n
96
THR
202
A
GLN
203
n
97
GLN
203
A
ALA
204
n
98
ALA
204
A
CYS
205
n
99
CYS
205
A
PRO
206
n
100
PRO
206
A
LYS
207
n
101
LYS
207
A
VAL
208
n
102
VAL
208
A
SER
209
n
103
SER
209
A
PHE
210
n
104
PHE
210
A
GLU
211
n
105
GLU
211
A
PRO
212
n
106
PRO
212
A
ILE
213
n
107
ILE
213
A
PRO
214
n
108
PRO
214
A
ILE
215
n
109
ILE
215
A
HIS
216
n
110
HIS
216
A
TYR
217
n
111
TYR
217
A
CYS
218
n
112
CYS
218
A
ALA
219
n
113
ALA
219
A
PRO
220
n
114
PRO
220
A
ALA
221
n
115
ALA
221
A
GLY
222
n
116
GLY
222
A
PHE
223
n
117
PHE
223
A
ALA
224
n
118
ALA
224
A
ILE
225
n
119
ILE
225
A
LEU
226
n
120
LEU
226
A
LYS
227
n
121
LYS
227
A
CYS
228
n
122
CYS
228
A
ASN
229
n
123
ASN
229
A
ASN
230
n
124
ASN
230
A
LYS
231
n
125
LYS
231
A
THR
232
n
126
THR
232
A
PHE
233
n
127
PHE
233
A
ASN
234
n
128
ASN
234
A
GLY
235
n
129
GLY
235
A
THR
236
n
130
THR
236
A
GLY
237
n
131
GLY
237
A
PRO
238
n
132
PRO
238
A
CYS
239
n
133
CYS
239
A
THR
240
n
134
THR
240
A
ASN
241
n
135
ASN
241
A
VAL
242
n
136
VAL
242
A
SER
243
n
137
SER
243
A
THR
244
n
138
THR
244
A
VAL
245
n
139
VAL
245
A
GLN
246
n
140
GLN
246
A
CYS
247
n
141
CYS
247
A
THR
248
n
142
THR
248
A
HIS
249
n
143
HIS
249
A
GLY
250
n
144
GLY
250
A
ILE
251
n
145
ILE
251
A
ARG
252
n
146
ARG
252
A
PRO
253
n
147
PRO
253
A
VAL
254
n
148
VAL
254
A
VAL
255
n
149
VAL
255
A
SER
256
n
150
SER
256
A
SER
257
n
151
SER
257
A
GLN
258
n
152
GLN
258
A
LEU
259
n
153
LEU
259
A
LEU
260
n
154
LEU
260
A
LEU
261
n
155
LEU
261
A
ASN
262
n
156
ASN
262
A
GLY
263
n
157
GLY
263
A
SER
264
n
158
SER
264
A
LEU
265
n
159
LEU
265
A
ALA
266
n
160
ALA
266
A
GLU
267
n
161
GLU
267
A
GLU
268
n
162
GLU
268
A
GLU
269
n
163
GLU
269
A
VAL
270
n
164
VAL
270
A
VAL
271
n
165
VAL
271
A
ILE
272
n
166
ILE
272
A
ARG
273
n
167
ARG
273
A
SER
274
n
168
SER
274
A
VAL
275
n
169
VAL
275
A
ASN
276
n
170
ASN
276
A
PHE
277
n
171
PHE
277
A
THR
278
n
172
THR
278
A
ASP
279
n
173
ASP
279
A
ASN
280
n
174
ASN
280
A
ALA
281
n
175
ALA
281
A
LYS
282
n
176
LYS
282
A
THR
283
n
177
THR
283
A
ILE
284
n
178
ILE
284
A
ILE
285
n
179
ILE
285
A
VAL
286
n
180
VAL
286
A
GLN
287
n
181
GLN
287
A
LEU
288
n
182
LEU
288
A
ASN
289
n
183
ASN
289
A
THR
290
n
184
THR
290
A
SER
291
n
185
SER
291
A
VAL
292
n
186
VAL
292
A
GLU
293
n
187
GLU
293
A
ILE
294
n
188
ILE
294
A
ASN
295
n
189
ASN
295
A
CYS
296
n
190
CYS
296
A
THR
297
n
191
THR
297
A
GLY
298
n
192
GLY
298
A
ALA
299
n
193
ALA
299
A
GLY
329
n
194
GLY
329
A
HIS
330
n
195
HIS
330
A
CYS
331
n
196
CYS
331
A
ASN
332
n
197
ASN
332
A
ILE
333
n
198
ILE
333
A
ALA
334
n
199
ALA
334
A
ARG
335
n
200
ARG
335
A
ALA
336
n
201
ALA
336
A
LYS
337
n
202
LYS
337
A
TRP
338
n
203
TRP
338
A
ASN
339
n
204
ASN
339
A
ASN
340
n
205
ASN
340
A
THR
341
n
206
THR
341
A
LEU
342
n
207
LEU
342
A
LYS
343
n
208
LYS
343
A
GLN
344
n
209
GLN
344
A
ILE
345
n
210
ILE
345
A
ALA
346
n
211
ALA
346
A
SER
347
n
212
SER
347
A
LYS
348
n
213
LYS
348
A
LEU
349
n
214
LEU
349
A
ARG
350
n
215
ARG
350
A
GLU
351
n
216
GLU
351
A
GLN
352
n
217
GLN
352
A
PHE
353
n
218
PHE
353
A
GLY
354
n
219
GLY
354
A
ASN
355
n
220
ASN
355
A
ASN
356
n
221
ASN
356
A
LYS
357
n
222
LYS
357
A
THR
358
n
223
THR
358
A
ILE
359
n
224
ILE
359
A
ILE
360
n
225
ILE
360
A
PHE
361
n
226
PHE
361
A
LYS
362
n
227
LYS
362
A
GLN
363
n
228
GLN
363
A
SER
364
n
229
SER
364
A
SER
365
n
230
SER
365
A
GLY
366
n
231
GLY
366
A
GLY
367
n
232
GLY
367
A
ASP
368
n
233
ASP
368
A
PRO
369
n
234
PRO
369
A
GLU
370
n
235
GLU
370
A
ILE
371
n
236
ILE
371
A
VAL
372
n
237
VAL
372
A
THR
373
n
238
THR
373
A
HIS
374
n
239
HIS
374
A
TRP
375
n
240
TRP
375
A
PHE
376
n
241
PHE
376
A
ASN
377
n
242
ASN
377
A
CYS
378
n
243
CYS
378
A
GLY
379
n
244
GLY
379
A
GLY
380
n
245
GLY
380
A
GLU
381
n
246
GLU
381
A
PHE
382
n
247
PHE
382
A
PHE
383
n
248
PHE
383
A
TYR
384
n
249
TYR
384
A
CYS
385
n
250
CYS
385
A
ASN
386
n
251
ASN
386
A
SER
387
n
252
SER
387
A
THR
388
n
253
THR
388
A
GLN
389
n
254
GLN
389
A
LEU
390
n
255
LEU
390
A
PHE
391
n
256
PHE
391
A
ASN
392
n
257
ASN
392
A
SER
393
n
258
SER
393
A
THR
394
n
259
THR
394
A
TRP
395
n
260
TRP
395
A
PHE
396
n
261
PHE
396
A
ASN
397
n
262
ASN
397
A
SER
398
n
263
SER
398
A
THR
399
n
264
THR
399
A
n
265
405
A
n
266
406
A
n
267
407
A
n
268
408
A
GLU
409
n
269
GLU
409
A
GLY
410
n
270
GLY
410
A
SER
411
n
271
SER
411
A
ASP
412
n
272
ASP
412
A
THR
413
n
273
THR
413
A
ILE
414
n
274
ILE
414
A
THR
415
n
275
THR
415
A
LEU
416
n
276
LEU
416
A
PRO
417
n
277
PRO
417
A
CYS
418
n
278
CYS
418
A
ARG
419
n
279
ARG
419
A
ILE
420
n
280
ILE
420
A
LYS
421
n
281
LYS
421
A
GLN
422
n
282
GLN
422
A
ILE
423
n
283
ILE
423
A
ILE
424
n
284
ILE
424
A
ASN
425
n
285
ASN
425
A
MET
426
n
286
MET
426
A
TRP
427
n
287
TRP
427
A
GLN
428
n
288
GLN
428
A
LYS
429
n
289
LYS
429
A
VAL
430
n
290
VAL
430
A
GLY
431
n
291
GLY
431
A
LYS
432
n
292
LYS
432
A
ALA
433
n
293
ALA
433
A
MET
434
n
294
MET
434
A
TYR
435
n
295
TYR
435
A
ALA
436
n
296
ALA
436
A
PRO
437
n
297
PRO
437
A
PRO
438
n
298
PRO
438
A
ILE
439
n
299
ILE
439
A
SER
440
n
300
SER
440
A
GLY
441
n
301
GLY
441
A
GLN
442
n
302
GLN
442
A
ILE
443
n
303
ILE
443
A
ARG
444
n
304
ARG
444
A
CYS
445
n
305
CYS
445
A
SER
446
n
306
SER
446
A
SER
447
n
307
SER
447
A
ASN
448
n
308
ASN
448
A
ILE
449
n
309
ILE
449
A
THR
450
n
310
THR
450
A
GLY
451
n
311
GLY
451
A
LEU
452
n
312
LEU
452
A
LEU
453
n
313
LEU
453
A
LEU
454
n
314
LEU
454
A
THR
455
n
315
THR
455
A
ARG
456
n
316
ARG
456
A
ASP
457
n
317
ASP
457
A
GLY
458
n
318
GLY
458
A
GLY
459
n
319
GLY
459
A
ASN
460
n
320
ASN
460
A
SER
461
n
321
SER
461
A
ASN
462
n
322
ASN
462
A
ASN
463
n
323
ASN
463
A
GLU
464
n
324
GLU
464
A
SER
465
n
325
SER
465
A
GLU
466
n
326
GLU
466
A
ILE
467
n
327
ILE
467
A
PHE
468
n
328
PHE
468
A
ARG
469
n
329
ARG
469
A
PRO
470
n
330
PRO
470
A
GLY
471
n
331
GLY
471
A
GLY
472
n
332
GLY
472
A
GLY
473
n
333
GLY
473
A
ASP
474
n
334
ASP
474
A
MET
475
n
335
MET
475
A
ARG
476
n
336
ARG
476
A
ASP
477
n
337
ASP
477
A
ASN
478
n
338
ASN
478
A
TRP
479
n
339
TRP
479
A
ARG
480
n
340
ARG
480
A
SER
481
n
341
SER
481
A
GLU
482
n
342
GLU
482
A
LEU
483
n
343
LEU
483
A
TYR
484
n
344
TYR
484
A
LYS
485
n
345
LYS
485
A
TYR
486
n
346
TYR
486
A
LYS
487
n
347
LYS
487
A
VAL
488
n
348
VAL
488
A
VAL
489
n
349
VAL
489
A
LYS
490
n
350
LYS
490
A
ILE
491
n
351
ILE
491
A
GLU
492
n
352
GLU
492
A
PRO
493
n
353
PRO
493
A
LEU
494
n
354
LEU
494
A
GLY
495
n
355
GLY
495
A
VAL
496
n
356
VAL
496
A
ALA
497
n
357
ALA
497
A
MET
1000
n
1
MET
1000
C
LYS
1001
n
2
LYS
1001
C
LYS
1002
n
3
LYS
1002
C
VAL
1003
n
4
VAL
1003
C
VAL
1004
n
5
VAL
1004
C
LEU
1005
n
6
LEU
1005
C
GLY
1006
n
7
GLY
1006
C
LYS
1007
n
8
LYS
1007
C
LYS
1008
n
9
LYS
1008
C
GLY
1009
n
10
GLY
1009
C
ASP
1010
n
11
ASP
1010
C
THR
1011
n
12
THR
1011
C
VAL
1012
n
13
VAL
1012
C
GLU
1013
n
14
GLU
1013
C
LEU
1014
n
15
LEU
1014
C
THR
1015
n
16
THR
1015
C
CYS
1016
n
17
CYS
1016
C
THR
1017
n
18
THR
1017
C
ALA
1018
n
19
ALA
1018
C
SER
1019
n
20
SER
1019
C
GLN
1020
n
21
GLN
1020
C
LYS
1021
n
22
LYS
1021
C
LYS
1022
n
23
LYS
1022
C
SER
1023
n
24
SER
1023
C
ILE
1024
n
25
ILE
1024
C
GLN
1025
n
26
GLN
1025
C
PHE
1026
n
27
PHE
1026
C
HIS
1027
n
28
HIS
1027
C
TRP
1028
n
29
TRP
1028
C
LYS
1029
n
30
LYS
1029
C
ASN
1030
n
31
ASN
1030
C
SER
1031
n
32
SER
1031
C
ASN
1032
n
33
ASN
1032
C
GLN
1033
n
34
GLN
1033
C
ILE
1034
n
35
ILE
1034
C
LYS
1035
n
36
LYS
1035
C
ILE
1036
n
37
ILE
1036
C
LEU
1037
n
38
LEU
1037
C
GLY
1038
n
39
GLY
1038
C
ASN
1039
n
40
ASN
1039
C
GLN
1040
n
41
GLN
1040
C
GLY
1041
n
42
GLY
1041
C
SER
1042
n
43
SER
1042
C
PHE
1043
n
44
PHE
1043
C
LEU
1044
n
45
LEU
1044
C
THR
1045
n
46
THR
1045
C
LYS
1046
n
47
LYS
1046
C
GLY
1047
n
48
GLY
1047
C
PRO
1048
n
49
PRO
1048
C
SER
1049
n
50
SER
1049
C
LYS
1050
n
51
LYS
1050
C
LEU
1051
n
52
LEU
1051
C
ASN
1052
n
53
ASN
1052
C
ASP
1053
n
54
ASP
1053
C
ARG
1054
n
55
ARG
1054
C
ALA
1055
n
56
ALA
1055
C
ASP
1056
n
57
ASP
1056
C
SER
1057
n
58
SER
1057
C
ARG
1058
n
59
ARG
1058
C
ARG
1059
n
60
ARG
1059
C
SER
1060
n
61
SER
1060
C
LEU
1061
n
62
LEU
1061
C
TRP
1062
n
63
TRP
1062
C
ASP
1063
n
64
ASP
1063
C
GLN
1064
n
65
GLN
1064
C
GLY
1065
n
66
GLY
1065
C
ASN
1066
n
67
ASN
1066
C
PHE
1067
n
68
PHE
1067
C
PRO
1068
n
69
PRO
1068
C
LEU
1069
n
70
LEU
1069
C
ILE
1070
n
71
ILE
1070
C
ILE
1071
n
72
ILE
1071
C
LYS
1072
n
73
LYS
1072
C
ASN
1073
n
74
ASN
1073
C
LEU
1074
n
75
LEU
1074
C
LYS
1075
n
76
LYS
1075
C
ILE
1076
n
77
ILE
1076
C
GLU
1077
n
78
GLU
1077
C
ASP
1078
n
79
ASP
1078
C
SER
1079
n
80
SER
1079
C
ASP
1080
n
81
ASP
1080
C
THR
1081
n
82
THR
1081
C
TYR
1082
n
83
TYR
1082
C
ILE
1083
n
84
ILE
1083
C
CYS
1084
n
85
CYS
1084
C
GLU
1085
n
86
GLU
1085
C
VAL
1086
n
87
VAL
1086
C
GLU
1087
n
88
GLU
1087
C
ASP
1088
n
89
ASP
1088
C
GLN
1089
n
90
GLN
1089
C
LYS
1090
n
91
LYS
1090
C
GLU
1091
n
92
GLU
1091
C
GLU
1092
n
93
GLU
1092
C
VAL
1093
n
94
VAL
1093
C
GLN
1094
n
95
GLN
1094
C
LEU
1095
n
96
LEU
1095
C
LEU
1096
n
97
LEU
1096
C
VAL
1097
n
98
VAL
1097
C
PHE
1098
n
99
PHE
1098
C
GLY
1099
n
100
GLY
1099
C
LEU
1100
n
101
LEU
1100
C
THR
1101
n
102
THR
1101
C
ALA
1102
n
103
ALA
1102
C
ASN
1103
n
104
ASN
1103
C
SER
1104
n
105
SER
1104
C
ASP
1105
n
106
ASP
1105
C
THR
1106
n
107
THR
1106
C
HIS
1107
n
108
HIS
1107
C
LEU
1108
n
109
LEU
1108
C
LEU
1109
n
110
LEU
1109
C
GLN
1110
n
111
GLN
1110
C
GLY
1111
n
112
GLY
1111
C
GLN
1112
n
113
GLN
1112
C
SER
1113
n
114
SER
1113
C
LEU
1114
n
115
LEU
1114
C
THR
1115
n
116
THR
1115
C
LEU
1116
n
117
LEU
1116
C
THR
1117
n
118
THR
1117
C
LEU
1118
n
119
LEU
1118
C
GLU
1119
n
120
GLU
1119
C
SER
1120
n
121
SER
1120
C
PRO
1121
n
122
PRO
1121
C
PRO
1122
n
123
PRO
1122
C
GLY
1123
n
124
GLY
1123
C
SER
1124
n
125
SER
1124
C
SER
1125
n
126
SER
1125
C
PRO
1126
n
127
PRO
1126
C
SER
1127
n
128
SER
1127
C
VAL
1128
n
129
VAL
1128
C
GLN
1129
n
130
GLN
1129
C
CYS
1130
n
131
CYS
1130
C
ARG
1131
n
132
ARG
1131
C
SER
1132
n
133
SER
1132
C
PRO
1133
n
134
PRO
1133
C
ARG
1134
n
135
ARG
1134
C
GLY
1135
n
136
GLY
1135
C
LYS
1136
n
137
LYS
1136
C
ASN
1137
n
138
ASN
1137
C
ILE
1138
n
139
ILE
1138
C
GLN
1139
n
140
GLN
1139
C
GLY
1140
n
141
GLY
1140
C
GLY
1141
n
142
GLY
1141
C
LYS
1142
n
143
LYS
1142
C
THR
1143
n
144
THR
1143
C
LEU
1144
n
145
LEU
1144
C
SER
1145
n
146
SER
1145
C
VAL
1146
n
147
VAL
1146
C
SER
1147
n
148
SER
1147
C
GLN
1148
n
149
GLN
1148
C
LEU
1149
n
150
LEU
1149
C
GLU
1150
n
151
GLU
1150
C
LEU
1151
n
152
LEU
1151
C
GLN
1152
n
153
GLN
1152
C
ASP
1153
n
154
ASP
1153
C
SER
1154
n
155
SER
1154
C
GLY
1155
n
156
GLY
1155
C
THR
1156
n
157
THR
1156
C
TRP
1157
n
158
TRP
1157
C
THR
1158
n
159
THR
1158
C
CYS
1159
n
160
CYS
1159
C
THR
1160
n
161
THR
1160
C
VAL
1161
n
162
VAL
1161
C
LEU
1162
n
163
LEU
1162
C
GLN
1163
n
164
GLN
1163
C
ASN
1164
n
165
ASN
1164
C
GLN
1165
n
166
GLN
1165
C
LYS
1166
n
167
LYS
1166
C
LYS
1167
n
168
LYS
1167
C
VAL
1168
n
169
VAL
1168
C
GLU
1169
n
170
GLU
1169
C
PHE
1170
n
171
PHE
1170
C
LYS
1171
n
172
LYS
1171
C
ILE
1172
n
173
ILE
1172
C
ASP
1173
n
174
ASP
1173
C
ILE
1174
n
175
ILE
1174
C
VAL
1175
n
176
VAL
1175
C
VAL
1176
n
177
VAL
1176
C
LEU
1177
n
178
LEU
1177
C
ALA
1178
n
179
ALA
1178
C
PHE
1179
n
180
PHE
1179
C
GLN
1180
n
181
GLN
1180
C
LYS
1181
n
182
LYS
1181
C
ALA
1182
n
183
ALA
1182
C
SER
1183
n
184
SER
1183
C
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
GLN
3
n
3
GLN
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
SER
9
n
9
SER
9
L
SER
10
n
10
SER
10
L
VAL
11
n
11
VAL
11
L
SER
12
n
12
SER
12
L
ALA
13
n
13
ALA
13
L
SER
14
n
14
SER
14
L
VAL
15
n
15
VAL
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
ARG
18
n
18
ARG
18
L
VAL
19
n
19
VAL
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
ASP
28
n
28
ASP
28
L
ILE
29
n
29
ILE
29
L
SER
30
n
30
SER
30
L
THR
31
n
31
THR
31
L
TRP
32
n
32
TRP
32
L
LEU
33
n
33
LEU
33
L
ALA
34
n
34
ALA
34
L
TRP
35
n
35
TRP
35
L
TYR
36
n
36
TYR
36
L
GLN
37
n
37
GLN
37
L
GLN
38
n
38
GLN
38
L
LYS
39
n
39
LYS
39
L
PRO
40
n
40
PRO
40
L
GLY
41
n
41
GLY
41
L
LYS
42
n
42
LYS
42
L
ALA
43
n
43
ALA
43
L
PRO
44
n
44
PRO
44
L
LYS
45
n
45
LYS
45
L
LEU
46
n
46
LEU
46
L
LEU
47
n
47
LEU
47
L
ILE
48
n
48
ILE
48
L
TYR
49
n
49
TYR
49
L
ALA
50
n
50
ALA
50
L
ALA
51
n
51
ALA
51
L
SER
52
n
52
SER
52
L
THR
53
n
53
THR
53
L
LEU
54
n
54
LEU
54
L
GLN
55
n
55
GLN
55
L
SER
56
n
56
SER
56
L
GLY
57
n
57
GLY
57
L
VAL
58
n
58
VAL
58
L
PRO
59
n
59
PRO
59
L
SER
60
n
60
SER
60
L
ARG
61
n
61
ARG
61
L
PHE
62
n
62
PHE
62
L
SER
63
n
63
SER
63
L
GLY
64
n
64
GLY
64
L
SER
65
n
65
SER
65
L
GLY
66
n
66
GLY
66
L
SER
67
n
67
SER
67
L
GLY
68
n
68
GLY
68
L
THR
69
n
69
THR
69
L
ASP
70
n
70
ASP
70
L
PHE
71
n
71
PHE
71
L
SER
72
n
72
SER
72
L
LEU
73
n
73
LEU
73
L
THR
74
n
74
THR
74
L
ILE
75
n
75
ILE
75
L
ASN
76
n
76
ASN
76
L
SER
77
n
77
SER
77
L
LEU
78
n
78
LEU
78
L
GLN
79
n
79
GLN
79
L
PRO
80
n
80
PRO
80
L
GLU
81
n
81
GLU
81
L
ASP
82
n
82
ASP
82
L
PHE
83
n
83
PHE
83
L
ALA
84
n
84
ALA
84
L
THR
85
n
85
THR
85
L
TYR
86
n
86
TYR
86
L
TYR
87
n
87
TYR
87
L
CYS
88
n
88
CYS
88
L
GLN
89
n
89
GLN
89
L
GLN
90
n
90
GLN
90
L
ALA
91
n
91
ALA
91
L
ASN
92
n
92
ASN
92
L
SER
93
n
93
SER
93
L
PHE
94
n
94
PHE
94
L
PHE
96
n
95
PHE
96
L
THR
97
n
96
THR
97
L
PHE
98
n
97
PHE
98
L
GLY
99
n
98
GLY
99
L
GLY
100
n
99
GLY
100
L
GLY
101
n
100
GLY
101
L
THR
102
n
101
THR
102
L
LYS
103
n
102
LYS
103
L
VAL
104
n
103
VAL
104
L
GLU
105
n
104
GLU
105
L
ILE
106
n
105
ILE
106
L
LYS
107
n
106
LYS
107
L
ARG
108
n
107
ARG
108
L
THR
109
n
108
THR
109
L
VAL
110
n
109
VAL
110
L
ALA
111
n
110
ALA
111
L
ALA
112
n
111
ALA
112
L
PRO
113
n
112
PRO
113
L
SER
114
n
113
SER
114
L
VAL
115
n
114
VAL
115
L
PHE
116
n
115
PHE
116
L
ILE
117
n
116
ILE
117
L
PHE
118
n
117
PHE
118
L
PRO
119
n
118
PRO
119
L
PRO
120
n
119
PRO
120
L
SER
121
n
120
SER
121
L
ASP
122
n
121
ASP
122
L
GLU
123
n
122
GLU
123
L
GLN
124
n
123
GLN
124
L
LEU
125
n
124
LEU
125
L
LYS
126
n
125
LYS
126
L
SER
127
n
126
SER
127
L
GLY
128
n
127
GLY
128
L
THR
129
n
128
THR
129
L
ALA
130
n
129
ALA
130
L
SER
131
n
130
SER
131
L
VAL
132
n
131
VAL
132
L
VAL
133
n
132
VAL
133
L
CYS
134
n
133
CYS
134
L
LEU
135
n
134
LEU
135
L
LEU
136
n
135
LEU
136
L
ASN
137
n
136
ASN
137
L
ASN
138
n
137
ASN
138
L
PHE
139
n
138
PHE
139
L
TYR
140
n
139
TYR
140
L
PRO
141
n
140
PRO
141
L
ARG
142
n
141
ARG
142
L
GLU
143
n
142
GLU
143
L
ALA
144
n
143
ALA
144
L
LYS
145
n
144
LYS
145
L
VAL
146
n
145
VAL
146
L
GLN
147
n
146
GLN
147
L
TRP
148
n
147
TRP
148
L
LYS
149
n
148
LYS
149
L
VAL
150
n
149
VAL
150
L
ASP
151
n
150
ASP
151
L
ASN
152
n
151
ASN
152
L
ALA
153
n
152
ALA
153
L
LEU
154
n
153
LEU
154
L
GLN
155
n
154
GLN
155
L
SER
156
n
155
SER
156
L
GLY
157
n
156
GLY
157
L
ASN
158
n
157
ASN
158
L
SER
159
n
158
SER
159
L
GLN
160
n
159
GLN
160
L
GLU
161
n
160
GLU
161
L
SER
162
n
161
SER
162
L
VAL
163
n
162
VAL
163
L
THR
164
n
163
THR
164
L
GLU
165
n
164
GLU
165
L
GLN
166
n
165
GLN
166
L
ASP
167
n
166
ASP
167
L
SER
168
n
167
SER
168
L
LYS
169
n
168
LYS
169
L
ASP
170
n
169
ASP
170
L
SER
171
n
170
SER
171
L
THR
172
n
171
THR
172
L
TYR
173
n
172
TYR
173
L
SER
174
n
173
SER
174
L
LEU
175
n
174
LEU
175
L
SER
176
n
175
SER
176
L
SER
177
n
176
SER
177
L
THR
178
n
177
THR
178
L
LEU
179
n
178
LEU
179
L
THR
180
n
179
THR
180
L
LEU
181
n
180
LEU
181
L
SER
182
n
181
SER
182
L
LYS
183
n
182
LYS
183
L
ALA
184
n
183
ALA
184
L
ASP
185
n
184
ASP
185
L
TYR
186
n
185
TYR
186
L
GLU
187
n
186
GLU
187
L
LYS
188
n
187
LYS
188
L
HIS
189
n
188
HIS
189
L
LYS
190
n
189
LYS
190
L
LEU
191
n
190
LEU
191
L
TYR
192
n
191
TYR
192
L
ALA
193
n
192
ALA
193
L
CYS
194
n
193
CYS
194
L
GLU
195
n
194
GLU
195
L
VAL
196
n
195
VAL
196
L
THR
197
n
196
THR
197
L
HIS
198
n
197
HIS
198
L
GLN
199
n
198
GLN
199
L
GLY
200
n
199
GLY
200
L
LEU
201
n
200
LEU
201
L
SER
202
n
201
SER
202
L
SER
203
n
202
SER
203
L
PRO
204
n
203
PRO
204
L
VAL
205
n
204
VAL
205
L
THR
206
n
205
THR
206
L
LYS
207
n
206
LYS
207
L
SER
208
n
207
SER
208
L
PHE
209
n
208
PHE
209
L
ASN
210
n
209
ASN
210
L
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
VAL
11
n
11
VAL
11
H
LYS
12
n
12
LYS
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
ALA
16
n
16
ALA
16
H
THR
17
n
17
THR
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
ILE
20
n
20
ILE
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
SER
30
n
30
SER
30
H
ASP
31
n
31
ASP
31
H
PHE
32
n
32
PHE
32
H
TYR
33
n
33
TYR
33
H
MET
34
n
34
MET
34
H
TYR
35
n
35
TYR
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
ALA
40
n
40
ALA
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
LYS
43
n
43
LYS
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
MET
48
n
48
MET
48
H
GLY
49
n
49
GLY
49
H
LEU
50
n
50
LEU
50
H
ILE
51
n
51
ILE
51
H
ASP
52
n
52
ASP
52
H
PRO
52
n
53
A
PRO
52
H
GLU
53
n
54
GLU
53
H
ASP
54
n
55
ASP
54
H
ALA
55
n
56
ALA
55
H
ASP
56
n
57
ASP
56
H
THR
57
n
58
THR
57
H
MET
58
n
59
MET
58
H
TYR
59
n
60
TYR
59
H
ALA
60
n
61
ALA
60
H
GLU
61
n
62
GLU
61
H
LYS
62
n
63
LYS
62
H
PHE
63
n
64
PHE
63
H
ARG
64
n
65
ARG
64
H
GLY
65
n
66
GLY
65
H
ARG
66
n
67
ARG
66
H
VAL
67
n
68
VAL
67
H
THR
68
n
69
THR
68
H
ILE
69
n
70
ILE
69
H
THR
70
n
71
THR
70
H
ALA
71
n
72
ALA
71
H
ASP
72
n
73
ASP
72
H
THR
73
n
74
THR
73
H
SER
74
n
75
SER
74
H
THR
75
n
76
THR
75
H
ASP
76
n
77
ASP
76
H
THR
77
n
78
THR
77
H
GLY
78
n
79
GLY
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLU
81
n
82
GLU
81
H
LEU
82
n
83
LEU
82
H
SER
82
n
84
A
SER
82
H
SER
82
n
85
B
SER
82
H
LEU
82
n
86
C
LEU
82
H
ARG
83
n
87
ARG
83
H
SER
84
n
88
SER
84
H
GLU
85
n
89
GLU
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
VAL
89
n
93
VAL
89
H
TYR
90
n
94
TYR
90
H
TYR
91
n
95
TYR
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ALA
94
n
98
ALA
94
H
ASP
95
n
99
ASP
95
H
PRO
96
n
100
PRO
96
H
TRP
97
n
101
TRP
97
H
GLU
98
n
102
GLU
98
H
LEU
99
n
103
LEU
99
H
ASN
100
n
104
ASN
100
H
ALA
100
n
105
A
ALA
100
H
PHE
100
n
106
B
PHE
100
H
ASN
101
n
107
ASN
101
H
VAL
102
n
108
VAL
102
H
TRP
103
n
109
TRP
103
H
GLY
104
n
110
GLY
104
H
GLN
105
n
111
GLN
105
H
GLY
106
n
112
GLY
106
H
THR
107
n
113
THR
107
H
LEU
108
n
114
LEU
108
H
VAL
109
n
115
VAL
109
H
SER
110
n
116
SER
110
H
VAL
111
n
117
VAL
111
H
SER
112
n
118
SER
112
H
SER
113
n
119
SER
113
H
ALA
114
n
120
ALA
114
H
SER
115
n
121
SER
115
H
THR
116
n
122
THR
116
H
LYS
117
n
123
LYS
117
H
GLY
118
n
124
GLY
118
H
PRO
119
n
125
PRO
119
H
SER
120
n
126
SER
120
H
VAL
121
n
127
VAL
121
H
PHE
122
n
128
PHE
122
H
PRO
123
n
129
PRO
123
H
LEU
124
n
130
LEU
124
H
ALA
125
n
131
ALA
125
H
PRO
126
n
132
PRO
126
H
SER
127
n
133
SER
127
H
SER
128
n
134
SER
128
H
LYS
129
n
135
LYS
129
H
SER
130
n
136
SER
130
H
THR
131
n
137
THR
131
H
SER
132
n
138
SER
132
H
GLY
133
n
139
GLY
133
H
GLY
134
n
140
GLY
134
H
THR
135
n
141
THR
135
H
ALA
136
n
142
ALA
136
H
ALA
137
n
143
ALA
137
H
LEU
138
n
144
LEU
138
H
GLY
139
n
145
GLY
139
H
CYS
140
n
146
CYS
140
H
LEU
141
n
147
LEU
141
H
VAL
142
n
148
VAL
142
H
LYS
143
n
149
LYS
143
H
ASP
144
n
150
ASP
144
H
TYR
145
n
151
TYR
145
H
PHE
146
n
152
PHE
146
H
PRO
147
n
153
PRO
147
H
GLU
148
n
154
GLU
148
H
PRO
149
n
155
PRO
149
H
VAL
150
n
156
VAL
150
H
THR
151
n
157
THR
151
H
VAL
152
n
158
VAL
152
H
SER
153
n
159
SER
153
H
TRP
154
n
160
TRP
154
H
ASN
155
n
161
ASN
155
H
SER
156
n
162
SER
156
H
GLY
157
n
163
GLY
157
H
ALA
158
n
164
ALA
158
H
LEU
159
n
165
LEU
159
H
THR
160
n
166
THR
160
H
SER
161
n
167
SER
161
H
GLY
162
n
168
GLY
162
H
VAL
163
n
169
VAL
163
H
HIS
164
n
170
HIS
164
H
THR
165
n
171
THR
165
H
PHE
166
n
172
PHE
166
H
PRO
167
n
173
PRO
167
H
ALA
168
n
174
ALA
168
H
VAL
169
n
175
VAL
169
H
LEU
170
n
176
LEU
170
H
GLN
171
n
177
GLN
171
H
SER
172
n
178
SER
172
H
SER
173
n
179
SER
173
H
GLY
174
n
180
GLY
174
H
LEU
175
n
181
LEU
175
H
TYR
176
n
182
TYR
176
H
SER
177
n
183
SER
177
H
LEU
178
n
184
LEU
178
H
SER
179
n
185
SER
179
H
SER
180
n
186
SER
180
H
VAL
181
n
187
VAL
181
H
VAL
182
n
188
VAL
182
H
THR
183
n
189
THR
183
H
VAL
184
n
190
VAL
184
H
PRO
185
n
191
PRO
185
H
SER
186
n
192
SER
186
H
SER
187
n
193
SER
187
H
SER
188
n
194
SER
188
H
LEU
189
n
195
LEU
189
H
GLY
190
n
196
GLY
190
H
THR
191
n
197
THR
191
H
GLN
192
n
198
GLN
192
H
THR
193
n
199
THR
193
H
TYR
194
n
200
TYR
194
H
ILE
195
n
201
ILE
195
H
CYS
196
n
202
CYS
196
H
ASN
197
n
203
ASN
197
H
VAL
198
n
204
VAL
198
H
ASN
199
n
205
ASN
199
H
HIS
200
n
206
HIS
200
H
LYS
201
n
207
LYS
201
H
PRO
202
n
208
PRO
202
H
SER
203
n
209
SER
203
H
ASN
204
n
210
ASN
204
H
THR
205
n
211
THR
205
H
LYS
206
n
212
LYS
206
H
VAL
207
n
213
VAL
207
H
ASP
208
n
214
ASP
208
H
LYS
209
n
215
LYS
209
H
LYS
210
n
216
LYS
210
H
VAL
211
n
217
VAL
211
H
GLU
212
n
218
GLU
212
H
PRO
213
n
219
PRO
213
H
LYS
214
n
220
LYS
214
H
-0.5305
0.0481
0.2811
1.7208
-0.1819
0.8536
-0.0635
0.1448
-0.0199
0.1469
0.1309
-0.0956
-0.0040
-0.0390
-0.0483
0.6534
0.0611
0.0232
0.8558
-0.0495
0.9736
refined
31.2392
99.9848
2.7753
X-RAY DIFFRACTION
1.6436
-0.3839
0.6786
-1.5750
-0.5224
1.0459
-0.1587
0.0532
-0.2957
0.1845
0.3829
-0.2279
-0.2230
-0.0197
-0.1654
1.0663
0.0942
-0.1914
0.8844
-0.0468
1.3901
refined
47.4118
81.3612
17.3561
X-RAY DIFFRACTION
0.2744
-0.2597
-0.0844
3.4358
-0.4441
0.5061
-0.2251
-0.0172
0.1645
0.5407
-0.5261
-1.0880
-0.1918
0.0885
0.6269
1.5371
0.1863
-0.1642
1.2432
0.0385
1.6134
refined
62.7450
51.8560
24.8424
X-RAY DIFFRACTION
-0.0807
1.3961
-0.6671
2.2089
-0.7486
2.1682
-0.0138
0.1155
0.2810
0.1769
0.2869
0.3733
0.1322
-0.6799
-0.2686
1.2692
-0.2517
0.1379
1.3226
0.1783
1.5627
refined
-2.3277
67.2485
17.7981
X-RAY DIFFRACTION
3.4375
1.8066
-0.6319
2.6499
-2.1732
1.3500
0.2117
0.1462
0.1734
0.7799
0.1944
0.2164
-0.5895
-0.0032
-0.3588
1.5427
-0.1238
0.3486
1.4695
0.3542
1.8585
refined
-3.2945
41.4538
42.3159
X-RAY DIFFRACTION
0.5317
-1.3075
-0.3285
1.9418
-1.8824
2.0697
0.1279
-0.1244
-0.2702
-0.6655
-0.0508
0.1734
0.6397
0.3741
-0.0555
1.3401
-0.0091
0.1292
1.1421
0.2273
1.2837
refined
19.0724
60.3300
17.0840
X-RAY DIFFRACTION
3.4412
2.0105
-0.3385
4.1126
-1.2203
0.2628
-1.0950
-0.3626
-2.1145
-1.9837
0.5138
-0.0862
0.2320
0.1091
0.5287
2.1290
-0.0361
0.5087
1.5311
0.6985
2.8119
refined
3.2805
32.1630
30.3703
X-RAY DIFFRACTION
A
34
A
948
X-RAY DIFFRACTION
1
chain A
C
1000
C
1097
X-RAY DIFFRACTION
2
chain C and resid 1000:1097
C
1098
C
1183
X-RAY DIFFRACTION
3
chain C and resid 1098:1183
L
1
L
106
X-RAY DIFFRACTION
4
chain L and resid 1:106
L
107
L
211
X-RAY DIFFRACTION
5
chain L and resid 107:211
H
1
H
119
X-RAY DIFFRACTION
6
chain H and resid 1:119
H
120
H
221
X-RAY DIFFRACTION
7
chain H and resid 120:221
author_and_software_defined_assembly
PISA
4
tetrameric
10260
8
45770
A
ASN
88
GLYCOSYLATION SITE
A
ASN
55
ASN
A
ASN
230
GLYCOSYLATION SITE
A
ASN
124
ASN
A
ASN
234
GLYCOSYLATION SITE
A
ASN
128
ASN
A
ASN
241
GLYCOSYLATION SITE
A
ASN
135
ASN
A
ASN
262
GLYCOSYLATION SITE
A
ASN
156
ASN
A
ASN
276
GLYCOSYLATION SITE
A
ASN
170
ASN
A
ASN
289
GLYCOSYLATION SITE
A
ASN
183
ASN
A
ASN
386
GLYCOSYLATION SITE
A
ASN
251
ASN
A
ASN
392
GLYCOSYLATION SITE
A
ASN
257
ASN
A
ASN
397
GLYCOSYLATION SITE
A
ASN
262
ASN
A
ASN
448
GLYCOSYLATION SITE
A
ASN
308
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
40
A
N
TYR
7
A
O
ALA
497
A
O
ALA
357
A
N
LYS
46
A
N
LYS
13
A
O
LYS
490
A
O
LYS
350
A
O
VAL
489
A
O
VAL
349
A
N
ALA
224
A
N
ALA
118
A
N
LYS
227
A
N
LYS
121
A
O
SER
243
A
O
SER
137
A
O
THR
244
A
O
THR
138
A
N
VAL
84
A
N
VAL
51
A
N
GLU
91
A
N
GLU
58
A
O
CYS
239
A
O
CYS
133
A
O
SER
199
A
O
SER
93
A
N
THR
123
A
N
THR
90
A
N
LEU
122
A
N
LEU
89
A
O
LYS
432
A
O
LYS
292
A
O
ALA
433
A
O
ALA
293
A
N
ILE
424
A
N
ILE
284
C
N
VAL
1004
B
N
VAL
5
C
O
GLN
1094
B
O
GLN
95
C
O
VAL
1093
B
O
VAL
94
C
N
TYR
1082
B
N
TYR
83
C
O
GLU
1085
B
O
GLU
86
C
N
HIS
1027
B
N
HIS
28
C
N
TRP
1028
B
N
TRP
29
C
O
LEU
1037
B
O
LEU
38
C
N
GLY
1038
B
N
GLY
39
C
O
THR
1045
B
O
THR
46
C
N
VAL
1004
B
N
VAL
5
C
O
GLN
1094
B
O
GLN
95
C
N
GLY
1099
B
N
GLY
100
C
O
GLU
1119
B
O
GLU
120
C
N
LEU
1116
B
N
LEU
117
C
O
LEU
1144
B
O
LEU
145
C
N
LEU
1014
B
N
LEU
15
C
O
LEU
1069
B
O
LEU
70
C
O
ILE
1070
B
O
ILE
71
C
N
ASP
1056
B
N
ASP
57
C
N
HIS
1107
B
N
HIS
108
C
O
GLY
1111
B
O
GLY
112
C
O
ILE
1138
B
O
ILE
139
C
N
CYS
1130
B
N
CYS
131
C
N
GLN
1129
B
N
GLN
130
C
O
THR
1160
B
O
THR
161
C
N
VAL
1161
B
N
VAL
162
C
O
VAL
1168
B
O
VAL
169
L
N
THR
5
C
N
THR
5
L
O
ARG
24
C
O
ARG
24
L
N
ILE
21
C
N
ILE
21
L
O
LEU
73
C
O
LEU
73
L
O
THR
74
C
O
THR
74
L
N
SER
63
C
N
SER
63
L
N
VAL
11
C
N
VAL
11
L
O
LYS
103
C
O
LYS
102
L
O
THR
102
C
O
THR
101
L
N
TYR
86
C
N
TYR
86
L
O
TYR
87
C
O
TYR
87
L
N
TYR
36
C
N
TYR
36
L
N
GLN
37
C
N
GLN
37
L
O
LYS
45
C
O
LYS
45
L
N
TYR
49
C
N
TYR
49
L
O
THR
53
C
O
THR
53
L
N
PHE
118
C
N
PHE
117
L
O
VAL
133
C
O
VAL
132
L
N
LEU
136
C
N
LEU
135
L
O
LEU
175
C
O
LEU
174
L
O
THR
178
C
O
THR
177
L
N
GLN
160
C
N
GLN
159
L
O
ALA
153
C
O
ALA
152
L
N
VAL
150
C
N
VAL
149
L
N
LYS
145
C
N
LYS
144
L
O
THR
197
C
O
THR
196
L
N
VAL
196
C
N
VAL
195
L
O
VAL
205
C
O
VAL
204
H
N
VAL
5
D
N
VAL
5
H
O
LYS
23
D
O
LYS
23
H
N
VAL
18
D
N
VAL
18
H
O
LEU
82
D
O
LEU
83
H
O
GLU
81
D
O
GLU
82
H
N
THR
68
D
N
THR
69
H
N
LYS
12
D
N
LYS
12
H
O
SER
110
D
O
SER
116
H
O
VAL
109
D
O
VAL
115
H
N
ALA
88
D
N
ALA
92
H
O
TYR
91
D
O
TYR
95
H
N
VAL
37
D
N
VAL
37
H
N
ARG
38
D
N
ARG
38
H
O
GLU
46
D
O
GLU
46
H
N
ASP
52
D
N
ASP
52
H
O
ASP
56
D
O
ASP
57
H
N
LYS
12
D
N
LYS
12
H
O
SER
110
D
O
SER
116
H
O
VAL
109
D
O
VAL
115
H
N
ALA
88
D
N
ALA
92
H
N
ALA
94
D
N
ALA
98
H
O
VAL
102
D
O
VAL
108
H
N
SER
120
D
N
SER
126
H
O
LYS
143
D
O
LYS
149
H
N
ALA
136
D
N
ALA
142
H
O
VAL
184
D
O
VAL
190
H
O
VAL
181
D
O
VAL
187
H
N
HIS
164
D
N
HIS
170
H
N
SER
132
D
N
SER
138
H
O
THR
135
D
O
THR
141
H
N
TYR
145
D
N
TYR
151
H
O
TYR
176
D
O
TYR
182
H
O
SER
177
D
O
SER
183
H
N
VAL
169
D
N
VAL
175
H
N
SER
153
D
N
SER
159
H
O
ASN
197
D
O
ASN
203
H
N
VAL
198
D
N
VAL
204
H
O
VAL
207
D
O
VAL
213
1
A
TRP
405
A
TRP
265
1
Y
1
A
SER
406
A
SER
266
1
Y
1
A
THR
407
A
THR
267
1
Y
1
A
THR
408
A
THR
268
1
Y
1
B
C1
NAG
1
PLANAR
1
A
C1
NAG
734
PLANAR
1
A
C1
NAG
948
PLANAR
1
L
ILE
106
-11.53
1
-32.90
2.20
117.20
84.30
L
L
L
CA
C
N
ILE
ILE
LYS
106
106
107
Y
1
22.87
1.60
122.70
145.57
L
L
L
O
C
N
ILE
ILE
LYS
106
106
107
Y
1
-32.23
2.50
121.70
89.47
L
L
L
C
N
CA
ILE
LYS
LYS
106
107
107
Y
1
A
TRP
35
82.47
14.42
1
A
ASP
57
-92.40
38.61
1
A
ALA
73
-151.72
15.48
1
A
THR
77
-94.48
-159.62
1
A
ASP
78
-64.57
-72.41
1
A
ASN
94
-163.24
84.36
1
A
LYS
97
-144.87
48.64
1
A
ASP
99
-68.22
4.16
1
A
SER
115
-99.53
-84.33
1
A
THR
240
-104.62
42.65
1
A
ASN
241
-170.77
52.35
1
A
THR
248
-68.28
-173.69
1
A
GLN
258
63.76
-61.31
1
A
GLU
268
-122.03
-93.42
1
A
ASN
276
-166.51
96.33
1
A
PHE
353
-116.41
54.10
1
A
ASN
355
-75.75
37.12
1
A
ASN
356
-142.74
23.60
1
A
CYS
378
-155.76
82.49
1
A
PHE
391
-109.37
59.77
1
A
THR
413
-166.18
110.98
1
A
ILE
439
-100.05
-102.30
1
A
ILE
443
-119.70
71.37
1
A
ASP
457
-90.32
-64.03
1
A
ASN
460
-76.14
42.79
1
A
SER
461
-146.00
-42.82
1
A
ASN
462
-63.72
89.11
1
A
LEU
483
-86.22
36.66
1
A
LYS
487
179.81
114.57
1
C
GLN
1025
-53.35
108.18
1
C
ASN
1030
-99.97
-145.87
1
C
PRO
1048
-77.71
20.78
1
C
ASP
1056
179.76
99.37
1
C
GLU
1087
41.56
70.50
1
C
GLN
1110
-141.50
-67.14
1
C
GLN
1165
78.60
-23.01
1
L
ARG
24
-162.00
115.79
1
L
SER
30
61.15
-139.66
1
L
ALA
51
70.94
-32.37
1
L
ASN
76
-67.50
-98.89
1
L
SER
93
-166.05
-71.00
1
L
SER
121
-78.16
-163.71
1
L
ASN
138
35.12
91.16
1
L
LYS
169
-95.82
-61.08
1
L
LEU
181
-129.35
-109.90
1
L
SER
182
-156.63
-150.35
1
L
LYS
190
-147.80
-11.21
1
H
ALA
16
-69.71
-171.89
1
H
CYS
22
-167.29
74.53
1
H
PRO
41
-53.77
109.59
1
H
ARG
66
-152.42
-10.84
1
H
ALA
71
-164.91
100.89
1
H
ASP
72
-69.99
97.93
B
1
H
SER
82
39.13
67.79
1
H
ARG
83
-122.29
-166.93
1
H
ASP
95
-150.46
68.36
1
H
SER
127
-73.84
-81.45
1
H
LYS
129
-98.26
-140.83
1
H
SER
130
-64.52
65.94
1
H
THR
131
-164.13
-3.80
1
H
SER
132
-98.87
-100.55
1
H
ASP
144
45.20
89.25
1
H
PHE
146
-173.05
136.76
1
H
PRO
147
-95.49
-158.67
1
H
SER
177
-170.57
92.89
141.66
-21.93900
-0.00000
0.00000
-21.93900
0.00000
43.87800
0.273
0.257
0.258
3.51
41.09
1842
20271
9.090
83.8
1.00
1.00
3.510
1
0.110
MOLECULAR REPLACEMENT
0.90
1.11
pdb entry 3JWD
ML
FLAT BULK SOLVENT MODEL
80.10
0.32
3.51
41.09
0
7597
164
0
7433
0.004
7782
0.861
10566
14.425
2815
0.051
1223
0.004
1333
0.4000
0.3540
3.6040
75
714
43.00
0.3910
0.3330
3.7100
80
876
53.00
0.3240
0.3190
3.8290
110
1087
65.00
0.3290
0.3010
3.9660
124
1245
75.00
0.2750
0.2750
4.1250
146
1403
84.00
0.2420
0.2620
4.3120
143
1499
90.00
0.2590
0.2350
4.5390
159
1575
94.00
0.2270
0.2200
4.8230
161
1607
96.00
0.2280
0.2230
5.1950
161
1615
95.00
0.2520
0.2320
5.7170
166
1649
97.00
0.2900
0.2470
6.5410
164
1645
96.00
0.2680
0.2500
8.2300
169
1700
98.00
0.2630
0.2400
41.0910
184
1814
99.00
3.50
50.00
3JWO
20271
1
1
0.217
1
8.06
2.3
87.4
0.553
3.50
3.63
1.3
1
1.2
41.8
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Jorge Navaza
ccp4@ccp4.ac.uk
Fortran_77
http://www.ccp4.ac.uk/
AMoRE
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.005
data collection
HKL-2000
Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
GLU
64
A
GLU
31
HELX_P
A
CYS
74
A
CYS
41
1
1
11
A
ASN
98
A
ASN
65
HELX_P
A
SER
115
A
SER
82
1
2
18
A
ARG
335
A
ARG
200
HELX_P
A
PHE
353
A
PHE
218
1
3
19
A
ASP
368
A
ASP
233
HELX_P
A
THR
373
A
THR
238
1
4
6
A
SER
387
A
SER
252
HELX_P
A
PHE
391
A
PHE
256
5
5
5
A
ASP
474
A
ASP
334
HELX_P
A
TYR
484
A
TYR
344
1
6
11
C
ARG
1058
B
ARG
59
HELX_P
C
GLY
1065
B
GLY
66
5
7
8
C
LYS
1075
B
LYS
76
HELX_P
C
SER
1079
B
SER
80
5
8
5
C
GLU
1150
B
GLU
151
HELX_P
C
SER
1154
B
SER
155
5
9
5
L
GLN
79
C
GLN
79
HELX_P
L
PHE
83
C
PHE
83
5
10
5
L
SER
121
C
SER
120
HELX_P
L
LEU
125
C
LEU
124
5
11
5
L
SER
182
C
SER
181
HELX_P
L
GLU
187
C
GLU
186
1
12
6
H
THR
28
D
THR
28
HELX_P
H
PHE
32
D
PHE
32
5
13
5
H
ARG
83
D
ARG
87
HELX_P
H
THR
87
D
THR
91
5
14
5
H
SER
127
D
SER
133
HELX_P
H
LYS
129
D
LYS
135
5
15
3
H
SER
156
D
SER
162
HELX_P
H
ALA
158
D
ALA
164
5
16
3
H
SER
187
D
SER
193
HELX_P
H
LEU
189
D
LEU
195
5
17
3
H
LYS
201
D
LYS
207
HELX_P
H
ASN
204
D
ASN
210
5
18
4
disulf
2.034
A
CYS
54
A
SG
CYS
21
1_555
A
CYS
74
A
SG
CYS
41
1_555
disulf
2.036
A
CYS
119
A
SG
CYS
86
1_555
A
CYS
205
A
SG
CYS
99
1_555
disulf
2.034
A
CYS
218
A
SG
CYS
112
1_555
A
CYS
247
A
SG
CYS
141
1_555
disulf
2.036
A
CYS
228
A
SG
CYS
122
1_555
A
CYS
239
A
SG
CYS
133
1_555
disulf
2.036
A
CYS
296
A
SG
CYS
190
1_555
A
CYS
331
A
SG
CYS
196
1_555
disulf
2.030
A
CYS
378
A
SG
CYS
243
1_555
A
CYS
445
A
SG
CYS
305
1_555
disulf
2.030
A
CYS
385
A
SG
CYS
250
1_555
A
CYS
418
A
SG
CYS
278
1_555
disulf
2.036
C
CYS
1016
B
SG
CYS
17
1_555
C
CYS
1084
B
SG
CYS
85
1_555
disulf
2.030
C
CYS
1130
B
SG
CYS
131
1_555
C
CYS
1159
B
SG
CYS
160
1_555
disulf
2.034
L
CYS
23
C
SG
CYS
23
1_555
L
CYS
88
C
SG
CYS
88
1_555
disulf
2.040
L
CYS
134
C
SG
CYS
133
1_555
L
CYS
194
C
SG
CYS
193
1_555
disulf
2.028
H
CYS
22
D
SG
CYS
22
1_555
H
CYS
92
D
SG
CYS
96
1_555
disulf
2.032
H
CYS
140
D
SG
CYS
146
1_555
H
CYS
196
D
SG
CYS
202
1_555
covale
1.440
one
N-Glycosylation
A
ASN
88
A
ND2
ASN
55
1_555
A
NAG
588
F
C1
NAG
1_555
covale
1.439
one
N-Glycosylation
A
ASN
230
A
ND2
ASN
124
1_555
A
NAG
730
G
C1
NAG
1_555
covale
1.442
one
N-Glycosylation
A
ASN
234
A
ND2
ASN
128
1_555
A
NAG
734
H
C1
NAG
1_555
covale
1.442
one
N-Glycosylation
A
ASN
241
A
ND2
ASN
135
1_555
A
NAG
741
I
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
A
ASN
262
A
ND2
ASN
156
1_555
A
NAG
762
J
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
A
ASN
276
A
ND2
ASN
170
1_555
A
NAG
776
K
C1
NAG
1_555
covale
1.439
one
N-Glycosylation
A
ASN
289
A
ND2
ASN
183
1_555
B
NAG
1
E
C1
NAG
1_555
covale
1.439
one
N-Glycosylation
A
ASN
386
A
ND2
ASN
251
1_555
A
NAG
886
L
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
A
ASN
392
A
ND2
ASN
257
1_555
A
NAG
892
M
C1
NAG
1_555
covale
1.439
one
N-Glycosylation
A
ASN
397
A
ND2
ASN
262
1_555
A
NAG
897
N
C1
NAG
1_555
covale
1.437
one
N-Glycosylation
A
ASN
448
A
ND2
ASN
308
1_555
A
NAG
948
O
C1
NAG
1_555
covale
1.437
both
B
NAG
1
E
O6
NAG
1_555
B
FUL
2
E
C1
FUL
1_555
VIRAL PROTEIN
HIV-1 VIRAL SPIKE, MOLECULAR MOTION, PROTEIN ARCHITECTURE, RECEPTOR-TRIGGERED ENTRY, TYPE 1 FUSION PROTEIN, CELL MEMBRANE, DISULFIDE BOND, GLYCOPROTEIN, HOST-VIRUS INTERACTION, IMMUNE RESPONSE, VIRAL PROTEIN
A
ASP
78
A
ASP
45
1
A
PRO
79
A
PRO
46
-8.87
A
SER
398
A
SER
263
1
A
THR
399
A
THR
264
0.08
A
GLU
409
A
GLU
269
1
A
GLY
410
A
GLY
270
0.09
L
SER
7
C
SER
7
1
L
PRO
8
C
PRO
8
-1.61
L
TYR
140
C
TYR
139
1
L
PRO
141
C
PRO
140
2.14
H
PHE
146
D
PHE
152
1
H
PRO
147
D
PRO
153
-7.29
H
GLU
148
D
GLU
154
1
H
PRO
149
D
PRO
155
1.28
CD4_HUMAN
UNP
2
26
P01730
KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD
TYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCT
VLQNQKKVEFKIDIVVLAFQKAS
3JWO
PDB
1
3JWO
3JWO
PDB
3
3JWO
3JWO
PDB
4
3JWO
26
208
3JWO
1001
1183
P01730
C
1
2
184
34
497
3JWO
34
497
3JWO
A
2
1
357
1
210
3JWO
1
210
3JWO
L
3
1
209
1
214
3JWO
1
214
3JWO
H
4
1
220
1
initiating methionine
MET
1000
3JWO
C
P01730
UNP
1
2
5
4
2
4
4
6
4
6
4
3
2
4
4
6
4
4
4
6
4
4
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
40
A
TYR
7
A
VAL
42
A
VAL
9
A
GLY
495
A
GLY
355
A
ALA
497
A
ALA
357
A
VAL
44
A
VAL
11
A
GLU
47
A
GLU
14
A
LYS
485
A
LYS
345
A
GLU
492
A
GLU
352
A
GLY
222
A
GLY
116
A
ASN
229
A
ASN
123
A
ASN
241
A
ASN
135
A
VAL
245
A
VAL
139
A
VAL
84
A
VAL
51
A
LEU
86
A
LEU
53
A
VAL
75
A
VAL
42
A
THR
77
A
THR
44
A
PHE
53
A
PHE
20
A
SER
56
A
SER
23
A
ILE
215
A
ILE
109
A
ALA
219
A
ALA
113
A
GLN
246
A
GLN
140
A
ILE
251
A
ILE
145
A
GLU
91
A
GLU
58
A
MET
95
A
MET
62
A
GLY
235
A
GLY
129
A
CYS
239
A
CYS
133
A
SER
199
A
SER
93
A
GLN
203
A
GLN
97
A
CYS
119
A
CYS
86
A
THR
123
A
THR
90
A
GLY
431
A
GLY
291
A
TYR
435
A
TYR
295
A
GLN
422
A
GLN
282
A
MET
426
A
MET
286
A
GLN
258
A
GLN
152
A
ASN
262
A
ASN
156
A
THR
450
A
THR
310
A
LEU
453
A
LEU
313
A
ILE
285
A
ILE
179
A
LEU
288
A
LEU
182
A
VAL
271
A
VAL
165
A
ARG
273
A
ARG
167
A
ILE
443
A
ILE
303
A
ILE
449
A
ILE
309
A
VAL
292
A
VAL
186
A
GLY
298
A
GLY
192
A
GLY
329
A
GLY
194
A
ALA
334
A
ALA
199
A
ASP
412
A
ASP
272
A
ILE
420
A
ILE
280
A
GLU
381
A
GLU
246
A
ASN
386
A
ASN
251
A
HIS
374
A
HIS
239
A
CYS
378
A
CYS
243
A
LEU
453
A
LEU
313
A
ASP
457
A
ASP
317
A
GLU
464
A
GLU
324
A
GLY
471
A
GLY
331
A
THR
358
A
THR
223
A
LYS
362
A
LYS
227
A
SER
393
A
SER
258
A
TRP
395
A
TRP
260
C
LYS
1002
B
LYS
3
C
LYS
1007
B
LYS
8
C
GLN
1089
B
GLN
90
C
ASN
1103
B
ASN
104
C
ASP
1080
B
ASP
81
C
VAL
1086
B
VAL
87
C
PHE
1026
B
PHE
27
C
LYS
1029
B
LYS
30
C
LYS
1035
B
LYS
36
C
ASN
1039
B
ASN
40
C
LEU
1044
B
LEU
45
C
LYS
1046
B
LYS
47
C
LYS
1002
B
LYS
3
C
LYS
1007
B
LYS
8
C
GLN
1089
B
GLN
90
C
ASN
1103
B
ASN
104
C
LEU
1114
B
LEU
115
C
GLU
1119
B
GLU
120
C
THR
1143
B
THR
144
C
VAL
1146
B
VAL
147
C
VAL
1012
B
VAL
13
C
LEU
1014
B
LEU
15
C
LEU
1069
B
LEU
70
C
ILE
1071
B
ILE
72
C
ALA
1055
B
ALA
56
C
ASP
1056
B
ASP
57
C
THR
1106
B
THR
107
C
HIS
1107
B
HIS
108
C
GLY
1111
B
GLY
112
C
GLN
1112
B
GLN
113
C
ASN
1137
B
ASN
138
C
GLY
1140
B
GLY
141
C
SER
1127
B
SER
128
C
ARG
1131
B
ARG
132
C
GLY
1155
B
GLY
156
C
GLN
1163
B
GLN
164
C
LYS
1166
B
LYS
167
C
ILE
1174
B
ILE
175
L
GLN
3
C
GLN
3
L
SER
7
C
SER
7
L
VAL
19
C
VAL
19
L
ARG
24
C
ARG
24
L
ASP
70
C
ASP
70
L
ILE
75
C
ILE
75
L
PHE
62
C
PHE
62
L
SER
67
C
SER
67
L
SER
10
C
SER
10
L
ALA
13
C
ALA
13
L
THR
102
C
THR
101
L
ILE
106
C
ILE
105
L
THR
85
C
THR
85
L
GLN
90
C
GLN
90
L
LEU
33
C
LEU
33
L
GLN
38
C
GLN
38
L
LYS
45
C
LYS
45
L
TYR
49
C
TYR
49
L
THR
53
C
THR
53
L
LEU
54
C
LEU
54
L
SER
114
C
SER
113
L
PHE
118
C
PHE
117
L
ALA
130
C
ALA
129
L
PHE
139
C
PHE
138
L
TYR
173
C
TYR
172
L
THR
180
C
THR
179
L
SER
159
C
SER
158
L
VAL
163
C
VAL
162
L
ALA
153
C
ALA
152
L
GLN
155
C
GLN
154
L
LYS
145
C
LYS
144
L
VAL
150
C
VAL
149
L
TYR
192
C
TYR
191
L
THR
197
C
THR
196
L
VAL
205
C
VAL
204
L
PHE
209
C
PHE
208
H
GLN
3
D
GLN
3
H
GLN
6
D
GLN
6
H
VAL
18
D
VAL
18
H
SER
25
D
SER
25
H
THR
77
D
THR
78
H
LEU
82
D
LEU
83
H
VAL
67
D
VAL
68
H
ASP
72
D
ASP
73
H
GLU
10
D
GLU
10
H
LYS
12
D
LYS
12
H
THR
107
D
THR
113
H
VAL
111
D
VAL
117
H
ALA
88
D
ALA
92
H
ALA
94
D
ALA
98
H
MET
34
D
MET
34
H
GLN
39
D
GLN
39
H
LEU
45
D
LEU
45
H
ASP
52
D
ASP
52
H
ASP
56
D
ASP
57
H
TYR
59
D
TYR
60
H
GLU
10
D
GLU
10
H
LYS
12
D
LYS
12
H
THR
107
D
THR
113
H
VAL
111
D
VAL
117
H
ALA
88
D
ALA
92
H
ALA
94
D
ALA
98
H
VAL
102
D
VAL
108
H
TRP
103
D
TRP
109
H
SER
120
D
SER
126
H
VAL
121
D
VAL
127
H
THR
135
D
THR
141
H
TYR
145
D
TYR
151
H
TYR
176
D
TYR
182
H
PRO
185
D
PRO
191
H
VAL
163
D
VAL
169
H
THR
165
D
THR
171
H
THR
131
D
THR
137
H
SER
132
D
SER
138
H
THR
135
D
THR
141
H
TYR
145
D
TYR
151
H
TYR
176
D
TYR
182
H
PRO
185
D
PRO
191
H
VAL
169
D
VAL
175
H
LEU
170
D
LEU
176
H
THR
151
D
THR
157
H
TRP
154
D
TRP
160
H
TYR
194
D
TYR
200
H
HIS
200
D
HIS
206
H
THR
205
D
THR
211
H
VAL
211
D
VAL
217
92
P 41 21 2